data_6ZIO # _model_server_result.job_id yasjKN_TrXWI8VYPIKjscg _model_server_result.datetime_utc '2024-10-19 09:34:12' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6zio # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":203}' # _entry.id 6ZIO # _exptl.entry_id 6ZIO _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 443.201 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "GUANOSINE-5'-DIPHOSPHATE" _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 78.83 _cell.angle_beta 75.24 _cell.angle_gamma 64.7 _cell.entry_id 6ZIO _cell.length_a 37.174 _cell.length_b 37.161 _cell.length_c 66.245 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6ZIO _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 G N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OG SER 18 A SER 17 1_555 C MG MG . A MG 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.151 ? metalc ? metalc2 C MG MG . A MG 201 1_555 D O2B GDP . A GDP 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.237 ? metalc ? metalc3 C MG MG . A MG 201 1_555 H O HOH . A HOH 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.229 ? metalc ? metalc4 C MG MG . A MG 201 1_555 H O HOH . A HOH 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.087 ? metalc ? metalc5 C MG MG . A MG 201 1_555 H O HOH . A HOH 309 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.225 ? metalc ? metalc6 C MG MG . A MG 201 1_555 H O HOH . A HOH 369 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.051 ? metalc ? metalc7 B OG SER 18 B SER 17 1_555 E MG MG . B MG 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.121 ? metalc ? metalc8 B O ALA 19 B ALA 18 1_555 F MG MG . B MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.573 ? metalc ? metalc9 B O HIS 28 B HIS 27 1_555 F MG MG . B MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.789 ? metalc ? metalc10 E MG MG . B MG 201 1_555 G O1B GDP . B GDP 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.409 ? metalc ? metalc11 E MG MG . B MG 201 1_555 I O HOH . B HOH 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.129 ? metalc ? metalc12 E MG MG . B MG 201 1_555 I O HOH . B HOH 312 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.016 ? metalc ? metalc13 E MG MG . B MG 201 1_555 I O HOH . B HOH 314 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.084 ? metalc ? metalc14 E MG MG . B MG 201 1_555 I O HOH . B HOH 315 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? # _chem_comp.formula 'C10 H15 N5 O11 P2' _chem_comp.formula_weight 443.201 _chem_comp.id GDP _chem_comp.mon_nstd_flag n _chem_comp.name "GUANOSINE-5'-DIPHOSPHATE" _chem_comp.type 'rna linking' _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PB O1B GDP doub 83 n n PB O2B GDP sing 84 n n PB O3B GDP sing 85 n n PB O3A GDP sing 86 n n O2B HOB2 GDP sing 87 n n O3B HOB3 GDP sing 88 n n O3A PA GDP sing 89 n n PA O1A GDP doub 90 n n PA O2A GDP sing 91 