data_6ZKX # _model_server_result.job_id 2oVDwm1b9aZGqcdPfx3dhQ _model_server_result.datetime_utc '2024-11-25 16:50:14' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6zkx # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"J","auth_seq_id":201}' # _entry.id 6ZKX # _exptl.entry_id 6ZKX _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 8 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6ZKX _cell.length_a 71.87 _cell.length_b 107.86 _cell.length_c 119.04 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6ZKX _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details pentameric _pdbx_struct_assembly.oligomeric_count 5 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 6 F N N ? 6 G N N ? 6 H N N ? 6 I N N ? 6 J N N ? 6 K N N ? 6 L N N ? 6 M N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 85 A CYS 84 1_555 C SG CYS 11 C CYS 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? disulf ? disulf2 A SG CYS 102 A CYS 101 1_555 A SG CYS 165 A CYS 164 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? disulf ? disulf3 A SG CYS 204 A CYS 203 1_555 A SG CYS 260 A CYS 259 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.022 ? disulf ? disulf4 B SG CYS 26 B CYS 27 1_555 B SG CYS 81 B CYS 82 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf5 D SG CYS 24 D CYS 23 1_555 D SG CYS 91 D CYS 104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.022 ? disulf ? disulf6 D SG CYS 136 D CYS 151 1_555 D SG CYS 186 D CYS 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? disulf ? disulf7 D SG CYS 161 D CYS 176 1_555 E SG CYS 172 E CYS 184 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.046 ? disulf ? disulf8 E SG CYS 23 E CYS 23 1_555 E SG CYS 91 E CYS 104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.016 ? disulf ? disulf9 E SG CYS 146 E CYS 158 1_555 E SG CYS 211 E CYS 223 1_555 ? ? ? ? A ? ? ? ? ? ? ? 2.017 ? disulf ? disulf10 E SG CYS 146 E CYS 158 1_555 E SG CYS 211 E CYS 223 1_555 ? ? ? ? B ? ? ? ? ? ? ? 2.048 ? # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 83 n n C1 C2 EDO sing 84 n n C1 H11 EDO sing 85 n n C1 H12 EDO sing 86 n n O1 HO1 EDO sing 87 n n C2 O2 EDO sing 88 n n C2 H21 EDO sing 89 n n C2 H22 EDO sing 90 n n O2 HO2 EDO sing 91 n n # _atom_sites.entry_id 6ZKX _atom_sites.fract_transf_matrix[1][1] 0.013914 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009271 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008401 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code