data_6ZI4 # _model_server_result.job_id i6UnDkGhe-PKDrYPnBpBYA _model_server_result.datetime_utc '2024-11-22 16:38:50' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6zi4 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"P","auth_seq_id":706}' # _entry.id 6ZI4 # _exptl.entry_id 6ZI4 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 229.402 _entity.id 8 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'LAURYL DIMETHYLAMINE-N-OXIDE' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6ZI4 _cell.length_a 226.4 _cell.length_b 226.4 _cell.length_c 113.7 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6ZI4 _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall 'P 4nw 2abw' _symmetry.space_group_name_H-M 'P 43 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 8 K N N ? 8 P N N ? 8 Q N N ? 8 W N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A SG CYS 1 C CYS 1 1_555 I CG3 DGA . C DGA 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.595 ? covale ? covale2 A SG CYS 87 C CYS 87 1_555 E CAB HEC . C HEC 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.763 ? covale ? covale3 A SG CYS 90 C CYS 90 1_555 E CAC HEC . C HEC 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.799 ? covale ? covale4 A SG CYS 132 C CYS 132 1_555 F CAB HEC . C HEC 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.784 ? covale ? covale5 A SG CYS 135 C CYS 135 1_555 F CAC HEC . C HEC 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.79 ? covale ? covale6 A SG CYS 244 C CYS 244 1_555 G CAB HEC . C HEC 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.759 ? covale ? covale7 A SG CYS 247 C CYS 247 1_555 G CAC HEC . C HEC 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.821 ? covale ? covale8 A SG CYS 305 C CYS 305 1_555 H CAB HEC . C HEC 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.787 ? covale ? covale9 A SG CYS 308 C CYS 308 1_555 H CAC HEC . C HEC 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.802 ? covale ? covale10 B C FME 1 H FME 1 1_555 B N TYR 2 H TYR 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? metalc ? metalc1 A SD MET 74 C MET 74 1_555 E FE HEC . C HEC 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.406 ? metalc ? metalc2 A NE2 HIS 91 C HIS 91 1_555 E FE HEC . C HEC 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.059 ? metalc ? metalc3 A SD MET 110 C MET 110 1_555 F FE HEC . C HEC 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.349 ? metalc ? metalc4 A NE2 HIS 124 C HIS 124 1_555 H FE HEC . C HEC 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.094 ? metalc ? metalc5 A NE2 HIS 136 C HIS 136 1_555 F FE HEC . C HEC 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.963 ? metalc ? metalc6 A SD MET 233 C MET 233 1_555 G FE HEC . C HEC 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.318 ? metalc ? metalc7 A NE2 HIS 248 C HIS 248 1_555 G FE HEC . C HEC 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.023 ? metalc ? metalc8 A NE2 HIS 309 C HIS 309 1_555 H FE HEC . C HEC 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.945 ? metalc ? metalc9 C NE2 HIS 190 L HIS 190 1_555 Y FE FE . M FE 401 1_555 ? A ? ? A ? ? ? ? ? ? ? 