data_6ZIO # _model_server_result.job_id 1jOVmkW9pv08OhL75ao-4g _model_server_result.datetime_utc '2024-11-26 01:08:31' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6zio # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":202}' # _entry.id 6ZIO # _exptl.entry_id 6ZIO _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 24.305 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MAGNESIUM ION' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 78.83 _cell.angle_beta 75.24 _cell.angle_gamma 64.7 _cell.entry_id 6ZIO _cell.length_a 37.174 _cell.length_b 37.161 _cell.length_c 66.245 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6ZIO _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 E N N ? 2 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OG SER 18 A SER 17 1_555 C MG MG . A MG 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.151 ? metalc ? metalc2 C MG MG . A MG 201 1_555 D O2B GDP . A GDP 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.237 ? metalc ? metalc3 C MG MG . A MG 201 1_555 H O HOH . A HOH 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.229 ? metalc ? metalc4 C MG MG . A MG 201 1_555 H O HOH . A HOH 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.087 ? metalc ? metalc5 C MG MG . A MG 201 1_555 H O HOH . A HOH 309 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.225 ? metalc ? metalc6 C MG MG . A MG 201 1_555 H O HOH . A HOH 369 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.051 ? metalc ? metalc7 B OG SER 18 B SER 17 1_555 E MG MG . B MG 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.121 ? metalc ? metalc8 B O ALA 19 B ALA 18 1_555 F MG MG . B MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.573 ? metalc ? metalc9 B O HIS 28 B HIS 27 1_555 F MG MG . B MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.789 ? metalc ? metalc10 E MG MG . B MG 201 1_555 G O1B GDP . B GDP 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.409 ? metalc ? metalc11 E MG MG . B MG 201 1_555 I O HOH . B HOH 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.129 ? metalc ? metalc12 E MG MG . B MG 201 1_555 I O HOH . B HOH 312 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.016 ? metalc ? metalc13 E MG MG . B MG 201 1_555 I O HOH . B HOH 314 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.084 ? metalc ? metalc14 E MG MG . B MG 201 1_555 I O HOH . B HOH 315 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? # _chem_comp.formula 'Mg 2' _chem_comp.formula_weight 24.305 _chem_comp.id MG _chem_comp.mon_nstd_flag . _chem_comp.name 'MAGNESIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 6ZIO _atom_sites.fract_transf_matrix[1][1] 0.026901 _atom_sites.fract_transf_matrix[1][2] -0.012716 _atom_sites.fract_transf_matrix[1][3] -0.005881 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.029765 _atom_sites.fract_transf_matrix[2][3] -0.002902 