data_6ZK6 # _model_server_result.job_id IkhQ2XDIuNYw6Lg8svm5Gw _model_server_result.datetime_utc '2024-11-23 05:19:12' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6zk6 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":401}' # _entry.id 6ZK6 # _exptl.entry_id 6ZK6 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 54.938 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MANGANESE (II) ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6ZK6 _cell.length_a 38.546 _cell.length_b 68.749 _cell.length_c 127.846 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6ZK6 _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall 'P 2 2ab (z,x,y)' _symmetry.space_group_name_H-M 'P 2 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C GLU 127 A GLU 126 1_555 A N CSD 128 A CSD 127 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale2 A C CSD 128 A CSD 127 1_555 A N ALA 129 A ALA 128 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale3 A C TYR 273 A TYR 272 1_555 A N CSO 274 A CSO 273 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.344 ? covale ? covale4 A C CSO 274 A CSO 273 1_555 A N GLY 275 A GLY 274 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? metalc ? metalc1 A OD2 ASP 65 A ASP 64 1_555 C MN MN . A MN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.015 ? metalc ? metalc2 A OD2 ASP 65 A ASP 64 1_555 E FE FE . A FE 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.124 ? metalc ? metalc3 A NE2 HIS 67 A HIS 66 1_555 C MN MN . A MN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.368 ? metalc ? metalc4 A NE2 HIS 67 A HIS 66 1_555 E FE FE . A FE 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.053 ? metalc ? metalc5 A OD2 ASP 93 A ASP 92 1_555 B MN MN . A MN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.259 ? metalc ? metalc6 A OD2 ASP 93 A ASP 92 1_555 C MN MN . A MN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.968 ? metalc ? metalc7 A OD2 ASP 93 A ASP 92 1_555 D FE FE . A FE 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.302 ? metalc ? metalc8 A OD2 ASP 93 A ASP 92 1_555 E FE FE . A FE 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.554 ? metalc ? metalc9 A OD1 ASN 125 A ASN 124 1_555 B MN MN . A MN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.469 ? metalc ? metalc10 A OD1 ASN 125 A ASN 124 1_555 D FE FE . A FE 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.946 ? metalc ? metalc11 A NE2 HIS 174 A HIS 173 1_555 B MN MN . A MN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.285 ? metalc ? metalc12 A NE2 HIS 174 A HIS 173 1_555 D FE FE . A FE 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.07 ? metalc ? metalc13 A ND1 HIS 249 A HIS 248 1_555 B MN MN . A MN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.192 ? metalc ? metalc14 A ND1 HIS 249 A HIS 248 1_555 D FE FE . A FE 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.228 ? metalc ? metalc15 B MN MN . A MN 401 1_555 F O3 PO4 . A PO4 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.066 ? metalc ? metalc16 B MN MN . A MN 401 1_555 G O HOH . A HOH 542 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.809 ? metalc ? metalc17 C MN MN . A MN 402 1_555 F O1 PO4 . A PO4 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.166 ? metalc ? metalc18 C MN MN . A MN 402 1_555 G O HOH . A HOH 542 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.906 ? metalc ? metalc19 C MN MN . A MN 402 1_555 G O HOH . A HOH 550 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.58 ? metalc ? metalc20 D FE FE . A FE 403 1_555 F O3 PO4 . A PO4 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.154 ? metalc ? metalc21 D FE FE . A FE 403 1_555 G O HOH . A HOH 542 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.353 ? metalc ? metalc22 E FE FE . A FE 404 1_555 F O1 PO4 . A PO4 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.005 ? metalc ? metalc23 E FE FE . A FE 404 1_555 G O HOH . A HOH 542 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.237 ? metalc ? metalc24 E FE FE . A FE 404 1_555 G O HOH . A HOH 550 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.997 ? # _chem_comp.formula 'Mn 2' _chem_comp.formula_weight 54.938 _chem_comp.id MN _chem_comp.mon_nstd_flag . _chem_comp.name 'MANGANESE (II) ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 6ZK6 _atom_sites.fract_transf_matrix[1][1] 0.025943 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014546 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007822 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MN A 1 401 1 MN MN . C 2 MN A 1 402 2 MN MN . D 3 FE A 1 403 1 FE FE . E 3 FE A 1 404 2 FE FE . F 4 PO4 A 1 405 1 PO4 PO4 . G 5 HOH A 1 501 99 HOH HOH . G 5 HOH A 2 502 109 HOH HOH . G 5 HOH A 3 503 105 HOH HOH . G 5 HOH A 4 504 22 HOH HOH . G 5 HOH A 5 505 75 HOH HOH . G 5 HOH A 6 506 49 HOH HOH . G 5 HOH A 7 507 33 HOH HOH . G 5 HOH A 8 508 68 HOH HOH . G 5 HOH A 9 509 65 HOH HOH . G 5 HOH A 10 510 61 HOH HOH . G 5 HOH A 11 511 23 HOH HOH . G 5 HOH A 12 512 46 HOH HOH . G 5 HOH A 13 513 88 HOH HOH . G 5 HOH A 14 514 67 HOH HOH . G 5 HOH A 15 515 84 HOH HOH . G 5 HOH A 16 516 30 HOH HOH . G 5 HOH A 17 517 103 HOH HOH . G 5 HOH A 18 518 2 HOH HOH . G 5 HOH A 19 519 72 HOH HOH . G 5 HOH A 20 520 104 HOH HOH . G 5 HOH A 21 521 80 HOH HOH . G 5 HOH A 22 522 25 HOH HOH . G 5 HOH A 23 523 107 HOH HOH . G 5 HOH A 24 524 35 HOH HOH . G 5 HOH A 25 525 74 HOH HOH . G 5 HOH A 26 526 60 HOH HOH . G 5 HOH A 27 527 5 HOH HOH . G 5 HOH A 28 528 16 HOH HOH . G 5 HOH A 29 529 95 HOH HOH . G 5 HOH A 30 530 128 HOH HOH . G 5 HOH A 31 531 97 HOH HOH . G 5 HOH A 32 532 38 HOH HOH . G 5 HOH A 33 533 18 HOH HOH . G 5 HOH A 34 534 14 HOH HOH . G 5 HOH A 35 535 17 HOH HOH . G 5 HOH A 36 536 64 HOH HOH . G 5 HOH A 37 537 31 HOH HOH . G 5 HOH A 38 538 63 HOH HOH . G 5 HOH A 39 539 70 HOH HOH . G 5 HOH A 40 540 10 HOH HOH . G 5 HOH A 41 541 51 HOH HOH . G 5 HOH A 42 542 124 HOH HOH . G 5 HOH A 43 543 28 HOH HOH . G 5 HOH A 44 544 81 HOH HOH . G 5 HOH A 45 545 50 HOH HOH . G 5 HOH A 46 546 106 HOH HOH . G 5 HOH A 47 547 52 HOH HOH . G 5 HOH A 48 548 37 HOH HOH . G 5 HOH A 49 549 34 HOH HOH . G 5 