F 6 EDO A 1 301 2 EDO EDO . G 6 EDO A 1 302 5 EDO EDO . H 6 EDO A 1 303 8 EDO EDO . I 6 EDO A 1 304 9 EDO EDO . J 6 EDO B 1 201 3 EDO EDO . K 6 EDO B 1 202 4 EDO EDO . L 6 EDO B 1 203 6 EDO EDO . M 6 EDO D 1 301 1 EDO EDO . N 7 HOH A 1 401 283 HOH HOH . N 7 HOH A 2 402 179 HOH HOH . N 7 HOH A 3 403 196 HOH HOH . N 7 HOH A 4 404 82 HOH HOH . N 7 HOH A 5 405 121 HOH HOH . N 7 HOH A 6 406 176 HOH HOH . N 7 HOH A 7 407 267 HOH HOH . N 7 HOH A 8 408 73 HOH HOH . N 7 HOH A 9 409 66 HOH HOH . N 7 HOH A 10 410 58 HOH HOH . N 7 HOH A 11 411 81 HOH HOH . N 7 HOH A 12 412 19 HOH HOH . N 7 HOH A 13 413 275 HOH HOH . N 7 HOH A 14 414 47 HOH HOH . N 7 HOH A 15 415 189 HOH HOH . N 7 HOH A 16 416 104 HOH HOH . N 7 HOH A 17 417 93 HOH HOH . N 7 HOH A 18 418 2 HOH HOH . N 7 HOH A 19 419 154 HOH HOH . N 7 HOH A 20 420 45 HOH HOH . N 7 HOH A 21 421 191 HOH HOH . N 7 HOH A 22 422 187 HOH HOH . N 7 HOH A 23 423 33 HOH HOH . N 7 HOH A 24 424 98 HOH HOH . N 7 HOH A 25 425 118 HOH HOH . N 7 HOH A 26 426 54 HOH HOH . N 7 HOH A 27 427 101 HOH HOH . N 7 HOH A 28 428 75 HOH HOH . N 7 HOH A 29 429 262 HOH HOH . N 7 HOH A 30 430 281 HOH HOH . N 7 HOH A 31 431 222 HOH HOH . N 7 HOH A 32 432 83 HOH HOH . N 7 HOH A 33 433 332 HOH HOH . N 7 HOH A 34 434 30 HOH HOH . N 7 HOH A 35 435 203 HOH HOH . N 7 HOH A 36 436 244 HOH HOH . N 7 HOH A 37 437 190 HOH HOH . N 7 HOH A 38 438 198 HOH HOH . N 7 HOH A 39 439 44 HOH HOH . N 7 HOH A 40 440 309 HOH HOH . N 7 HOH A 41 441 170 HOH HOH . N 7 HOH A 42 442 238 HOH HOH . N 7 HOH A 43 443 28 HOH HOH . N 7 HOH A 44 444 177 HOH HOH . N 7 HOH A 45 445 135 HOH HOH . N 7 HOH A 46 446 202 HOH HOH . N 7 HOH A 47 447 297 HOH HOH . N 7 HOH A 48 448 143 HOH HOH . N 7 HOH A 49 449 188 HOH HOH . N 7 HOH A 50 450 287 HOH HOH . N 7 HOH A 51 451 77 HOH HOH . N 7 HOH A 52 452 180 HOH HOH . N 7 HOH A 53 453 74 HOH HOH . N 7 HOH A 54 454 271 HOH HOH . N 7 HOH A 55 455 26 HOH HOH . N 7 HOH A 56 456 113 HOH HOH . N 7 HOH A 57 457 61 HOH HOH . N 7 HOH A 58 458 252 HOH HOH . N 7 HOH A 59 459 334 HOH HOH . N 7 HOH A 60 460 174 HOH HOH . N 7 HOH A 61 461 310 HOH HOH . N 7 HOH A 62 462 42 HOH HOH . N 7 HOH A 63 463 239 HOH HOH . N 7 HOH A 64 464 24 HOH HOH . N 7 HOH A 65 465 7 HOH HOH . N 7 HOH A 66 466 70 HOH HOH . N 7 HOH A 67 467 200 HOH HOH . N 7 HOH A 68 468 152 HOH HOH . N 7 HOH A 69 469 184 HOH HOH . N 7 HOH A 70 470 60 HOH HOH . N 7 HOH A 71 471 258 HOH HOH . N 7 HOH A 72 472 337 HOH HOH . N 7 HOH A 73 473 240 