data_6ZIB # _model_server_result.job_id rG5BhA6_oZuLmX0909GaVA _model_server_result.datetime_utc '2024-11-25 15:14:57' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6zib # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":902}' # _entry.id 6ZIB # _exptl.entry_id 6ZIB _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 665.441 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6ZIB _cell.length_a 65.937 _cell.length_b 127.39 _cell.length_c 228.173 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6ZIB _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,I 1 1 B,F,G,H,J 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 G N N # _chem_comp.formula 'C21 H29 N7 O14 P2' _chem_comp.formula_weight 665.441 _chem_comp.id NAI _chem_comp.mon_nstd_flag . _chem_comp.name '1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms NADH # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A NAI doub 333 n n PA O2A NAI sing 334 n n PA O5B NAI sing 335 n n PA O3 NAI sing 336 n n O2A HOA2 NAI sing 337 n n O5B C5B NAI sing 338 n n C5B C4B NAI sing 339 n n C5B H51A NAI sing 340 n n C5B H52A NAI sing 341 n n C4B O4B NAI sing 342 n n C4B C3B NAI sing 343 n n C4B H4B NAI sing 344 n n O4B C1B NAI sing 345 n n C3B O3B NAI sing 346 n n C3B C2B NAI sing 347 n n C3B H3B NAI sing 348 n n O3B HO3A NAI sing 349 n n C2B O2B NAI sing 350 n n C2B C1B NAI sing 351 n n C2B H2B NAI sing 352 n n O2B HO2A NAI sing 353 n n C1B N9A NAI sing 354 n n C1B H1B NAI sing 355 n n N9A C8A NAI sing 356 n y N9A C4A NAI sing 357 n y C8A N7A NAI doub 358 n y C8A H8A NAI sing 359 n n N7A C5A NAI sing 360 n y C5A C6A NAI sing 361 n y C5A C4A NAI doub 362 n y C6A N6A NAI sing 363 n n C6A N1A NAI doub 364 n y N6A H61A NAI sing 365 n n N6A H62A NAI sing 366 n n N1A C2A NAI sing 367 n y C2A N3A NAI doub 368 n y C2A H2A NAI sing 369 n n N3A C4A NAI sing 370 n y O3 PN NAI sing 371 n n PN O1N NAI sing 372 n n PN O2N NAI doub 373 n n PN O5D NAI sing 374 n n O1N HO1N NAI sing 375 n n O5D C5D NAI sing 376 n n C5D C4D NAI sing 377 n n C5D H51N NAI sing 378 n n C5D H52N NAI sing 379 n n C4D O4D NAI sing 380 n n C4D C3D NAI sing 381 n n C4D H4D NAI sing 382 n n O4D C1D NAI sing 383 n n C3D O3D NAI sing 384 n n C3D C2D NAI sing 385 n n C3D H3D NAI sing 386 n n O3D HO3N NAI sing 387 n n C2D O2D NAI sing 388 n n C2D C1D NAI sing 389 n n C2D H2D NAI sing 390 n n O2D HO2N NAI sing 391 n n C1D N1N NAI sing 392 n n C1D H1D NAI sing 393 n n N1N C2N NAI sing 394 n n N1N C6N NAI sing 395 n n C2N C3N NAI doub 396 n n C2N H2N NAI sing 397 n n C3N C7N NAI sing 398 n n C3N C4N NAI sing 399 n n C7N O7N NAI doub 400 n n C7N N7N NAI sing 401 n n N7N H71N NAI sing 402 n n N7N H72N NAI sing 403 n n C4N C5N NAI sing 404 n n C4N H4N NAI sing 405 n n C4N H42N NAI sing 406 n n C5N C6N NAI doub 407 n n C5N H5N NAI sing 408 n n C6N H6N NAI sing 409 n n # _atom_sites.entry_id 6ZIB _atom_sites.fract_transf_matrix[1][1] 0.015166 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.00785 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004383 