HOH A 50 550 7 HOH HOH . G 5 HOH A 51 551 90 HOH HOH . G 5 HOH A 52 552 36 HOH HOH . G 5 HOH A 53 553 86 HOH HOH . G 5 HOH A 54 554 59 HOH HOH . G 5 HOH A 55 555 45 HOH HOH . G 5 HOH A 56 556 42 HOH HOH . G 5 HOH A 57 557 92 HOH HOH . G 5 HOH A 58 558 15 HOH HOH . G 5 HOH A 59 559 27 HOH HOH . G 5 HOH A 60 560 55 HOH HOH . G 5 HOH A 61 561 41 HOH HOH . G 5 HOH A 62 562 44 HOH HOH . G 5 HOH A 63 563 9 HOH HOH . G 5 HOH A 64 564 6 HOH HOH . G 5 HOH A 65 565 76 HOH HOH . G 5 HOH A 66 566 47 HOH HOH . G 5 HOH A 67 567 13 HOH HOH . G 5 HOH A 68 568 54 HOH HOH . G 5 HOH A 69 569 101 HOH HOH . G 5 HOH A 70 570 29 HOH HOH . G 5 HOH A 71 571 85 HOH HOH . G 5 HOH A 72 572 116 HOH HOH . G 5 HOH A 73 573 100 HOH HOH . G 5 HOH A 74 574 126 HOH HOH . G 5 HOH A 75 575 39 HOH HOH . G 5 HOH A 76 576 62 HOH HOH . G 5 HOH A 77 577 58 HOH HOH . G 5 HOH A 78 578 26 HOH HOH . G 5 HOH A 79 579 119 HOH HOH . G 5 HOH A 80 580 40 HOH HOH . G 5 HOH A 81 581 71 HOH HOH . G 5 HOH A 82 582 115 HOH HOH . G 5 HOH A 83 583 8 HOH HOH . G 5 HOH A 84 584 69 HOH HOH . G 5 HOH A 85 585 24 HOH HOH . G 5 HOH A 86 586 112 HOH HOH . G 5 HOH A 87 587 12 HOH HOH . G 5 HOH A 88 588 102 HOH HOH . G 5 HOH A 89 589 48 HOH HOH . G 5 HOH A 90 590 56 HOH HOH . G 5 HOH A 91 591 94 HOH HOH . G 5 HOH A 92 592 20 HOH HOH . G 5 HOH A 93 593 87 HOH HOH . G 5 HOH A 94 594 130 HOH HOH . G 5 HOH A 95 595 32 HOH HOH . G 5 HOH A 96 596 123 HOH HOH . G 5 HOH A 97 597 127 HOH HOH . G 5 HOH A 98 598 91 HOH HOH . G 5 HOH A 99 599 4 HOH HOH . G 5 HOH A 100 600 82 HOH HOH . G 5 HOH A 101 601 57 HOH HOH . G 5 HOH A 102 602 1 HOH HOH . G 5 HOH A 103 603 19 HOH HOH . G 5 HOH A 104 604 3 HOH HOH . G 5 HOH A 105 605 11 HOH HOH . G 5 HOH A 106 606 129 HOH HOH . G 5 HOH A 107 607 125 HOH HOH . G 5 HOH A 108 608 122 HOH HOH . G 5 HOH A 109 609 98 HOH HOH . G 5 HOH A 110 610 73 HOH HOH . G 5 HOH A 111 611 96 HOH HOH . G 5 HOH A 112 612 121 HOH HOH . G 5 HOH A 113 613 93 HOH HOH . G 5 HOH A 114 614 110 HOH HOH . G 5 HOH A 115 615 120 HOH HOH . G 5 HOH A 116 616 118 HOH HOH . G 5 HOH A 117 617 111 HOH HOH . G 5 HOH A 118 618 108 HOH HOH . G 5 HOH A 119 619 77 HOH HOH . G 5 HOH A 120 620 89 HOH HOH . G 5 HOH A 121 621 53 HOH HOH . G 5 HOH A 122 622 21 HOH HOH . G 5 HOH A 123 623 43 HOH HOH . G 5 HOH A 124 624 83 HOH HOH . G 5 HOH A 125 625 117 HOH HOH . G 5 HOH A 126 626 78 HOH HOH . G 5 HOH A 127 627 113 HOH HOH . G 5 HOH A 128 628 114 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MN _atom_site.label_atom_id MN _atom_site.label_comp_id MN _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id B _atom_site.label_entity_id 2 _atom_site.Cartn_x 79.772 _atom_site.Cartn_y 89.078 _atom_site.Cartn_z 25.074 _atom_site.occupancy 0.5 _atom_site.B_iso_or_equiv 26.75 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id MN _atom_site.auth_comp_id MN _atom_site.auth_seq_id 401 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 78 _model_server_stats.parse_time_ms 23 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 315 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 1 #