data_6ZJ5 # _model_server_result.job_id NSkPOyTUt5E7PNpWeU1GKw _model_server_result.datetime_utc '2024-11-06 03:06:54' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6zj5 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":504}' # _entry.id 6ZJ5 # _exptl.entry_id 6ZJ5 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 24.305 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MAGNESIUM ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 6ZJ5 _cell.length_a 128.549 _cell.length_b 128.549 _cell.length_c 48.264 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6ZJ5 _symmetry.cell_setting ? _symmetry.Int_Tables_number 171 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 62' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 I O3 DMJ . AAA DMJ 508 1_555 J C1 GLC . AAA GLC 509 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.436 ? metalc ? metalc1 E MG MG . AAA MG 504 1_555 F O5 TEW . AAA TEW 505 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.429 ? metalc ? metalc2 E MG MG . AAA MG 504 1_555 K O HOH . AAA HOH 652 6_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.466 ? # _chem_comp.formula 'Mg 2' _chem_comp.formula_weight 24.305 _chem_comp.id MG _chem_comp.mon_nstd_flag . _chem_comp.name 'MAGNESIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 6ZJ5 _atom_sites.fract_transf_matrix[1][1] 0.007779 _atom_sites.fract_transf_matrix[1][2] 0.004491 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008983 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.020719 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 EPE AAA 1 501 501 EPE EPE . C 2 EPE AAA 1 502 502 EPE EPE . D 2 EPE AAA 1 503 503 EPE EPE . E 3 MG AAA 1 504 505 MG MG . F 4 TEW AAA 1 505 506 TEW TEW . G 4 TEW AAA 1 506 507 TEW TEW . H 4 TEW AAA 1 507 508 TEW TEW . I 5 DMJ AAA 1 508 510 DMJ DMJ . J 6 GLC AAA 1 509 509 GLC GLC . K 7 HOH AAA 1 601 687 HOH HOH . K 7 HOH AAA 2 602 644 HOH HOH . K 7 HOH AAA 3 603 671 HOH HOH . K 7 HOH AAA 4 604 649 HOH HOH . K 7 HOH AAA 5 605 678 HOH HOH . K 7 HOH AAA 6 606 642 HOH HOH . K 7 HOH AAA 7 607 674 HOH HOH . K 7 HOH AAA 8 608 668 HOH HOH . K 7 HOH AAA 9 609 672 HOH HOH . K 7 HOH AAA 10 610 681 HOH HOH . K 7 HOH AAA 11 611 637 HOH HOH . K 7 HOH AAA 12 612 667 HOH HOH . K 7 HOH AAA 13 613 639 HOH HOH . K 7 HOH AAA 14 614 640 HOH HOH . K 7 HOH AAA 15 615 693 HOH HOH . K 7 HOH AAA 16 616 669 HOH HOH . K 7 HOH AAA 17 617 611 HOH HOH . K 7 HOH AAA 18 618 660 HOH HOH . K 7 HOH AAA 19 619 648 HOH HOH . K 7 HOH AAA 20 620 652 HOH HOH . K 7 HOH AAA 21 621 604 HOH HOH . K 7 HOH AAA 22 622 646 HOH HOH . K 7 HOH AAA 23 623 664 HOH HOH . K 7 HOH AAA 24 624 629 HOH HOH . K 7 HOH AAA 25 625 641 HOH HOH . K 7 HOH AAA 26 626 682 HOH HOH . K 7 HOH AAA 27 627 609 HOH HOH . K 7 HOH AAA 28 628 666 HOH