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 CAA AAA 1 901 901 CAA CAA . D 3 NAI AAA 1 902 1001 NAI NAI . E 4 SO4 AAA 1 903 3 SO4 SO4 . F 2 CAA BBB 1 801 801 CAA CAA . G 3 NAI BBB 1 802 901 NAI NAI . H 4 SO4 BBB 1 803 4 SO4 SO4 . I 5 HOH AAA 1 1001 25 HOH HOH . I 5 HOH AAA 2 1002 35 HOH HOH . I 5 HOH AAA 3 1003 51 HOH HOH . I 5 HOH AAA 4 1004 46 HOH HOH . I 5 HOH AAA 5 1005 4 HOH HOH . I 5 HOH AAA 6 1006 28 HOH HOH . I 5 HOH AAA 7 1007 44 HOH HOH . I 5 HOH AAA 8 1008 3 HOH HOH . I 5 HOH AAA 9 1009 14 HOH HOH . I 5 HOH AAA 10 1010 55 HOH HOH . I 5 HOH AAA 11 1011 21 HOH HOH . I 5 HOH AAA 12 1012 5 HOH HOH . I 5 HOH AAA 13 1013 73 HOH HOH . I 5 HOH AAA 14 1014 66 HOH HOH . I 5 HOH AAA 15 1015 53 HOH HOH . I 5 HOH AAA 16 1016 58 HOH HOH . I 5 HOH AAA 17 1017 61 HOH HOH . I 5 HOH AAA 18 1018 20 HOH HOH . I 5 HOH AAA 19 1019 27 HOH HOH . I 5 HOH AAA 20 1020 40 HOH HOH . I 5 HOH AAA 21 1021 48 HOH HOH . I 5 HOH AAA 22 1022 16 HOH HOH . I 5 HOH AAA 23 1023 29 HOH HOH . I 5 HOH AAA 24 1024 39 HOH HOH . I 5 HOH AAA 25 1025 22 HOH HOH . I 5 HOH AAA 26 1026 38 HOH HOH . I 5 HOH AAA 27 1027 63 HOH HOH . I 5 HOH AAA 28 1028 36 HOH HOH . I 5 HOH AAA 29 1029 7 HOH HOH . I 5 HOH AAA 30 1030 10 HOH HOH . I 5 HOH AAA 31 1031 41 HOH HOH . I 5 HOH AAA 32 1032 68 HOH HOH . I 5 HOH AAA 33 1033 52 HOH HOH . I 5 HOH AAA 34 1034 65 HOH HOH . I 5 HOH AAA 35 1035 37 HOH HOH . I 5 HOH AAA 36 1036 9 HOH HOH . I 5 HOH AAA 37 1037 32 HOH HOH . I 5 HOH AAA 38 1038 69 HOH HOH . I 5 HOH AAA 39 1039 54 HOH HOH . I 5 HOH AAA 40 1040 30 HOH HOH . I 5 HOH AAA 41 1041 23 HOH HOH . I 5 HOH AAA 42 1042 31 HOH HOH . I 5 HOH AAA 43 1043 6 HOH HOH . I 5 HOH AAA 44 1044 70 HOH HOH . I 5 HOH AAA 45 1045 72 HOH HOH . I 5 HOH AAA 46 1046 15 HOH HOH . I 5 HOH AAA 47 1047 24 HOH HOH . I 5 HOH AAA 48 1048 67 HOH HOH . J 5 HOH BBB 1 901 71 HOH HOH . J 5 HOH BBB 2 902 64 HOH HOH . J 5 HOH BBB 3 903 13 HOH HOH . J 5 HOH BBB 4 904 17 HOH HOH . J 5 HOH BBB 5 905 33 HOH HOH . J 5 HOH BBB 6 906 19 HOH HOH . J 5 HOH BBB 7 907 50 HOH HOH . J 5 HOH BBB 8 908 2 HOH HOH . J 5 HOH BBB 9 909 8 HOH HOH . J 5 HOH BBB 10 910 12 HOH HOH . J 5 HOH BBB 11 911 1 HOH HOH . J 5 HOH BBB 12 912 49 HOH HOH . J 5 HOH BBB 13 913 42 HOH HOH . J 5 HOH BBB 14 914 57 HOH HOH . J 5 HOH BBB 15 915 62 HOH HOH . J 5 HOH BBB 16 916 18 HOH HOH . J 5 HOH BBB 17 917 11 HOH HOH . J 5 HOH BBB 18 918 59 HOH HOH . J 5 HOH BBB 19 919 43 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA NAI . . . D 3 -29.041 1.093 30.969 1 90.77 ? PA NAI 902 AAA 1 HETATM 2 O O1A NAI . . . D 3 -30.139 0.135 31.37 1 89.45 ? O1A NAI 902 AAA 1 HETATM 3 O O2A NAI . . . D 3 -27.988 1.471 31.985 1 88.89 ? O2A NAI 902 AAA 1 HETATM 4 O O5B NAI . . . D 3 -29.703 2.432 30.363 1 94.85 ? O5B NAI 902 AAA 1 HETATM 5 C C5B NAI . . . D 3 -30.604 3.256 31.092 1 98.2 ? C5B NAI 902 AAA 1 HETATM 6 C C4B NAI . . . D 3 -30.04 4.672 31.138 1 99.08 ? C4B NAI 902 AAA 1 HETATM 7 O O4B NAI . . . D 3 -30.87 5.589 30.409 1 97.02 ? O4B NAI 902 AAA 1 HETATM 8 C C3B NAI . . . D 3 -29.976 5.154 32.579 1 101.24 ? C3B NAI 902 AAA 