data_6ZJV # _model_server_result.job_id XP3c-Y9TdPm_2Jyfzpzk9g _model_server_result.datetime_utc '2024-11-24 03:50:04' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6zjv # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":1101}' # _entry.id 6ZJV # _exptl.entry_id 6ZJV _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 102.046 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MALONATE ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 6ZJV _cell.length_a 139.451 _cell.length_b 139.451 _cell.length_c 127.877 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6ZJV _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 31 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 4_555 y,x,-z -0.5 0.866025 0 0.866025 0.5 0 0 0 -1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C3 H2 O4 -2' _chem_comp.formula_weight 102.046 _chem_comp.id MLI _chem_comp.mon_nstd_flag . _chem_comp.name 'MALONATE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 MLI sing 237 n n C1 C3 MLI sing 238 n n C1 H11 MLI sing 239 n n C1 H12 MLI sing 240 n n C2 O6 MLI doub 241 n n C2 O7 MLI sing 242 n n C3 O8 MLI doub 243 n n C3 O9 MLI sing 244 n n # _atom_sites.entry_id 6ZJV _atom_sites.fract_transf_matrix[1][1] 0.007171 _atom_sites.fract_transf_matrix[1][2] 0.00414 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.00828 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00782 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MLI A 1 1101 1 MLI MLI . C 3 HOH A 1 1201 67 HOH HOH . C 3 HOH A 2 1202 133 HOH HOH . C 3 HOH A 3 1203 26 HOH HOH . C 3 HOH A 4 1204 51 HOH HOH . C 3 HOH A 5 1205 101 HOH HOH . C 3 HOH A 6 1206 142 HOH HOH . C 3 HOH A 7 1207 50 HOH HOH . C 3 HOH A 8 1208 109 HOH HOH . C 3 HOH A 9 1209 9 HOH HOH . C 3 HOH A 10 1210 18 HOH HOH . C 3 HOH A 11 1211 92 HOH HOH . C 3 HOH A 12 1212 11 HOH HOH . C 3 HOH A 13 1213 71 HOH HOH . C 3 HOH A 14 1214 20 HOH HOH . C 3 HOH A 15 1215 107 HOH HOH . C 3 HOH A 16 1216 15 HOH HOH . C 3 HOH A 17 1217 32 HOH HOH . C 3 HOH A 18 1218 33 HOH HOH . C 3 HOH A 19 1219 30 HOH HOH . C 3 HOH A 20 1220 59 HOH HOH . C 3 HOH A 21 1221 13 HOH HOH . C 3 HOH A 22 1222 81 HOH HOH . C 3 HOH A 23 1223 12 HOH HOH . C 3 HOH A 24 1224 60 HOH HOH . C 3 HOH A 25 1225 19 HOH HOH . C 3 HOH A 26 1226 65 HOH HOH . C 3 HOH A 27 1227 137 HOH HOH . C 3 HOH A 28 1228 88 HOH HOH . C 3 HOH A 29 1229 75 HOH HOH . C 3 HOH A 30 1230 21 HOH HOH . C 3 HOH A 31 1231 16 HOH HOH . C 3 HOH A 32 1232 14 HOH HOH . C 3 HOH A 33 1233 25 HOH HOH . C 3 HOH A 34 1234 84 HOH HOH . C 3 HOH A 35 1235 41 HOH HOH . C 3 HOH A 36 1236 121 HOH HOH . C 3 HOH A 37 1237 39 HOH HOH . C 3 HOH A 38 1238 23 HOH HOH . C 3 HOH A 39 1239 5 HOH HOH . C 3 HOH A 40 1240 106 HOH HOH . C 3 HOH A 41 1241 17 HOH HOH . C 3 HOH A 42 1242 93 HOH HOH . C 3 HOH A 43 1243 7 HOH HOH . C 3 HOH A 44 1244 120 HOH HOH . C 3 HOH A 45 1245 47 HOH HOH . C 3 HOH A 46 1246 1 HOH HOH . C 3 HOH A 47 1247 54 HOH HOH . C 3 HOH A 48 1248 8 HOH HOH . C 3 HOH A 49 1249 27 HOH HOH . C 3 HOH A 50 1250 100 HOH HOH . C 3 HOH A 51 1251 58 HOH HOH . C 3 HOH A 52 1252 143 HOH HOH . C 3 HOH A 53 1253 37 HOH HOH . C 3 HOH A 54 1254 42 HOH HOH . C 3 HOH A 55 1255 22 HOH HOH . C 3 HOH A 56 1256 104 HOH HOH . C 3 HOH A 57 1257 69 HOH HOH . C 3 HOH A 58 1258 52 HOH HOH . C 3 HOH A 59 1259 114 HOH HOH . C 3 HOH A 60 1260 103 