n n PA O5' GDP sing 92 n n O2A HOA2 GDP sing 93 n n O5' C5' GDP sing 94 n n C5' C4' GDP sing 95 n n C5' H5' GDP sing 96 n n C5' "H5''" GDP sing 97 n n C4' O4' GDP sing 98 n n C4' C3' GDP sing 99 n n C4' H4' GDP sing 100 n n O4' C1' GDP sing 101 n n C3' O3' GDP sing 102 n n C3' C2' GDP sing 103 n n C3' H3' GDP sing 104 n n O3' HO3' GDP sing 105 n n C2' O2' GDP sing 106 n n C2' C1' GDP sing 107 n n C2' H2' GDP sing 108 n n O2' HO2' GDP sing 109 n n C1' N9 GDP sing 110 n n C1' H1' GDP sing 111 n n N9 C8 GDP sing 112 n y N9 C4 GDP sing 113 n y C8 N7 GDP doub 114 n y C8 H8 GDP sing 115 n n N7 C5 GDP sing 116 n y C5 C6 GDP sing 117 n n C5 C4 GDP doub 118 n y C6 O6 GDP doub 119 n n C6 N1 GDP sing 120 n n N1 C2 GDP sing 121 n n N1 HN1 GDP sing 122 n n C2 N2 GDP sing 123 n n C2 N3 GDP doub 124 n n N2 HN21 GDP sing 125 n n N2 HN22 GDP sing 126 n n N3 C4 GDP sing 127 n n # _atom_sites.entry_id 6ZIO _atom_sites.fract_transf_matrix[1][1] 0.026901 _atom_sites.fract_transf_matrix[1][2] -0.012716 _atom_sites.fract_transf_matrix[1][3] -0.005881 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.029765 _atom_sites.fract_transf_matrix[2][3] -0.002902 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.015685 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 MG A 1 201 1 MG MG . D 3 GDP A 1 202 201 GDP GDP . E 2 MG B 1 201 2 MG MG . F 2 MG B 1 202 3 MG MG . G 3 GDP B 1 203 202 GDP GDP . H 4 HOH A 1 301 135 HOH HOH . H 4 HOH A 2 302 10 HOH HOH . H 4 HOH A 3 303 84 HOH HOH . H 4 HOH A 4 304 106 HOH HOH . H 4 HOH A 5 305 16 HOH HOH . H 4 HOH A 6 306 24 HOH HOH . H 4 HOH A 7 307 189 HOH HOH . H 4 HOH A 8 308 157 HOH HOH . H 4 HOH A 9 309 20 HOH HOH . H 4 HOH A 10 310 7 HOH HOH . H 4 HOH A 11 311 96 HOH HOH . H 4 HOH A 12 312 91 HOH HOH . H 4 HOH A 13 313 17 HOH HOH . H 4 HOH A 14 314 277 HOH HOH . H 4 HOH A 15 315 154 HOH HOH . H 4 HOH A 16 316 179 HOH HOH . H 4 HOH A 17 317 217 HOH HOH . H 4 HOH A 18 318 316 HOH HOH . H 4 HOH A 19 319 6 HOH HOH . H 4 HOH A 20 320 109 HOH HOH . H 4 HOH A 21 321 163 HOH HOH . H 4 HOH A 22 322 28 HOH HOH . H 4 HOH A 23 323 42 HOH HOH . H 4 HOH A 24 324 69 HOH HOH . H 4 HOH A 25 325 92 HOH HOH . H 4 HOH A 26 326 66 HOH HOH . H 4 HOH A 27 327 138 HOH HOH . H 4 HOH A 28 328 74 HOH HOH . H 4 HOH A 29 329 203 HOH HOH . H 4 HOH A 30 330 160 HOH HOH . H 4 HOH A 31 331 320 HOH HOH . H 4 HOH A 32 332 155 HOH HOH . H 4 HOH A 33 333 131 HOH HOH . H 4 HOH A 34 334 153 HOH HOH . H 4 HOH A 35 335 332 HOH HOH . H 4 HOH A 36 336 83 HOH HOH . H 4 HOH A 37 337 317 HOH HOH . H 4 HOH A 38 338 112 HOH HOH . H 4 HOH A 39 339 236 HOH HOH . H 4 HOH A 40 340 176 HOH HOH . H 4 HOH A 41 341 70 HOH HOH . H 4 HOH A 42 342 90 HOH HOH . H 4 HOH A 43 343 39 HOH HOH . H 4 HOH A 44 344 279 HOH HOH . H 4 HOH A 45 345 56 HOH HOH . H 4 HOH A 46 346 99 HOH HOH . H 4 HOH A 47 347 82 HOH HOH . H 4 HOH A 48 348 245 HOH HOH . H 4 HOH A 49 349 121 HOH HOH . H 4 HOH