data_6ZJ1 # _model_server_result.job_id iygtf3WXXZbTzpfcvQhufg _model_server_result.datetime_utc '2024-11-27 09:15:39' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6zj1 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":501}' # _entry.id 6ZJ1 # _exptl.entry_id 6ZJ1 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 24.305 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MAGNESIUM ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 6ZJ1 _cell.length_a 129.414 _cell.length_b 129.414 _cell.length_c 50.201 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6ZJ1 _symmetry.cell_setting ? _symmetry.Int_Tables_number 171 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 62' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _pdbx_entity_branch.entity_id 2 _pdbx_entity_branch.type oligosaccharide # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.details _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.atom_stereo_config_1 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.atom_stereo_config_2 _pdbx_entity_branch_link.value_order 1 ? 2 2 1 MAN MMA C1 O1 . O2 HO2 . sing 2 ? 2 3 2 MAN MAN C1 O1 . O2 HO2 . sing 3 ? 2 4 3 GLC MAN C1 O1 . O3 HO3 . sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 2 n B MMA 1 AdA 1 MMA AdA 507 MMA 2 n B MAN 2 AdA 2 MAN AeA 506 MAN 2 n B MAN 3 AdA 3 MAN AfA 505 MAN 2 n B GLC 4 AdA 4 GLC AgA 504 GLC # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 B O2 MMA . AdA MMA 1 1_555 B C1 MAN . AdA MAN 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.436 ? covale ? covale2 B O2 MAN . AdA MAN 2 1_555 B C1 MAN . AdA MAN 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.449 ? covale ? covale3 B O3 MAN . AdA MAN 3 1_555 B C1 GLC . AdA GLC 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.457 ? metalc ? metalc1 C MG MG . AAA MG 501 1_555 D O2 TEW . AAA TEW 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.225 ? metalc ? metalc2 C MG MG . AAA MG 501 1_555 F O HOH . AAA HOH 613 6_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.189 ? # _chem_comp.formula 'Mg 2' _chem_comp.formula_weight 24.305 _chem_comp.id MG _chem_comp.mon_nstd_flag . _chem_comp.name 'MAGNESIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 6ZJ1 _atom_sites.fract_transf_matrix[1][1] 0.007727 _atom_sites.fract_transf_matrix[1][2] 0.004461 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008923 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01992 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 MG AAA 1 501 501 MG MG . D 4 TEW AAA 1 502 502 TEW TEW . E 4 TEW AAA 1 503 503 TEW TEW . F 5 HOH AAA 1 601 610 HOH HOH . F 5 HOH AAA 2 602 608 HOH HOH . F 5 HOH AAA 3 603 717 HOH HOH . F 5 HOH AAA 4 604 609 HOH HOH . F 5 HOH AAA 5 605 606 HOH HOH . F 5 HOH AAA 6 606 658 HOH HOH . F 5 HOH AAA 7 607 649 HOH HOH . F 5 HOH AAA 8 608 652 HOH HOH . F 5 HOH AAA 9 609 643 HOH HOH . F 5 HOH AAA 10 610 687 HOH HOH . F 5 HOH AAA 11 611 714 HOH HOH . F 5 HOH AAA 12 612 629 HOH HOH . F 5 HOH AAA 13 613 680 HOH HOH . F 5 HOH AAA 14 614 721 HOH HOH . F 5 HOH AAA 15 615 612 HOH HOH . F 5 HOH AAA 16 616 644 HOH HOH . F 5 HOH AAA 17 617 663 HOH HOH . F 5 HOH AAA 18 618 619 HOH HOH . F 5 HOH AAA 19 619 625 HOH HOH . F 5 HOH AAA 20 620 711 HOH HOH . F 5 HOH AAA 21 621 718 HOH HOH . F 5 HOH AAA 22 622 682 HOH HOH . F 5 HOH AAA 23 623 692 HOH HOH . F 5 HOH AAA 24 624 620 HOH HOH . F 5 HOH AAA 25 625 611 HOH HOH . F 5 HOH AAA 26 626 690 HOH HOH . F 5 HOH AAA 27 627 685 HOH HOH . F 5 HOH AAA 28 628 728 HOH HOH . F 5 HOH AAA 29 629 726 HOH HOH . F 5 HOH AAA 30 630 637 HOH HOH . F 5 HOH AAA 31 631 645 HOH HOH . F 5 HOH AAA 32 632 700 HOH HOH . F 5 HOH AAA 33 633 729 HOH HOH . F 5 HOH AAA 34 634 722 HOH HOH . F 5 HOH AAA 35 635 694 HOH HOH . F 5 HOH AAA 36 636 732 HOH HOH . F 5 HOH AAA 37 637 661 HOH HOH . F 5 HOH AAA 38 638 688 HOH HOH . F 5 HOH AAA 39 639 632 HOH HOH . F 5 HOH AAA 40 640 725 HOH HOH . F 5 HOH AAA 41 641 630 HOH HOH . F 5 HOH AAA 42 642 670 HOH HOH . F 5 HOH AAA 43 643 669 HOH HOH . F 5 HOH AAA 44 644 602 HOH HOH . F 5 HOH AAA 45 645 702 HOH HOH . F 5 HOH AAA 46 646 634 HOH HOH . F 5 HOH AAA 47 647 689 HOH HOH . F 5 HOH AAA 48 648 614 HOH HOH . F 5 HOH AAA 49 649 675 HOH HOH . F 5 HOH AAA 50 650 659 HOH HOH . F 5 HOH AAA 51 651 693 HOH HOH . F 5 HOH AAA 52 652 627 HOH HOH . F 5 HOH AAA 53 653 691 HOH HOH . F 5 HOH AAA 54 654 695 HOH HOH . F 5 HOH AAA 55 655 617 HOH HOH . F 5 HOH AAA 56 656 720 HOH HOH . F 5 HOH AAA 57 657 674 HOH HOH . F 5 HOH AAA 58 658 686 HOH HOH . F 5 HOH AAA 59 659 665 HOH HOH . F 5 HOH AAA 60 660 623 HOH HOH . F 5 HOH AAA 61 661 697 HOH HOH . F 5 HOH AAA 62 662 671 HOH HOH . F 5 HOH AAA 63 663 698 HOH HOH . F 5 HOH AAA 64 664 657 HOH HOH . F 5 HOH AAA 65 665 701 HOH HOH . F 5 HOH AAA 66 666 713 HOH HOH . F 5 HOH AAA 67 667 653 HOH HOH . F 5 HOH AAA 68 668 624 HOH HOH . F 5 HOH AAA 69 669 616 HOH HOH . F 5 HOH AAA 70 670 696 HOH HOH . F 5 HOH AAA 71 671 655 HOH HOH . F 5 HOH AAA 72 672 723 HOH HOH . F 5 HOH AAA 73 673 638 HOH HOH . F 5 HOH AAA 74 674 673 HOH HOH . F 5 HOH AAA 75 675 733 HOH HOH . F 5 HOH AAA 76 676 633 HOH HOH . F 5 HOH AAA 77 677 727 HOH HOH . F 5 HOH AAA 78 678 618 HOH HOH . F 5 HOH AAA 79 679 667 HOH HOH . F 5 HOH AAA 80 680 719 HOH HOH . F 5 HOH AAA 81 681 605 HOH HOH . F 5 HOH AAA 82 682 640 HOH HOH . F 5 HOH AAA 83 683 706 HOH HOH . F 5 HOH AAA 84 684 613 HOH HOH . F 5 HOH AAA 85 685 648 HOH HOH . F 5 HOH AAA 86 686 679 HOH HOH . F 5 HOH AAA 87 687 621 HOH HOH . F 5 HOH AAA 88 688 678 HOH HOH . F 5 HOH AAA 89 689 699 HOH HOH . F 5 HOH AAA 90 690 622 HOH HOH . F 5 HOH AAA 91 691 676 HOH HOH . F 5 HOH AAA 92 692 662 HOH HOH . F 5 HOH AAA 93 693 654 HOH HOH . F 5 HOH AAA 94 694 707 HOH HOH . F 5 HOH AAA 95 695 731 HOH HOH . F 5 HOH AAA 96 696 672 HOH HOH . F 5 HOH AAA 97 697 677 HOH HOH . F 5 HOH AAA 98 698 603 HOH HOH . F 5 HOH AAA 99 699 668 HOH HOH . F 5 HOH AAA 100 700 626 HOH HOH . F 5 HOH AAA 101 701 724 HOH HOH . F 5 HOH AAA 102 702 628 HOH HOH . F 5 HOH AAA 103 703 607 HOH HOH . F 5 HOH AAA 104 704 712 HOH HOH . F 5 HOH AAA 105 705 615 HOH HOH . F 5 HOH AAA 106 706 666 HOH HOH . F 5 HOH AAA 107 707 631 HOH HOH . F 5 HOH AAA 108 708 650 HOH HOH . F 5 HOH AAA 109 709 703 HOH HOH . F 5 HOH AAA 110 710 681 HOH HOH . F 5 HOH AAA 111 711 646 HOH HOH . F 5 HOH AAA 112 712 660 HOH HOH . F 5 HOH AAA 113 713 684 HOH HOH . F 5 HOH AAA 114 714 604 HOH HOH . F 5 HOH AAA 115 715 664 HOH HOH . F 5 HOH AAA 116 716 635 HOH HOH . F 5 HOH AAA 117 717 601 HOH HOH . F 5 HOH AAA 118 718 641 HOH HOH . F 5 HOH AAA 119 719 683 HOH HOH . F 5 HOH AAA 120 720 708 HOH HOH . F 5 HOH AAA 121 721 710 HOH HOH . F 5 HOH AAA 122 722 709 HOH HOH . F 5 HOH AAA 123 723 730 HOH HOH . F 5 HOH AAA 124 724 642 HOH HOH . F 5 HOH AAA 125 725 716 HOH HOH . F 5 HOH AAA 126 726 704 HOH HOH . F 5 HOH AAA 127 727 705 HOH HOH . F 5 HOH AAA 128 728 647 HOH HOH . F 5 HOH AAA 129 729 651 HOH HOH . F 5 HOH AAA 130 730 656 HOH HOH . F 5 HOH AAA 131 731 636 HOH HOH . F 5 HOH AAA 132 732 639 HOH HOH . F 5 HOH AAA 133 733 715 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MG _atom_site.label_atom_id MG _atom_site.label_comp_id MG _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id C _atom_site.label_entity_id 3 _atom_site.Cartn_x 22.262 _atom_site.Cartn_y 29.944 _atom_site.Cartn_z 1.479 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 53.77 _atom_site.pdbx_formal_charge 0 _atom_site.auth_atom_id MG _atom_site.auth_comp_id MG _atom_site.auth_seq_id 501 _atom_site.auth_asym_id AAA _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 15 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 242 _model_server_stats.encode_time_ms 10 _model_server_stats.element_count 1 #