HOH HOH . C 3 HOH A 61 1261 35 HOH HOH . C 3 HOH A 62 1262 43 HOH HOH . C 3 HOH A 63 1263 53 HOH HOH . C 3 HOH A 64 1264 3 HOH HOH . C 3 HOH A 65 1265 87 HOH HOH . C 3 HOH A 66 1266 10 HOH HOH . C 3 HOH A 67 1267 61 HOH HOH . C 3 HOH A 68 1268 73 HOH HOH . C 3 HOH A 69 1269 131 HOH HOH . C 3 HOH A 70 1270 44 HOH HOH . C 3 HOH A 71 1271 78 HOH HOH . C 3 HOH A 72 1272 85 HOH HOH . C 3 HOH A 73 1273 45 HOH HOH . C 3 HOH A 74 1274 24 HOH HOH . C 3 HOH A 75 1275 94 HOH HOH . C 3 HOH A 76 1276 144 HOH HOH . C 3 HOH A 77 1277 64 HOH HOH . C 3 HOH A 78 1278 77 HOH HOH . C 3 HOH A 79 1279 96 HOH HOH . C 3 HOH A 80 1280 118 HOH HOH . C 3 HOH A 81 1281 110 HOH HOH . C 3 HOH A 82 1282 57 HOH HOH . C 3 HOH A 83 1283 4 HOH HOH . C 3 HOH A 84 1284 49 HOH HOH . C 3 HOH A 85 1285 28 HOH HOH . C 3 HOH A 86 1286 72 HOH HOH . C 3 HOH A 87 1287 40 HOH HOH . C 3 HOH A 88 1288 79 HOH HOH . C 3 HOH A 89 1289 102 HOH HOH . C 3 HOH A 90 1290 76 HOH HOH . C 3 HOH A 91 1291 136 HOH HOH . C 3 HOH A 92 1292 97 HOH HOH . C 3 HOH A 93 1293 122 HOH HOH . C 3 HOH A 94 1294 6 HOH HOH . C 3 HOH A 95 1295 36 HOH HOH . C 3 HOH A 96 1296 68 HOH HOH . C 3 HOH A 97 1297 108 HOH HOH . C 3 HOH A 98 1298 119 HOH HOH . C 3 HOH A 99 1299 2 HOH HOH . C 3 HOH A 100 1300 29 HOH HOH . C 3 HOH A 101 1301 89 HOH HOH . C 3 HOH A 102 1302 112 HOH HOH . C 3 HOH A 103 1303 113 HOH HOH . C 3 HOH A 104 1304 91 HOH HOH . C 3 HOH A 105 1305 48 HOH HOH . C 3 HOH A 106 1306 111 HOH HOH . C 3 HOH A 107 1307 83 HOH HOH . C 3 HOH A 108 1308 34 HOH HOH . C 3 HOH A 109 1309 38 HOH HOH . C 3 HOH A 110 1310 46 HOH HOH . C 3 HOH A 111 1311 128 HOH HOH . C 3 HOH A 112 1312 90 HOH HOH . C 3 HOH A 113 1313 126 HOH HOH . C 3 HOH A 114 1314 70 HOH HOH . C 3 HOH A 115 1315 115 HOH HOH . C 3 HOH A 116 1316 62 HOH HOH . C 3 HOH A 117 1317 129 HOH HOH . C 3 HOH A 118 1318 132 HOH HOH . C 3 HOH A 119 1319 135 HOH HOH . C 3 HOH A 120 1320 86 HOH HOH . C 3 HOH A 121 1321 141 HOH HOH . C 3 HOH A 122 1322 99 HOH HOH . C 3 HOH A 123 1323 130 HOH HOH . C 3 HOH A 124 1324 55 HOH HOH . C 3 HOH A 125 1325 125 HOH HOH . C 3 HOH A 126 1326 124 HOH HOH . C 3 HOH A 127 1327 116 HOH HOH . C 3 HOH A 128 1328 138 HOH HOH . C 3 HOH A 129 1329 66 HOH HOH . C 3 HOH A 130 1330 56 HOH HOH . C 3 HOH A 131 1331 139 HOH HOH . C 3 HOH A 132 1332 95 HOH HOH . C 3 HOH A 133 1333 80 HOH HOH . C 3 HOH A 134 1334 117 HOH HOH . C 3 HOH A 135 1335 82 HOH HOH . C 3 HOH A 136 1336 105 HOH HOH . C 3 HOH A 137 1337 98 HOH HOH . C 3 HOH A 138 1338 63 HOH HOH . C 3 HOH A 139 1339 134 HOH HOH . C 3 HOH A 140 1340 140 HOH HOH . C 3 HOH A 141 1341 127 HOH HOH . C 3 HOH A 142 1342 123 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 MLI . . . B 2 34.391 40.31 49.815 1 88.31 ? C1 MLI 1101 A 1 HETATM 2 C C2 MLI . . . B 2 35.173 39.057 49.409 1 87.38 ? C2 MLI 1101 A 1 HETATM 3 C C3 MLI . . . B 2 33.383 39.969 50.913 1 88.29 ? C3 MLI 1101 A 1 HETATM 4 O O6 MLI . . . B 2 34.569 38.065 48.917 1 86.9 ? O6 MLI 1101 A 1 HETATM 5 O O7 MLI . . . B 2 36.422 39.006 49.576 1 86.77 ? O7 MLI 1101 A 1 HETATM 6 O O8 MLI . . . B 2 32.233 40.49 50.899 1 87.91 ? O8 MLI 1101 A 1 HETATM 7 O O9 MLI . . . B 2 33.711 39.171 51.828 1 88.1 ? O9 MLI 1101 A 1 # _model_server_stats.io_time_ms 76 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 287 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 7 #