data_6ZK7 # _model_server_result.job_id I2kUbU6zvc0Okechw9G1eQ _model_server_result.datetime_utc '2024-10-10 11:18:52' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6zk7 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":601}' # _entry.id 6ZK7 # _exptl.entry_id 6ZK7 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 785.55 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'FLAVIN-ADENINE DINUCLEOTIDE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 6ZK7 _cell.length_a 101.23 _cell.length_b 101.23 _cell.length_c 143.45 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6ZK7 _symmetry.cell_setting ? _symmetry.Int_Tables_number 151 _symmetry.space_group_name_Hall 'P 31 2 (x,y,z+1/3)' _symmetry.space_group_name_H-M 'P 31 1 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C THR 76 AAAA THR 71 1_555 A N MSE 77 AAAA MSE 72 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale2 A C MSE 77 AAAA MSE 72 1_555 A N LEU 78 AAAA LEU 73 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? covale ? covale3 A C ILE 155 AAAA ILE 150 1_555 A N MSE 156 AAAA MSE 151 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale4 A C MSE 156 AAAA MSE 151 1_555 A N ILE 157 AAAA ILE 152 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale5 A C THR 264 AAAA THR 259 1_555 A N MSE 265 AAAA MSE 260 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale6 A C MSE 265 AAAA MSE 260 1_555 A N CYS 266 AAAA CYS 261 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale7 A C GLU 299 AAAA GLU 294 1_555 A N MSE 300 AAAA MSE 295 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale8 A C MSE 300 AAAA MSE 295 1_555 A N TRP 301 AAAA TRP 296 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale9 A C HIS 350 AAAA HIS 345 1_555 A N MSE 351 AAAA MSE 346 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale10 A C MSE 351 AAAA MSE 346 1_555 A N HIS 352 AAAA HIS 347 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale11 A C GLN 377 AAAA GLN 372 1_555 A N MSE 378 AAAA MSE 373 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale12 A C MSE 378 AAAA MSE 373 1_555 A N ARG 379 AAAA ARG 374 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? covale ? covale13 A C GLN 386 AAAA GLN 381 1_555 A N MSE 387 AAAA MSE 382 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale14 A C MSE 387 AAAA MSE 382 1_555 A N GLY 388 AAAA GLY 383 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.336 ? covale ? covale15 A C CYS 394 AAAA CYS 389 1_555 A N MSE 395 AAAA MSE 390 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale16 A C MSE 395 AAAA MSE 390 1_555 A N ALA 396 AAAA ALA 391 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.336 ? covale ? covale17 A C ASP 405 AAAA ASP 400 1_555 A N MSE 406 AAAA MSE 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.337 ? covale ? covale18 A C MSE 406 AAAA MSE 401 1_555 A N ASP 407 AAAA ASP 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale19 