HOH HOH . N 7 HOH A 74 474 80 HOH HOH . N 7 HOH A 75 475 312 HOH HOH . N 7 HOH A 76 476 62 HOH HOH . N 7 HOH A 77 477 139 HOH HOH . N 7 HOH A 78 478 162 HOH HOH . N 7 HOH A 79 479 40 HOH HOH . N 7 HOH A 80 480 183 HOH HOH . N 7 HOH A 81 481 35 HOH HOH . N 7 HOH A 82 482 46 HOH HOH . N 7 HOH A 83 483 132 HOH HOH . N 7 HOH A 84 484 282 HOH HOH . N 7 HOH A 85 485 221 HOH HOH . N 7 HOH A 86 486 149 HOH HOH . N 7 HOH A 87 487 241 HOH HOH . N 7 HOH A 88 488 330 HOH HOH . N 7 HOH A 89 489 53 HOH HOH . N 7 HOH A 90 490 331 HOH HOH . N 7 HOH A 91 491 181 HOH HOH . N 7 HOH A 92 492 165 HOH HOH . N 7 HOH A 93 493 264 HOH HOH . N 7 HOH A 94 494 317 HOH HOH . N 7 HOH A 95 495 251 HOH HOH . N 7 HOH A 96 496 216 HOH HOH . N 7 HOH A 97 497 293 HOH HOH . N 7 HOH A 98 498 96 HOH HOH . N 7 HOH A 99 499 336 HOH HOH . N 7 HOH A 100 500 254 HOH HOH . N 7 HOH A 101 501 175 HOH HOH . N 7 HOH A 102 502 106 HOH HOH . N 7 HOH A 103 503 122 HOH HOH . O 7 HOH B 1 301 171 HOH HOH . O 7 HOH B 2 302 8 HOH HOH . O 7 HOH B 3 303 285 HOH HOH . O 7 HOH B 4 304 72 HOH HOH . O 7 HOH B 5 305 204 HOH HOH . O 7 HOH B 6 306 105 HOH HOH . O 7 HOH B 7 307 63 HOH HOH . O 7 HOH B 8 308 294 HOH HOH . O 7 HOH B 9 309 270 HOH HOH . O 7 HOH B 10 310 119 HOH HOH . O 7 HOH B 11 311 215 HOH HOH . O 7 HOH B 12 312 103 HOH HOH . O 7 HOH B 13 313 78 HOH HOH . O 7 HOH B 14 314 140 HOH HOH . O 7 HOH B 15 315 32 HOH HOH . O 7 HOH B 16 316 209 HOH HOH . O 7 HOH B 17 317 205 HOH HOH . O 7 HOH B 18 318 64 HOH HOH . O 7 HOH B 19 319 59 HOH HOH . O 7 HOH B 20 320 257 HOH HOH . O 7 HOH B 21 321 291 HOH HOH . O 7 HOH B 22 322 110 HOH HOH . O 7 HOH B 23 323 213 HOH HOH . O 7 HOH B 24 324 182 HOH HOH . O 7 HOH B 25 325 22 HOH HOH . O 7 HOH B 26 326 256 HOH HOH . O 7 HOH B 27 327 206 HOH HOH . O 7 HOH B 28 328 34 HOH HOH . O 7 HOH B 29 329 89 HOH HOH . O 7 HOH B 30 330 319 HOH HOH . O 7 HOH B 31 331 211 HOH HOH . O 7 HOH B 32 332 284 HOH HOH . O 7 HOH B 33 333 49 HOH HOH . O 7 HOH B 34 334 217 HOH HOH . O 7 HOH B 35 335 245 HOH HOH . O 7 HOH B 36 336 208 HOH HOH . O 7 HOH B 37 337 296 HOH HOH . O 7 HOH B 38 338 164 HOH HOH . O 7 HOH B 39 339 276 HOH HOH . O 7 HOH B 40 340 274 HOH HOH . O 7 HOH B 41 341 167 HOH HOH . O 7 HOH B 42 342 214 HOH HOH . P 7 HOH C 1 101 31 HOH HOH . P 7 HOH C 2 102 6 HOH HOH . P 7 HOH C 3 103 120 HOH HOH . P 7 HOH C 4 104 185 HOH HOH . P 7 HOH C 5 105 137 HOH HOH . P 7 HOH C 6 106 329 HOH HOH . Q 7 HOH D 1 401 234 HOH HOH . Q 7 HOH D 2 402 92 HOH HOH . Q 7 HOH