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.015685 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 MG A 1 201 1 MG MG . D 3 GDP A 1 202 201 GDP GDP . E 2 MG B 1 201 2 MG MG . F 2 MG B 1 202 3 MG MG . G 3 GDP B 1 203 202 GDP GDP . H 4 HOH A 1 301 135 HOH HOH . H 4 HOH A 2 302 10 HOH HOH . H 4 HOH A 3 303 84 HOH HOH . H 4 HOH A 4 304 106 HOH HOH . H 4 HOH A 5 305 16 HOH HOH . H 4 HOH A 6 306 24 HOH HOH . H 4 HOH A 7 307 189 HOH HOH . H 4 HOH A 8 308 157 HOH HOH . H 4 HOH A 9 309 20 HOH HOH . H 4 HOH A 10 310 7 HOH HOH . H 4 HOH A 11 311 96 HOH HOH . H 4 HOH A 12 312 91 HOH HOH . H 4 HOH A 13 313 17 HOH HOH . H 4 HOH A 14 314 277 HOH HOH . H 4 HOH A 15 315 154 HOH HOH . H 4 HOH A 16 316 179 HOH HOH . H 4 HOH A 17 317 217 HOH HOH . H 4 HOH A 18 318 316 HOH HOH . H 4 HOH A 19 319 6 HOH HOH . H 4 HOH A 20 320 109 HOH HOH . H 4 HOH A 21 321 163 HOH HOH . H 4 HOH A 22 322 28 HOH HOH . H 4 HOH A 23 323 42 HOH HOH . H 4 HOH A 24 324 69 HOH HOH . H 4 HOH A 25 325 92 HOH HOH . H 4 HOH A 26 326 66 HOH HOH . H 4 HOH A 27 327 138 HOH HOH . H 4 HOH A 28 328 74 HOH HOH . H 4 HOH A 29 329 203 HOH HOH . H 4 HOH A 30 330 160 HOH HOH . H 4 HOH A 31 331 320 HOH HOH . H 4 HOH A 32 332 155 HOH HOH . H 4 HOH A 33 333 131 HOH HOH . H 4 HOH A 34 334 153 HOH HOH . H 4 HOH A 35 335 332 HOH HOH . H 4 HOH A 36 336 83 HOH HOH . H 4 HOH A 37 337 317 HOH HOH . H 4 HOH A 38 338 112 HOH HOH . H 4 HOH A 39 339 236 HOH HOH . H 4 HOH A 40 340 176 HOH HOH . H 4 HOH A 41 341 70 HOH HOH . H 4 HOH A 42 342 90 HOH HOH . H 4 HOH A 43 343 39 HOH HOH . H 4 HOH A 44 344 279 HOH HOH . H 4 HOH A 45 345 56 HOH HOH . H 4 HOH A 46 346 99 HOH HOH . H 4 HOH A 47 347 82 HOH HOH . H 4 HOH A 48 348 245 HOH HOH . H 4 HOH A 49 349 121 HOH HOH . H 4 HOH A 50 350 58 HOH HOH . H 4 HOH A 51 351 266 HOH HOH . H 4 HOH A 52 352 81 HOH HOH . H 4 HOH A 53 353 63 HOH HOH . H 4 HOH A 54 354 183 HOH HOH . H 4 HOH A 55 355 253 HOH HOH . H 4 HOH A 56 356 33 HOH HOH . H 4 HOH A 57 357 15 HOH HOH . H 4 HOH A 58 358 302 HOH HOH . H 4 HOH A 59 359 174 HOH HOH . H 4 HOH A 60 360 60 HOH HOH . H 4 HOH A 61 361 62 HOH HOH . H 4 HOH A 62 362 233 HOH HOH . H 4 HOH A 63 363 323 HOH HOH . H 4 HOH A 64 364 100 HOH HOH . H 4 HOH A 65 365 188 HOH HOH . H 4 HOH A 66 366 202 HOH HOH . H 4 HOH A 67 367 181 HOH HOH . H 4 HOH A 68 368 195 HOH HOH . H 4 HOH A 69 369 78 HOH HOH . H 4 HOH A 70 370 61 HOH HOH . H 4 HOH A 71 371 311 HOH HOH . H 4 HOH A 72 372 47 HOH HOH . H 4 HOH A 73 373 167 HOH HOH . H 4 HOH A 74 374 108 HOH HOH . H 4 HOH A 75 375 216 HOH HOH . H 4 HOH A 76 376 322 HOH HOH . H 4 HOH A 77 377 54 HOH HOH . H 4 HOH A 78 378 318 HOH HOH . H 4 HOH A 79 379 220 HOH HOH . H 4 HOH A 80 380 263 HOH HOH . H 4 HOH A 81 381 205 HOH HOH . H 4 HOH A 82 382 321 HOH HOH . H 4 HOH A 83 383 200 HOH HOH . H 4 HOH A 84 384 165 HOH HOH . H 4 HOH A 85 385 59 HOH HOH . H 4 HOH A 86 386 229 HOH HOH . H 4 HOH A 87 387 86 HOH HOH . H 4 HOH A 88 388 310 