A C LEU 441 AAAA LEU 436 1_555 A N MSE 442 AAAA MSE 437 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? covale ? covale20 A C MSE 442 AAAA MSE 437 1_555 A N LEU 443 AAAA LEU 438 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale21 A C VAL 455 AAAA VAL 450 1_555 A N MSE 456 AAAA MSE 451 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale22 A C MSE 456 AAAA MSE 451 1_555 A N GLN 457 AAAA GLN 452 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale23 A C ARG 460 AAAA ARG 455 1_555 A N MSE 461 AAAA MSE 456 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? covale ? covale24 A C MSE 461 AAAA MSE 456 1_555 A N MSE 462 AAAA MSE 457 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale25 A C MSE 462 AAAA MSE 457 1_555 A N GLY 463 AAAA GLY 458 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale26 A C GLN 483 AAAA GLN 478 1_555 A N MSE 484 AAAA MSE 479 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale27 A C MSE 484 AAAA MSE 479 1_555 A N ASN 485 AAAA ASN 480 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? # _chem_comp.formula 'C27 H33 N9 O15 P2' _chem_comp.formula_weight 785.55 _chem_comp.id FAD _chem_comp.mon_nstd_flag . _chem_comp.name 'FLAVIN-ADENINE DINUCLEOTIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A FAD doub 83 n n PA O2A FAD sing 84 n n PA O5B FAD sing 85 n n PA O3P FAD sing 86 n n O2A HOA2 FAD sing 87 n n O5B C5B FAD sing 88 n n C5B C4B FAD sing 89 n n C5B H51A FAD sing 90 n n C5B H52A FAD sing 91 n n C4B O4B FAD sing 92 n n C4B C3B FAD sing 93 n n C4B H4B FAD sing 94 n n O4B C1B FAD sing 95 n n C3B O3B FAD sing 96 n n C3B C2B FAD sing 97 n n C3B H3B FAD sing 98 n n O3B HO3A FAD sing 99 n n C2B O2B FAD sing 100 n n C2B C1B FAD sing 101 n n C2B H2B FAD sing 102 n n O2B HO2A FAD sing 103 n n C1B N9A FAD sing 104 n n C1B H1B FAD sing 105 n n N9A C8A FAD sing 106 n y N9A C4A FAD sing 107 n y C8A N7A FAD doub 108 n y C8A H8A FAD sing 109 n n N7A C5A FAD sing 110 n y C5A C6A FAD sing 111 n y C5A C4A FAD doub 112 n y C6A N6A FAD sing 113 n n C6A N1A FAD doub 114 n y N6A H61A FAD sing 115 n n N6A H62A FAD sing 116 n n N1A C2A FAD sing 117 n y C2A N3A FAD doub 118 n y C2A H2A FAD sing 119 n n N3A C4A FAD sing 120 n y N1 C2 FAD sing 121 n n N1 C10 FAD doub 122 n n C2 O2 FAD doub 123 n n C2 N3 FAD sing 124 n n N3 C4 FAD sing 125 n n N3 HN3 FAD sing 126 n n C4 O4 FAD doub 127 n n C4 C4X FAD sing 128 n n C4X N5 FAD doub 129 n n C4X C10 FAD sing 130 n n N5 C5X FAD sing 131 n n C5X C6 FAD doub 132 n y C5X C9A FAD sing 133 n y C6 C7 FAD sing 134 n y C6 H6 FAD sing 135 n n C7 C7M FAD sing 136 n n C7 C8 FAD doub 137 n y C7M HM71 FAD sing 138 n n C7M HM72 FAD sing 139 n n C7M HM73 FAD sing 140 n n C8 C8M FAD sing 141 n n C8 C9 FAD sing 142 n y C8M HM81 FAD sing 143 n n C8M HM82 FAD sing 144 n n C8M HM83 FAD sing 145 n n C9 C9A FAD doub 146 n y C9 H9 FAD sing 147 n n C9A N10 FAD sing 148 