2.124 ? metalc ? metalc10 C NE2 HIS 190 L HIS 190 1_555 Y FE FE . M FE 401 1_555 ? B ? ? B ? ? ? ? ? ? ? 1.979 ? metalc ? metalc11 C NE2 HIS 230 L HIS 230 1_555 Y FE FE . M FE 401 1_555 ? A ? ? A ? ? ? ? ? ? ? 2.249 ? metalc ? metalc12 C NE2 HIS 230 L HIS 230 1_555 Y FE FE . M FE 401 1_555 ? B ? ? B ? ? ? ? ? ? ? 2.293 ? metalc ? metalc13 D NE2 HIS 217 M HIS 217 1_555 Y FE FE . M FE 401 1_555 ? A ? ? A ? ? ? ? ? ? ? 2.102 ? metalc ? metalc14 D NE2 HIS 217 M HIS 217 1_555 Y FE FE . M FE 401 1_555 ? B ? ? B ? ? ? ? ? ? ? 2.18 ? metalc ? metalc15 D OE1 GLU 232 M GLU 232 1_555 Y FE FE . M FE 401 1_555 ? A ? ? A ? ? ? ? ? ? ? 2.388 ? metalc ? metalc16 D OE1 GLU 232 M GLU 232 1_555 Y FE FE . M FE 401 1_555 ? B ? ? B ? ? ? ? ? ? ? 2.327 ? metalc ? metalc17 D OE2 GLU 232 M GLU 232 1_555 Y FE FE . M FE 401 1_555 ? A ? ? A ? ? ? ? ? ? ? 2.143 ? metalc ? metalc18 D OE2 GLU 232 M GLU 232 1_555 Y FE FE . M FE 401 1_555 ? B ? ? B ? ? ? ? ? ? ? 2.221 ? metalc ? metalc19 D NE2 HIS 264 M HIS 264 1_555 Y FE FE . M FE 401 1_555 ? A ? ? A ? ? ? ? ? ? ? 2.28 ? metalc ? metalc20 D NE2 HIS 264 M HIS 264 1_555 Y FE FE . M FE 401 1_555 ? B ? ? B ? ? ? ? ? ? ? 2.195 ? # _chem_comp.formula 'C14 H31 N O' _chem_comp.formula_weight 229.402 _chem_comp.id LDA _chem_comp.mon_nstd_flag . _chem_comp.name 'LAURYL DIMETHYLAMINE-N-OXIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 O1 LDA sing 712 n n N1 CM1 LDA sing 713 n n N1 CM2 LDA sing 714 n n N1 C1 LDA sing 715 n n CM1 HM11 LDA sing 716 n n CM1 HM12 LDA sing 717 n n CM1 HM13 LDA sing 718 n n CM2 HM21 LDA sing 719 n n CM2 HM22 LDA sing 720 n n CM2 HM23 LDA sing 721 n n C1 C2 LDA sing 722 n n C1 H11 LDA sing 723 n n C1 H12 LDA sing 724 n n C2 C3 LDA sing 725 n n C2 H21 LDA sing 726 n n C2 H22 LDA sing 727 n n C3 C4 LDA sing 728 n n C3 H31 LDA sing 729 n n C3 H32 LDA sing 730 n n C4 C5 LDA sing 731 n n C4 H41 LDA sing 732 n n C4 H42 LDA sing 733 n n C5 C6 LDA sing 734 n n C5 H51 LDA sing 735 n n C5 H52 LDA sing 736 n n C6 C7 LDA sing 737 n n C6 H61 LDA sing 738 n n C6 H62 LDA sing 739 n n C7 C8 LDA sing 740 n n C7 H71 LDA sing 741 n n C7 H72 LDA sing 742 n n C8 C9 LDA sing 743 n n C8 H81 LDA sing 744 n n C8 H82 LDA sing 745 n n C9 C10 LDA sing 746 n n C9 H91 LDA sing 747 n n C9 H92 LDA sing 748 n n C10 C11 LDA sing 749 n n C10 H101 LDA sing 750 n n C10 H102 LDA sing 751 n n C11 C12 LDA sing 752 n n C11 H111 LDA sing 753 n n C11 H112 LDA sing 754 n n C12 H121 LDA sing 755 n n C12 H122 LDA sing 756 n n C12 H123 LDA sing 757 n n # _atom_sites.entry_id 6ZI4 _atom_sites.fract_transf_matrix[1][1] 0.004417 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.004417 