A 50 350 58 HOH HOH . H 4 HOH A 51 351 266 HOH HOH . H 4 HOH A 52 352 81 HOH HOH . H 4 HOH A 53 353 63 HOH HOH . H 4 HOH A 54 354 183 HOH HOH . H 4 HOH A 55 355 253 HOH HOH . H 4 HOH A 56 356 33 HOH HOH . H 4 HOH A 57 357 15 HOH HOH . H 4 HOH A 58 358 302 HOH HOH . H 4 HOH A 59 359 174 HOH HOH . H 4 HOH A 60 360 60 HOH HOH . H 4 HOH A 61 361 62 HOH HOH . H 4 HOH A 62 362 233 HOH HOH . H 4 HOH A 63 363 323 HOH HOH . H 4 HOH A 64 364 100 HOH HOH . H 4 HOH A 65 365 188 HOH HOH . H 4 HOH A 66 366 202 HOH HOH . H 4 HOH A 67 367 181 HOH HOH . H 4 HOH A 68 368 195 HOH HOH . H 4 HOH A 69 369 78 HOH HOH . H 4 HOH A 70 370 61 HOH HOH . H 4 HOH A 71 371 311 HOH HOH . H 4 HOH A 72 372 47 HOH HOH . H 4 HOH A 73 373 167 HOH HOH . H 4 HOH A 74 374 108 HOH HOH . H 4 HOH A 75 375 216 HOH HOH . H 4 HOH A 76 376 322 HOH HOH . H 4 HOH A 77 377 54 HOH HOH . H 4 HOH A 78 378 318 HOH HOH . H 4 HOH A 79 379 220 HOH HOH . H 4 HOH A 80 380 263 HOH HOH . H 4 HOH A 81 381 205 HOH HOH . H 4 HOH A 82 382 321 HOH HOH . H 4 HOH A 83 383 200 HOH HOH . H 4 HOH A 84 384 165 HOH HOH . H 4 HOH A 85 385 59 HOH HOH . H 4 HOH A 86 386 229 HOH HOH . H 4 HOH A 87 387 86 HOH HOH . H 4 HOH A 88 388 310 HOH HOH . H 4 HOH A 89 389 232 HOH HOH . H 4 HOH A 90 390 325 HOH HOH . H 4 HOH A 91 391 65 HOH HOH . H 4 HOH A 92 392 71 HOH HOH . H 4 HOH A 93 393 190 HOH HOH . H 4 HOH A 94 394 119 HOH HOH . H 4 HOH A 95 395 3 HOH HOH . H 4 HOH A 96 396 246 HOH HOH . H 4 HOH A 97 397 214 HOH HOH . H 4 HOH A 98 398 152 HOH HOH . H 4 HOH A 99 399 231 HOH HOH . H 4 HOH A 100 400 235 HOH HOH . H 4 HOH A 101 401 243 HOH HOH . H 4 HOH A 102 402 13 HOH HOH . H 4 HOH A 103 403 221 HOH HOH . H 4 HOH A 104 404 137 HOH HOH . H 4 HOH A 105 405 213 HOH HOH . H 4 HOH A 106 406 191 HOH HOH . H 4 HOH A 107 407 314 HOH HOH . H 4 HOH A 108 408 38 HOH HOH . H 4 HOH A 109 409 64 HOH HOH . H 4 HOH A 110 410 278 HOH HOH . H 4 HOH A 111 411 272 HOH HOH . H 4 HOH A 112 412 88 HOH HOH . H 4 HOH A 113 413 35 HOH HOH . H 4 HOH A 114 414 150 HOH HOH . H 4 HOH A 115 415 169 HOH HOH . H 4 HOH A 116 416 281 HOH HOH . H 4 HOH A 117 417 145 HOH HOH . H 4 HOH A 118 418 208 HOH HOH . H 4 HOH A 119 419 241 HOH HOH . H 4 HOH A 120 420 299 HOH HOH . H 4 HOH A 121 421 139 HOH HOH . H 4 HOH A 122 422 177 HOH HOH . H 4 HOH A 123 423 23 HOH HOH . H 4 HOH A 124 424 222 HOH HOH . H 4 HOH A 125 425 122 HOH HOH . H 4 HOH A 126 426 212 HOH HOH . H 4 HOH A 127 427 114 HOH HOH . H 4 HOH A 128 428 304 HOH HOH . H 4 HOH A 129 429 327 HOH HOH . H 4 HOH A 130 430 98 HOH HOH . H 4 HOH A 131 431 305 HOH HOH . H 4 HOH A 132 432 116 HOH HOH . H 4 HOH A 133 433 104 HOH HOH . H 4 HOH A 134 434 301 HOH HOH . H 4 HOH A 135 435 143 HOH HOH . H 4 HOH A 136 436 130 HOH HOH . H 4 HOH A 137 437 101 HOH HOH . H 4 HOH A 138 438 209 HOH HOH . I 4 HOH B 1 301 1 HOH HOH . I 4 HOH B 2 302 11 HOH HOH . I 4 HOH B 3 303 41 HOH HOH . I 4 HOH B 4 304 19 HOH HOH . I 4 HOH B 