1 HETATM 9 O O3B NAI . . . D 3 -28.681 5.709 32.835 1 102.5 ? O3B NAI 902 AAA 1 HETATM 10 C C2B NAI . . . D 3 -31.051 6.218 32.672 1 101.88 ? C2B NAI 902 AAA 1 HETATM 11 O O2B NAI . . . D 3 -30.693 7.272 33.569 1 108.79 ? O2B NAI 902 AAA 1 HETATM 12 C C1B NAI . . . D 3 -31.17 6.719 31.241 1 96.28 ? C1B NAI 902 AAA 1 HETATM 13 N N9A NAI . . . D 3 -32.501 7.339 30.988 1 89.89 ? N9A NAI 902 AAA 1 HETATM 14 C C8A NAI . . . D 3 -33.715 6.843 31.311 1 87.55 ? C8A NAI 902 AAA 1 HETATM 15 N N7A NAI . . . D 3 -34.71 7.686 30.933 1 84.59 ? N7A NAI 902 AAA 1 HETATM 16 C C5A NAI . . . D 3 -34.127 8.75 30.358 1 82.87 ? C5A NAI 902 AAA 1 HETATM 17 C C6A NAI . . . D 3 -34.586 10.011 29.736 1 83.98 ? C6A NAI 902 AAA 1 HETATM 18 N N6A NAI . . . D 3 -35.906 10.301 29.656 1 87.24 ? N6A NAI 902 AAA 1 HETATM 19 N N1A NAI . . . D 3 -33.645 10.858 29.251 1 84.3 ? N1A NAI 902 AAA 1 HETATM 20 C C2A NAI . . . D 3 -32.326 10.58 29.324 1 82.43 ? C2A NAI 902 AAA 1 HETATM 21 N N3A NAI . . . D 3 -31.839 9.454 29.876 1 82.77 ? N3A NAI 902 AAA 1 HETATM 22 C C4A NAI . . . D 3 -32.674 8.52 30.399 1 84.68 ? C4A NAI 902 AAA 1 HETATM 23 O O3 NAI . . . D 3 -28.274 0.595 29.636 1 88.09 ? O3 NAI 902 AAA 1 HETATM 24 P PN NAI . . . D 3 -28.865 -0.439 28.552 1 80.7 ? PN NAI 902 AAA 1 HETATM 25 O O1N NAI . . . D 3 -30.06 -1.162 29.119 1 84.27 ? O1N NAI 902 AAA 1 HETATM 26 O O2N NAI . . . D 3 -27.678 -1.252 28.115 1 84.26 ? O2N NAI 902 AAA 1 HETATM 27 O O5D NAI . . . D 3 -29.377 0.454 27.312 1 78.51 ? O5D NAI 902 AAA 1 HETATM 28 C C5D NAI . . . D 3 -30.776 0.694 27.146 1 76.66 ? C5D NAI 902 AAA 1 HETATM 29 C C4D NAI . . . D 3 -31.403 -0.049 25.963 1 76.83 ? C4D NAI 902 AAA 1 HETATM 30 O O4D NAI . . . D 3 -30.451 -0.799 25.2 1 79.02 ? O4D NAI 902 AAA 1 HETATM 31 C C3D NAI . . . D 3 -32.485 -1.025 26.407 1 77.05 ? C3D NAI 902 AAA 1 HETATM 32 O O3D NAI . . . D 3 -33.698 -0.695 25.728 1 77.28 ? O3D NAI 902 AAA 1 HETATM 33 C C2D NAI . . . D 3 -32.014 -2.391 25.95 1 78.97 ? C2D NAI 902 AAA 1 HETATM 34 O O2D NAI . . . D 3 -33.098 -3.194 25.473 1 77.34 ? O2D NAI 902 AAA 1 HETATM 35 C C1D NAI . . . D 3 -31.026 -2.06 24.837 1 80.1 ? C1D NAI 902 AAA 1 HETATM 36 N N1N NAI . . . D 3 -29.99 -3.087 24.643 1 82.21 ? N1N NAI 902 AAA 1 HETATM 37 C C2N NAI . . . D 3 -29.275 -3.558 25.685 1 86.14 ? C2N NAI 902 AAA 1 HETATM 38 C C3N NAI . . . D 3 -28.281 -4.534 25.538 1 86.05 ? C3N NAI 902 AAA 1 HETATM 39 C C7N NAI . . . D 3 -27.509 -5.015 26.744 1 84.75 ? C7N NAI 902 AAA 1 HETATM 40 O O7N NAI . . . D 3 -26.944 -6.096 26.709 1 87.43 ? O7N NAI 902 AAA 1 HETATM 41 N N7N NAI . . . D 3 -27.441 -4.247 27.834 1 81.47 ? N7N NAI 902 AAA 1 HETATM 42 C C4N NAI . . . D 3 -27.974 -5.108 24.165 1 84.34 ? C4N NAI 902 AAA 1 HETATM 43 C C5N NAI . . . D 3 -28.813 -4.517 23.123 1 81.35 ? C5N NAI 902 AAA 1 HETATM 44 C C6N NAI . . . D 3 -29.773 -3.543 23.4 1 81.6 ? C6N NAI 902 AAA 1 # _model_server_stats.io_time_ms 15 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 24 _model_server_stats.query_time_ms 264 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 44 #