HOH HOH . H 4 HOH A 89 389 232 HOH HOH . H 4 HOH A 90 390 325 HOH HOH . H 4 HOH A 91 391 65 HOH HOH . H 4 HOH A 92 392 71 HOH HOH . H 4 HOH A 93 393 190 HOH HOH . H 4 HOH A 94 394 119 HOH HOH . H 4 HOH A 95 395 3 HOH HOH . H 4 HOH A 96 396 246 HOH HOH . H 4 HOH A 97 397 214 HOH HOH . H 4 HOH A 98 398 152 HOH HOH . H 4 HOH A 99 399 231 HOH HOH . H 4 HOH A 100 400 235 HOH HOH . H 4 HOH A 101 401 243 HOH HOH . H 4 HOH A 102 402 13 HOH HOH . H 4 HOH A 103 403 221 HOH HOH . H 4 HOH A 104 404 137 HOH HOH . H 4 HOH A 105 405 213 HOH HOH . H 4 HOH A 106 406 191 HOH HOH . H 4 HOH A 107 407 314 HOH HOH . H 4 HOH A 108 408 38 HOH HOH . H 4 HOH A 109 409 64 HOH HOH . H 4 HOH A 110 410 278 HOH HOH . H 4 HOH A 111 411 272 HOH HOH . H 4 HOH A 112 412 88 HOH HOH . H 4 HOH A 113 413 35 HOH HOH . H 4 HOH A 114 414 150 HOH HOH . H 4 HOH A 115 415 169 HOH HOH . H 4 HOH A 116 416 281 HOH HOH . H 4 HOH A 117 417 145 HOH HOH . H 4 HOH A 118 418 208 HOH HOH . H 4 HOH A 119 419 241 HOH HOH . H 4 HOH A 120 420 299 HOH HOH . H 4 HOH A 121 421 139 HOH HOH . H 4 HOH A 122 422 177 HOH HOH . H 4 HOH A 123 423 23 HOH HOH . H 4 HOH A 124 424 222 HOH HOH . H 4 HOH A 125 425 122 HOH HOH . H 4 HOH A 126 426 212 HOH HOH . H 4 HOH A 127 427 114 HOH HOH . H 4 HOH A 128 428 304 HOH HOH . H 4 HOH A 129 429 327 HOH HOH . H 4 HOH A 130 430 98 HOH HOH . H 4 HOH A 131 431 305 HOH HOH . H 4 HOH A 132 432 116 HOH HOH . H 4 HOH A 133 433 104 HOH HOH . H 4 HOH A 134 434 301 HOH HOH . H 4 HOH A 135 435 143 HOH HOH . H 4 HOH A 136 436 130 HOH HOH . H 4 HOH A 137 437 101 HOH HOH . H 4 HOH A 138 438 209 HOH HOH . I 4 HOH B 1 301 1 HOH HOH . I 4 HOH B 2 302 11 HOH HOH . I 4 HOH B 3 303 41 HOH HOH . I 4 HOH B 4 304 19 HOH HOH . I 4 HOH B 5 305 171 HOH HOH . I 4 HOH B 6 306 306 HOH HOH . I 4 HOH B 7 307 276 HOH HOH . I 4 HOH B 8 308 79 HOH HOH . I 4 HOH B 9 309 2 HOH HOH . I 4 HOH B 10 310 111 HOH HOH . I 4 HOH B 11 311 240 HOH HOH . I 4 HOH B 12 312 43 HOH HOH . I 4 HOH B 13 313 148 HOH HOH . I 4 HOH B 14 314 40 HOH HOH . I 4 HOH B 15 315 18 HOH HOH . I 4 HOH B 16 316 68 HOH HOH . I 4 HOH B 17 317 227 HOH HOH . I 4 HOH B 18 318 120 HOH HOH . I 4 HOH B 19 319 53 HOH HOH . I 4 HOH B 20 320 44 HOH HOH . I 4 HOH B 21 321 94 HOH HOH . I 4 HOH B 22 322 25 HOH HOH . I 4 HOH B 23 323 14 HOH HOH . I 4 HOH B 24 324 125 HOH HOH . I 4 HOH B 25 325 170 HOH HOH . I 4 HOH B 26 326 87 HOH HOH . I 4 HOH B 27 327 75 HOH HOH . I 4 HOH B 28 328 117 HOH HOH . I 4 HOH B 29 329 182 HOH HOH . I 4 HOH B 30 330 261 HOH HOH . I 4 HOH B 31 331 219 HOH HOH . I 4 HOH B 32 332 168 HOH HOH . I 4 HOH B 33 333 52 HOH HOH . I 4 HOH B 34 334 102 HOH HOH . I 4 HOH B 35 335 244 HOH HOH . I 4 HOH B 36 336 206 HOH HOH . I 4 HOH B 37 337 97 HOH HOH . I 4 HOH B 38 338 124 HOH HOH . I 4 HOH B 39 339 110 HOH HOH . I 4 HOH B 40 340 151 HOH HOH . I 4 HOH B 41 341 51 HOH HOH . I 4 HOH B 42 342 105 HOH HOH . I 4 HOH B 43 343 283 HOH HOH . I 4 HOH