5 305 171 HOH HOH . I 4 HOH B 6 306 306 HOH HOH . I 4 HOH B 7 307 276 HOH HOH . I 4 HOH B 8 308 79 HOH HOH . I 4 HOH B 9 309 2 HOH HOH . I 4 HOH B 10 310 111 HOH HOH . I 4 HOH B 11 311 240 HOH HOH . I 4 HOH B 12 312 43 HOH HOH . I 4 HOH B 13 313 148 HOH HOH . I 4 HOH B 14 314 40 HOH HOH . I 4 HOH B 15 315 18 HOH HOH . I 4 HOH B 16 316 68 HOH HOH . I 4 HOH B 17 317 227 HOH HOH . I 4 HOH B 18 318 120 HOH HOH . I 4 HOH B 19 319 53 HOH HOH . I 4 HOH B 20 320 44 HOH HOH . I 4 HOH B 21 321 94 HOH HOH . I 4 HOH B 22 322 25 HOH HOH . I 4 HOH B 23 323 14 HOH HOH . I 4 HOH B 24 324 125 HOH HOH . I 4 HOH B 25 325 170 HOH HOH . I 4 HOH B 26 326 87 HOH HOH . I 4 HOH B 27 327 75 HOH HOH . I 4 HOH B 28 328 117 HOH HOH . I 4 HOH B 29 329 182 HOH HOH . I 4 HOH B 30 330 261 HOH HOH . I 4 HOH B 31 331 219 HOH HOH . I 4 HOH B 32 332 168 HOH HOH . I 4 HOH B 33 333 52 HOH HOH . I 4 HOH B 34 334 102 HOH HOH . I 4 HOH B 35 335 244 HOH HOH . I 4 HOH B 36 336 206 HOH HOH . I 4 HOH B 37 337 97 HOH HOH . I 4 HOH B 38 338 124 HOH HOH . I 4 HOH B 39 339 110 HOH HOH . I 4 HOH B 40 340 151 HOH HOH . I 4 HOH B 41 341 51 HOH HOH . I 4 HOH B 42 342 105 HOH HOH . I 4 HOH B 43 343 283 HOH HOH . I 4 HOH B 44 344 57 HOH HOH . I 4 HOH B 45 345 107 HOH HOH . I 4 HOH B 46 346 185 HOH HOH . I 4 HOH B 47 347 210 HOH HOH . I 4 HOH B 48 348 288 HOH HOH . I 4 HOH B 49 349 239 HOH HOH . I 4 HOH B 50 350 89 HOH HOH . I 4 HOH B 51 351 180 HOH HOH . I 4 HOH B 52 352 77 HOH HOH . I 4 HOH B 53 353 127 HOH HOH . I 4 HOH B 54 354 123 HOH HOH . I 4 HOH B 55 355 31 HOH HOH . I 4 HOH B 56 356 280 HOH HOH . I 4 HOH B 57 357 113 HOH HOH . I 4 HOH B 58 358 129 HOH HOH . I 4 HOH B 59 359 21 HOH HOH . I 4 HOH B 60 360 26 HOH HOH . I 4 HOH B 61 361 34 HOH HOH . I 4 HOH B 62 362 270 HOH HOH . I 4 HOH B 63 363 198 HOH HOH . I 4 HOH B 64 364 187 HOH HOH . I 4 HOH B 65 365 319 HOH HOH . I 4 HOH B 66 366 161 HOH HOH . I 4 HOH B 67 367 162 HOH HOH . I 4 HOH B 68 368 298 HOH HOH . I 4 HOH B 69 369 331 HOH HOH . I 4 HOH B 70 370 132 HOH HOH . I 4 HOH B 71 371 324 HOH HOH . I 4 HOH B 72 372 49 HOH HOH . I 4 HOH B 73 373 29 HOH HOH . I 4 HOH B 74 374 225 HOH HOH . I 4 HOH B 75 375 46 HOH HOH . I 4 HOH B 76 376 273 HOH HOH . I 4 HOH B 77 377 5 HOH HOH . I 4 HOH B 78 378 156 HOH HOH . I 4 HOH B 79 379 226 HOH HOH . I 4 HOH B 80 380 72 HOH HOH . I 4 HOH B 81 381 242 HOH HOH . I 4 HOH B 82 382 193 HOH HOH . I 4 HOH B 83 383 303 HOH HOH . I 4 HOH B 84 384 175 HOH HOH . I 4 HOH B 85 385 173 HOH HOH . I 4 HOH B 86 386 118 HOH HOH . I 4 HOH B 87 387 76 HOH HOH . I 4 HOH B 88 388 196 HOH HOH . I 4 HOH B 89 389 50 HOH HOH . I 4 HOH B 90 390 194 HOH HOH . I 4 HOH B 91 391 211 HOH HOH . I 4 HOH B 92 392 215 HOH HOH . I 4 HOH B 93 393 297 HOH HOH . I 4 HOH B 94 394 186 HOH HOH . I 4 HOH B 95 395 55 HOH HOH . I 4 HOH B 96 396 284 HOH HOH . I 4 HOH B 97 397 172 HOH HOH . I 4 HOH B 98 398 218 HOH HOH . I 4 HOH B 99 399 126 HOH