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008795 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 5 HEC C 1 401 401 HEC HEC . F 5 HEC C 1 402 402 HEC HEC . G 5 HEC C 1 403 403 HEC HEC . H 5 HEC C 1 404 404 HEC HEC . I 6 DGA C 1 405 1278 DGA DGA . J 7 SO4 C 1 406 7 SO4 SO4 . K 8 LDA H 1 701 701 LDA LDA . L 7 SO4 H 1 702 1 SO4 SO4 . M 7 SO4 H 1 703 10 SO4 SO4 . N 7 SO4 H 1 704 18 SO4 SO4 . O 7 SO4 H 1 705 21 SO4 SO4 . P 8 LDA H 1 706 1 LDA LDA . Q 8 LDA H 1 707 2 LDA LDA . R 9 HTO H 1 708 3 HTO HTO . S 10 BCB L 1 301 400 BCB BCB . T 10 BCB L 1 302 401 BCB BCB . U 11 BPB L 1 303 402 BPB BPB . V 10 BCB L 1 304 400 BCB BCB . W 8 LDA L 1 305 7 LDA LDA . X 9 HTO L 1 306 1 HTO HTO . Y 12 FE M 1 401 500 FE FE . Z 13 MQ7 M 1 402 501 MQ7 MQ7 . AA 10 BCB M 1 403 401 BCB BCB . BA 11 BPB M 1 404 402 BPB BPB . CA 14 NS5 M 1 405 600 NS5 NS5 . DA 7 SO4 M 1 406 3 SO4 SO4 . EA 7 SO4 M 1 407 5 SO4 SO4 . FA 7 SO4 M 1 408 6 SO4 SO4 . GA 7 SO4 M 1 409 9 SO4 SO4 . HA 7 SO4 M 1 410 15 SO4 SO4 . IA 7 SO4 M 1 411 19 SO4 SO4 . JA 7 SO4 M 1 412 20 SO4 SO4 . KA 15 HOH C 1 501 132 HOH HOH . KA 15 HOH C 2 502 67 HOH HOH . KA 15 HOH C 3 503 146 HOH HOH . LA 15 HOH H 1 801 140 HOH HOH . LA 15 HOH H 2 802 99 HOH HOH . MA 15 HOH L 1 401 52 HOH HOH . MA 15 HOH L 2 402 41 HOH HOH . MA 15 HOH L 3 403 111 HOH HOH . MA 15 HOH L 4 404 63 HOH HOH . NA 15 HOH M 1 501 42 HOH HOH . NA 15 HOH M 2 502 30 HOH HOH . NA 15 HOH M 3 503 110 HOH HOH . NA 15 HOH M 4 504 124 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 LDA . . . P 8 10.408 -49.397 38.652 1 158.53 ? N1 LDA 706 H 1 HETATM 2 O O1 LDA . . . P 8 9.384 -50.358 38.748 1 160.88 ? O1 LDA 706 H 1 HETATM 3 C CM1 LDA . . . P 8 11.212 -49.453 39.863 1 156.5 ? CM1 LDA 706 H 1 HETATM 4 C CM2 LDA . . . P 8 9.828 -48.06 38.563 1 159.53 ? CM2 LDA 706 H 1 HETATM 5 C C1 LDA . . . P 8 11.262 -49.734 37.513 1 138.54 ? C1 LDA 706 H 1 HETATM 6 C C2 LDA . . . P 8 11.071 -48.827 36.287 1 128.1 ? C2 LDA 706 H 1 HETATM 7 C C3 LDA . . . P 8 9.975 -49.368 35.36 1 115.08 ? C3 LDA 706 H 1 HETATM 8 C C4 LDA . . . P 8 10.531 -50.404 34.377 1 97.51 ? C4 LDA 706 H 1 HETATM 9 C C5 LDA . . . P 8 9.384 -51.019 33.576 1 91.5 ? C5 LDA 706 H 1 HETATM 10 C C6 LDA . . . P 8 9.229 -50.317 32.232 1 86.26 ? C6 LDA 706 H 1 HETATM 11 C C7 LDA . . . P 8 7.942 -50.809 31.552 1 83 ? C7 LDA 706 H 1 HETATM 12 C C8 LDA . . . P 8 7.717 -50.098 30.211 1 82.87 ? C8 LDA 706 H 1 HETATM 13 C C9 LDA . . . P 8 7.162 -51.109 29.212 1 75.37 ? C9 LDA 706 H 1 HETATM 14 C C10 LDA . . . P 8 7.395 -50.648 27.771 1 77.36 ? C10 LDA 706 H 1 HETATM 15 C C11 LDA . . . P 8 6.862 -51.744 26.843 1 86.02 ? C11 LDA 706 H 1 HETATM 16 C C12 LDA . . . P 8 6.648 -51.199 25.43 1 84.06 ? C12 LDA 706 H 1 # _model_server_stats.io_time_ms 18 _model_server_stats.parse_time_ms 27 _model_server_stats.create_model_time_ms 11 _model_server_stats.query_time_ms 284 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 16 #