HOH . K 7 HOH AAA 29 629 657 HOH HOH . K 7 HOH AAA 30 630 634 HOH HOH . K 7 HOH AAA 31 631 647 HOH HOH . K 7 HOH AAA 32 632 650 HOH HOH . K 7 HOH AAA 33 633 638 HOH HOH . K 7 HOH AAA 34 634 670 HOH HOH . K 7 HOH AAA 35 635 627 HOH HOH . K 7 HOH AAA 36 636 608 HOH HOH . K 7 HOH AAA 37 637 680 HOH HOH . K 7 HOH AAA 38 638 683 HOH HOH . K 7 HOH AAA 39 639 607 HOH HOH . K 7 HOH AAA 40 640 651 HOH HOH . K 7 HOH AAA 41 641 661 HOH HOH . K 7 HOH AAA 42 642 633 HOH HOH . K 7 HOH AAA 43 643 610 HOH HOH . K 7 HOH AAA 44 644 689 HOH HOH . K 7 HOH AAA 45 645 626 HOH HOH . K 7 HOH AAA 46 646 677 HOH HOH . K 7 HOH AAA 47 647 635 HOH HOH . K 7 HOH AAA 48 648 684 HOH HOH . K 7 HOH AAA 49 649 692 HOH HOH . K 7 HOH AAA 50 650 665 HOH HOH . K 7 HOH AAA 51 651 694 HOH HOH . K 7 HOH AAA 52 652 631 HOH HOH . K 7 HOH AAA 53 653 621 HOH HOH . K 7 HOH AAA 54 654 675 HOH HOH . K 7 HOH AAA 55 655 612 HOH HOH . K 7 HOH AAA 56 656 602 HOH HOH . K 7 HOH AAA 57 657 622 HOH HOH . K 7 HOH AAA 58 658 636 HOH HOH . K 7 HOH AAA 59 659 685 HOH HOH . K 7 HOH AAA 60 660 613 HOH HOH . K 7 HOH AAA 61 661 628 HOH HOH . K 7 HOH AAA 62 662 618 HOH HOH . K 7 HOH AAA 63 663 601 HOH HOH . K 7 HOH AAA 64 664 630 HOH HOH . K 7 HOH AAA 65 665 691 HOH HOH . K 7 HOH AAA 66 666 645 HOH HOH . K 7 HOH AAA 67 667 603 HOH HOH . K 7 HOH AAA 68 668 653 HOH HOH . K 7 HOH AAA 69 669 654 HOH HOH . K 7 HOH AAA 70 670 659 HOH HOH . K 7 HOH AAA 71 671 655 HOH HOH . K 7 HOH AAA 72 672 663 HOH HOH . K 7 HOH AAA 73 673 676 HOH HOH . K 7 HOH AAA 74 674 616 HOH HOH . K 7 HOH AAA 75 675 606 HOH HOH . K 7 HOH AAA 76 676 643 HOH HOH . K 7 HOH AAA 77 677 619 HOH HOH . K 7 HOH AAA 78 678 679 HOH HOH . K 7 HOH AAA 79 679 656 HOH HOH . K 7 HOH AAA 80 680 620 HOH HOH . K 7 HOH AAA 81 681 605 HOH HOH . K 7 HOH AAA 82 682 673 HOH HOH . K 7 HOH AAA 83 683 686 HOH HOH . K 7 HOH AAA 84 684 662 HOH HOH . K 7 HOH AAA 85 685 632 HOH HOH . K 7 HOH AAA 86 686 617 HOH HOH . K 7 HOH AAA 87 687 690 HOH HOH . K 7 HOH AAA 88 688 625 HOH HOH . K 7 HOH AAA 89 689 615 HOH HOH . K 7 HOH AAA 90 690 688 HOH HOH . K 7 HOH AAA 91 691 623 HOH HOH . K 7 HOH AAA 92 692 658 HOH HOH . K 7 HOH AAA 93 693 624 HOH HOH . K 7 HOH AAA 94 694 614 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MG _atom_site.label_atom_id MG _atom_site.label_comp_id MG _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id E _atom_site.label_entity_id 3 _atom_site.Cartn_x 22.52 _atom_site.Cartn_y 30.911 _atom_site.Cartn_z 0.695 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 36.38 _atom_site.pdbx_formal_charge 0 _atom_site.auth_atom_id MG _atom_site.auth_comp_id MG _atom_site.auth_seq_id 504 _atom_site.auth_asym_id AAA _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 278 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 1 #