B 44 344 57 HOH HOH . I 4 HOH B 45 345 107 HOH HOH . I 4 HOH B 46 346 185 HOH HOH . I 4 HOH B 47 347 210 HOH HOH . I 4 HOH B 48 348 288 HOH HOH . I 4 HOH B 49 349 239 HOH HOH . I 4 HOH B 50 350 89 HOH HOH . I 4 HOH B 51 351 180 HOH HOH . I 4 HOH B 52 352 77 HOH HOH . I 4 HOH B 53 353 127 HOH HOH . I 4 HOH B 54 354 123 HOH HOH . I 4 HOH B 55 355 31 HOH HOH . I 4 HOH B 56 356 280 HOH HOH . I 4 HOH B 57 357 113 HOH HOH . I 4 HOH B 58 358 129 HOH HOH . I 4 HOH B 59 359 21 HOH HOH . I 4 HOH B 60 360 26 HOH HOH . I 4 HOH B 61 361 34 HOH HOH . I 4 HOH B 62 362 270 HOH HOH . I 4 HOH B 63 363 198 HOH HOH . I 4 HOH B 64 364 187 HOH HOH . I 4 HOH B 65 365 319 HOH HOH . I 4 HOH B 66 366 161 HOH HOH . I 4 HOH B 67 367 162 HOH HOH . I 4 HOH B 68 368 298 HOH HOH . I 4 HOH B 69 369 331 HOH HOH . I 4 HOH B 70 370 132 HOH HOH . I 4 HOH B 71 371 324 HOH HOH . I 4 HOH B 72 372 49 HOH HOH . I 4 HOH B 73 373 29 HOH HOH . I 4 HOH B 74 374 225 HOH HOH . I 4 HOH B 75 375 46 HOH HOH . I 4 HOH B 76 376 273 HOH HOH . I 4 HOH B 77 377 5 HOH HOH . I 4 HOH B 78 378 156 HOH HOH . I 4 HOH B 79 379 226 HOH HOH . I 4 HOH B 80 380 72 HOH HOH . I 4 HOH B 81 381 242 HOH HOH . I 4 HOH B 82 382 193 HOH HOH . I 4 HOH B 83 383 303 HOH HOH . I 4 HOH B 84 384 175 HOH HOH . I 4 HOH B 85 385 173 HOH HOH . I 4 HOH B 86 386 118 HOH HOH . I 4 HOH B 87 387 76 HOH HOH . I 4 HOH B 88 388 196 HOH HOH . I 4 HOH B 89 389 50 HOH HOH . I 4 HOH B 90 390 194 HOH HOH . I 4 HOH B 91 391 211 HOH HOH . I 4 HOH B 92 392 215 HOH HOH . I 4 HOH B 93 393 297 HOH HOH . I 4 HOH B 94 394 186 HOH HOH . I 4 HOH B 95 395 55 HOH HOH . I 4 HOH B 96 396 284 HOH HOH . I 4 HOH B 97 397 172 HOH HOH . I 4 HOH B 98 398 218 HOH HOH . I 4 HOH B 99 399 126 HOH HOH . I 4 HOH B 100 400 237 HOH HOH . I 4 HOH B 101 401 238 HOH HOH . I 4 HOH B 102 402 115 HOH HOH . I 4 HOH B 103 403 37 HOH HOH . I 4 HOH B 104 404 228 HOH HOH . I 4 HOH B 105 405 184 HOH HOH . I 4 HOH B 106 406 133 HOH HOH . I 4 HOH B 107 407 144 HOH HOH . I 4 HOH B 108 408 268 HOH HOH . I 4 HOH B 109 409 192 HOH HOH . I 4 HOH B 110 410 300 HOH HOH . I 4 HOH B 111 411 315 HOH HOH . I 4 HOH B 112 412 103 HOH HOH . I 4 HOH B 113 413 128 HOH HOH . I 4 HOH B 114 414 134 HOH HOH . I 4 HOH B 115 415 224 HOH HOH . I 4 HOH B 116 416 296 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MG _atom_site.label_atom_id MG _atom_site.label_comp_id MG _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id F _atom_site.label_entity_id 2 _atom_site.Cartn_x -14.013 _atom_site.Cartn_y 43.09 _atom_site.Cartn_z -44.409 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 30 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id MG _atom_site.auth_comp_id MG _atom_site.auth_seq_id 202 _atom_site.auth_asym_id B _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 65 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 284 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 1 #