n n N10 C10 FAD sing 149 n n N10 C1' FAD sing 150 n n C1' C2' FAD sing 151 n n C1' "H1'1" FAD sing 152 n n C1' "H1'2" FAD sing 153 n n C2' O2' FAD sing 154 n n C2' C3' FAD sing 155 n n C2' H2' FAD sing 156 n n O2' HO2' FAD sing 157 n n C3' O3' FAD sing 158 n n C3' C4' FAD sing 159 n n C3' H3' FAD sing 160 n n O3' HO3' FAD sing 161 n n C4' O4' FAD sing 162 n n C4' C5' FAD sing 163 n n C4' H4' FAD sing 164 n n O4' HO4' FAD sing 165 n n C5' O5' FAD sing 166 n n C5' "H5'1" FAD sing 167 n n C5' "H5'2" FAD sing 168 n n O5' P FAD sing 169 n n P O1P FAD doub 170 n n P O2P FAD sing 171 n n P O3P FAD sing 172 n n O2P HOP2 FAD sing 173 n n # _atom_sites.entry_id 6ZK7 _atom_sites.fract_transf_matrix[1][1] 0.009878 _atom_sites.fract_transf_matrix[1][2] 0.005703 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011407 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006971 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # _pdbx_nonpoly_scheme.asym_id B _pdbx_nonpoly_scheme.entity_id 2 _pdbx_nonpoly_scheme.mon_id FAD _pdbx_nonpoly_scheme.pdb_strand_id AAAA _pdbx_nonpoly_scheme.ndb_seq_num 1 _pdbx_nonpoly_scheme.pdb_seq_num 601 _pdbx_nonpoly_scheme.auth_seq_num 502 _pdbx_nonpoly_scheme.pdb_mon_id FAD _pdbx_nonpoly_scheme.auth_mon_id FAD _pdbx_nonpoly_scheme.pdb_ins_code . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA FAD . . . B 2 -37.387 -2.154 -7.002 1 100.85 ? PA FAD 601 AAAA 1 HETATM 2 O O1A FAD . . . B 2 -38.762 -1.635 -6.903 1 100.85 ? O1A FAD 601 AAAA 1 HETATM 3 O O2A FAD . . . B 2 -36.959 -3.11 -5.893 1 110.26 ? O2A FAD 601 AAAA 1 HETATM 4 O O5B FAD . . . B 2 -37.152 -2.902 -8.405 1 107.87 ? O5B FAD 601 AAAA 1 HETATM 5 C C5B FAD . . . B 2 -35.906 -3.573 -8.689 1 102.73 ? C5B FAD 601 AAAA 1 HETATM 6 C C4B FAD . . . B 2 -36.029 -4.157 -10.072 1 100.85 ? C4B FAD 601 AAAA 1 HETATM 7 O O4B FAD . . . B 2 -34.917 -5.042 -10.337 1 100.85 ? O4B FAD 601 AAAA 1 HETATM 8 C C3B FAD . . . B 2 -37.308 -4.968 -10.316 1 100.85 ? C3B FAD 601 AAAA 1 HETATM 9 O O3B FAD . . . B 2 -37.971 -4.532 -11.498 1 100.93 ? O3B FAD 601 AAAA 1 HETATM 10 C C2B FAD . . . B 2 -36.798 -6.409 -10.43 1 100.85 ? C2B FAD 601 AAAA 1 HETATM 11 O O2B FAD . . . B 2 -37.612 -7.189 -11.301 1 102.74 ? O2B FAD 601 AAAA 1 HETATM 12 C C1B FAD . . . B 2 -35.411 -6.177 -11.015 1 100.85 ? C1B FAD 601 AAAA 1 HETATM 13 N N9A FAD . . . B 2 -34.476 -7.281 -10.828 1 100.85 ? N9A FAD 601 AAAA 1 HETATM 14 C C8A FAD . . . B 2 -34.413 -8.147 -9.769 1 100.85 ? C8A FAD 601 AAAA 1 HETATM 15 N N7A FAD . . . B 2 -33.47 -9.051 -9.871 1 104.62 ? N7A FAD 601 AAAA 1 HETATM 16 C C5A FAD . . . B 2 -32.868 -8.761 -11.09 1 104.63 ? C5A FAD 601 AAAA 1 HETATM 17 C C6A FAD . . . B 2 -31.797 -9.353 -11.784 1 103.67 ? C6A FAD 601 AAAA 1 HETATM 18 N N6A FAD . . . B 2 -31.108 -10.406 -11.336 1 113.58 ? N6A FAD 601 AAAA 1 HETATM 19 N N1A FAD . . . B 2 -31.45 -8.817 -12.975 1 100.85 ? N1A FAD 601 AAAA 1 HETATM 20 C C2A FAD . . . B 2 -32.135 -7.764 -13.431 1 100.85 ? C2A FAD 601 AAAA 1 HETATM 21 N N3A FAD . . . B 2 -33.159 -7.123 -12.864 1 103.97 ? N3A FAD 601 AAAA 1 HETATM 22 C C4A FAD . . . B 2 -33.482 -7.672 -11.688 1 104.03 ? C4A FAD 601 AAAA 1 HETATM 23 N N1 FAD . . . B 2 -42.182 2.295 -0.685 1 100.85 ? N1 FAD 601 AAAA 1 HETATM 24 C C2 FAD . . . B 2 -42.805 3.51 -0.665 1 100.85 ? C2 FAD 601 AAAA 1 HETATM 25 O O2 FAD . . . B 2 -42.18 4.563 -0.829 1 104.52 ? O2 FAD 601 AAAA 1 HETATM 26 N N3 FAD . . . B 2 -44.169 3.58 -0.457 1 100.85 ? N3 FAD 601 AAAA 1 HETATM 27 C C4 FAD . . . B 2 -45.017 2.509 -0.258 1 100.85 ? C4 FAD 601 AAAA 1 HETATM 28 O O4 FAD . . . B 2 -46.22 2.696 -0.083 1 109.99 ? O4 FAD 601 AAAA 1 HETATM 29 C C4X FAD . . . B 2 -44.356 1.225 -0.28 1 100.85 ? C4X FAD 601 AAAA 1 HETATM 30 N N5 FAD . . . B 2 -45.08 0.158 -0.1 1 100.85 ? N5 FAD 601 AAAA 1 HETATM 31 C C5X FAD . . . B 2 -44.444 -1.075 -0.121 1 100.85 ? C5X FAD 601 AAAA 1 HETATM 32 C C6 FAD . . . B 2 -45.21 -2.226 0.07 1 103.14 ? C6 FAD 601 AAAA 1 HETATM 33 C C7 FAD . . . B 2 -44.621 -3.486 0.058 1 100.85 ? C7 FAD 601 AAAA 1 HETATM 34 C C7M FAD . . . B 2 -45.479 -4.706 0.268 1 103.06 ? C7M FAD 601 AAAA 1 HETATM 35 C C8 FAD . . . B 2 -43.237 -3.603 -0.149 1 100.85 ? C8 FAD 601 AAAA 1 HETATM 36 C C8M FAD . . . B 2 -42.569 -4.954 -0.167 1 100.85 ? C8M FAD 601 AAAA 1 HETATM 37 C C9 FAD . . . B 2 -42.47 -2.457 -0.334 1 100.85 ? C9 FAD 601 AAAA 1 HETATM 38 C C9A FAD . . . B 2 -43.062 -1.198 -0.328 1 101.29 ? C9A FAD 601 AAAA 1 HETATM 39 N N10 FAD . . . B 2 -42.316 -0.013 -0.52 1 100.91 ? N10 FAD 601 AAAA 1 HETATM 40 C C10 FAD . . . B 2 -42.925 1.218 -0.502 1 100.85 ? C10 FAD 601 AAAA 1 HETATM 41 C C1' FAD . . . B 2 -40.862 -0.064 -0.741 1 100.85 ? C1' FAD 601 AAAA 1 HETATM 42 C C2' FAD . . . B 2 -40.466 -0.639 -2.099 1 108.46 ? C2' FAD 601 AAAA 1 HETATM 43 O O2' FAD . . . B 2 -39.498 -1.673 -1.922 1 122.72 ? O2' FAD 601 AAAA 1 HETATM 44 C C3' FAD . . . B 2 -39.883 0.438 -3.013 1 108.24 ? C3' FAD 601 AAAA 1 HETATM 45 O O3' FAD . . . B 2 -40.309 0.177 -4.346 1 100.85 ? O3' FAD 601 AAAA 1 HETATM 46 C C4' FAD . . . B 2 -38.356 0.495 -2.983 1 110.63 ? C4' FAD 601 AAAA 1 HETATM 47 O O4' FAD . . . B 2 -37.921 1.418 -1.984 1 105.07 ? O4' FAD 601 AAAA 1 HETATM 48 C C5' FAD . . . B 2 -37.754 0.845 -4.328 1 106.84 ? C5' FAD 601 AAAA 1 HETATM 49 O O5' FAD . . . B 2 -36.86 -0.221 -4.715 1 107.78 ? O5' FAD 601 AAAA 1 HETATM 50 P P FAD . . . B 2 -35.716 -0.113 -5.844 1 100.85 ? P FAD 601 AAAA 1 HETATM 51 O O1P FAD . . . B 2 -35.446 1.268 -6.284 1 115.44 ? O1P FAD 601 AAAA 1 HETATM 52 O O2P FAD . . . B 2 -34.505 -0.873 -5.313 1 100.85 ? O2P FAD 601 AAAA 1 HETATM 53 O O3P FAD . . . B 2 -36.323 -0.973 -7.036 1 100.85 ? O3P FAD 601 AAAA 1 # _model_server_stats.io_time_ms 18 _model_server_stats.parse_time_ms 21 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 271 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 53 #