HOH . I 4 HOH B 100 400 237 HOH HOH . I 4 HOH B 101 401 238 HOH HOH . I 4 HOH B 102 402 115 HOH HOH . I 4 HOH B 103 403 37 HOH HOH . I 4 HOH B 104 404 228 HOH HOH . I 4 HOH B 105 405 184 HOH HOH . I 4 HOH B 106 406 133 HOH HOH . I 4 HOH B 107 407 144 HOH HOH . I 4 HOH B 108 408 268 HOH HOH . I 4 HOH B 109 409 192 HOH HOH . I 4 HOH B 110 410 300 HOH HOH . I 4 HOH B 111 411 315 HOH HOH . I 4 HOH B 112 412 103 HOH HOH . I 4 HOH B 113 413 128 HOH HOH . I 4 HOH B 114 414 134 HOH HOH . I 4 HOH B 115 415 224 HOH HOH . I 4 HOH B 116 416 296 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PB GDP . . . G 3 -18.222 37 -38.032 1 5.83 ? PB GDP 203 B 1 HETATM 2 O O1B GDP . . . G 3 -17.569 36.567 -39.348 1 5.02 ? O1B GDP 203 B 1 HETATM 3 O O2B GDP . . . G 3 -19.584 36.351 -37.801 1 9.88 ? O2B GDP 203 B 1 HETATM 4 O O3B GDP . . . G 3 -17.253 36.819 -36.873 1 3.56 ? O3B GDP 203 B 1 HETATM 5 O O3A GDP . . . G 3 -18.425 38.572 -38.209 1 5.06 ? O3A GDP 203 B 1 HETATM 6 P PA GDP . . . G 3 -18.597 39.489 -39.503 1 4.92 ? PA GDP 203 B 1 HETATM 7 O O1A GDP . . . G 3 -19.629 38.888 -40.379 1 7.98 ? O1A GDP 203 B 1 HETATM 8 O O2A GDP . . . G 3 -17.271 39.642 -40.209 1 7.13 ? O2A GDP 203 B 1 HETATM 9 O O5' GDP . . . G 3 -19.024 40.89 -38.933 1 3.93 ? O5' GDP 203 B 1 HETATM 10 C C5' GDP . . . G 3 -20.194 41.063 -38.102 1 3.54 ? C5' GDP 203 B 1 HETATM 11 C C4' GDP . . . G 3 -20.614 42.515 -38.155 1 3.05 ? C4' GDP 203 B 1 HETATM 12 O O4' GDP . . . G 3 -19.645 43.329 -37.454 1 4.93 ? O4' GDP 203 B 1 HETATM 13 C C3' GDP . . . G 3 -20.738 43.117 -39.555 1 3.54 ? C3' GDP 203 B 1 HETATM 14 O O3' GDP . . . G 3 -21.871 43.974 -39.624 1 5.81 ? O3' GDP 203 B 1 HETATM 15 C C2' GDP . . . G 3 -19.4 43.841 -39.735 1 3 ? C2' GDP 203 B 1 HETATM 16 O O2' GDP . . . G 3 -19.426 44.927 -40.648 1 4.11 ? O2' GDP 203 B 1 HETATM 17 C C1' GDP . . . G 3 -19.138 44.332 -38.315 1 3.8 ? C1' GDP 203 B 1 HETATM 18 N N9 GDP . . . G 3 -17.71 44.528 -38.013 1 3.93 ? N9 GDP 203 B 1 HETATM 19 C C8 GDP . . . G 3 -16.702 43.616 -38.181 1 3.14 ? C8 GDP 203 B 1 HETATM 20 N N7 GDP . . . G 3 -15.522 44.068 -37.832 1 3 ? N7 GDP 203 B 1 HETATM 21 C C5 GDP . . . G 3 -15.767 45.362 -37.404 1 3 ? C5 GDP 203 B 1 HETATM 22 C C6 GDP . . . G 3 -14.883 46.374 -36.868 1 3.86 ? C6 GDP 203 B 1 HETATM 23 O O6 GDP . . . G 3 -13.667 46.302 -36.72 1 4.29 ? O6 GDP 203 B 1 HETATM 24 N N1 GDP . . . G 3 -15.565 47.517 -36.497 1 5.44 ? N1 GDP 203 B 1 HETATM 25 C C2 GDP . . . G 3 -16.917 47.707 -36.618 1 5.08 ? C2 GDP 203 B 1 HETATM 26 N N2 GDP . . . G 3 -17.401 48.875 -36.192 1 3 ? N2 GDP 203 B 1 HETATM 27 N N3 GDP . . . G 3 -17.745 46.794 -37.13 1 4.6 ? N3 GDP 203 B 1 HETATM 28 C C4 GDP . . . G 3 -17.114 45.657 -37.5 1 3.64 ? C4 GDP 203 B 1 # _model_server_stats.io_time_ms 0 _model_server_stats.parse_time_ms 24 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 278 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 28 #