D 3 403 36 HOH HOH . Q 7 HOH D 4 404 325 HOH HOH . Q 7 HOH D 5 405 37 HOH HOH . Q 7 HOH D 6 406 17 HOH HOH . Q 7 HOH D 7 407 248 HOH HOH . Q 7 HOH D 8 408 115 HOH HOH . Q 7 HOH D 9 409 236 HOH HOH . Q 7 HOH D 10 410 300 HOH HOH . Q 7 HOH D 11 411 57 HOH HOH . Q 7 HOH D 12 412 338 HOH HOH . Q 7 HOH D 13 413 145 HOH HOH . Q 7 HOH D 14 414 102 HOH HOH . Q 7 HOH D 15 415 4 HOH HOH . Q 7 HOH D 16 416 302 HOH HOH . Q 7 HOH D 17 417 233 HOH HOH . Q 7 HOH D 18 418 307 HOH HOH . Q 7 HOH D 19 419 9 HOH HOH . Q 7 HOH D 20 420 51 HOH HOH . Q 7 HOH D 21 421 186 HOH HOH . Q 7 HOH D 22 422 11 HOH HOH . Q 7 HOH D 23 423 131 HOH HOH . Q 7 HOH D 24 424 95 HOH HOH . Q 7 HOH D 25 425 247 HOH HOH . Q 7 HOH D 26 426 151 HOH HOH . Q 7 HOH D 27 427 250 HOH HOH . Q 7 HOH D 28 428 79 HOH HOH . Q 7 HOH D 29 429 237 HOH HOH . Q 7 HOH D 30 430 273 HOH HOH . Q 7 HOH D 31 431 295 HOH HOH . Q 7 HOH D 32 432 158 HOH HOH . Q 7 HOH D 33 433 94 HOH HOH . Q 7 HOH D 34 434 316 HOH HOH . Q 7 HOH D 35 435 242 HOH HOH . Q 7 HOH D 36 436 27 HOH HOH . Q 7 HOH D 37 437 29 HOH HOH . Q 7 HOH D 38 438 223 HOH HOH . Q 7 HOH D 39 439 69 HOH HOH . Q 7 HOH D 40 440 195 HOH HOH . R 7 HOH E 1 301 192 HOH HOH . R 7 HOH E 2 302 157 HOH HOH . R 7 HOH E 3 303 225 HOH HOH . R 7 HOH E 4 304 265 HOH HOH . R 7 HOH E 5 305 97 HOH HOH . R 7 HOH E 6 306 298 HOH HOH . R 7 HOH E 7 307 249 HOH HOH . R 7 HOH E 8 308 67 HOH HOH . R 7 HOH E 9 309 231 HOH HOH . R 7 HOH E 10 310 90 HOH HOH . R 7 HOH E 11 311 76 HOH HOH . R 7 HOH E 12 312 16 HOH HOH . R 7 HOH E 13 313 84 HOH HOH . R 7 HOH E 14 314 21 HOH HOH . R 7 HOH E 15 315 141 HOH HOH . R 7 HOH E 16 316 65 HOH HOH . R 7 HOH E 17 317 155 HOH HOH . R 7 HOH E 18 318 23 HOH HOH . R 7 HOH E 19 319 159 HOH HOH . R 7 HOH E 20 320 1 HOH HOH . R 7 HOH E 21 321 323 HOH HOH . R 7 HOH E 22 322 150 HOH HOH . R 7 HOH E 23 323 91 HOH HOH . R 7 HOH E 24 324 50 HOH HOH . R 7 HOH E 25 325 3 HOH HOH . R 7 HOH E 26 326 260 HOH HOH . R 7 HOH E 27 327 114 HOH HOH . R 7 HOH E 28 328 108 HOH HOH . R 7 HOH E 29 329 107 HOH HOH . R 7 HOH E 30 330 134 HOH HOH . R 7 HOH E 31 331 71 HOH HOH . R 7 HOH E 32 332 166 HOH HOH . R 7 HOH E 33 333 18 HOH HOH . R 7 HOH E 34 334 306 HOH HOH . R 7 HOH E 35 335 290 HOH HOH . R 7 HOH E 36 336 130 HOH HOH . R 7 HOH E 37 337 138 HOH HOH . R 7 HOH E 38 338 14 HOH HOH . R 7 HOH E 39 339 178 HOH HOH . R 7 HOH E 40 340 193 HOH HOH . R 7 HOH E 41 341 266 HOH HOH . R 7 HOH E 42 342 15 HOH HOH . R 7 HOH E 43 343 226 HOH HOH . R 7 HOH E 44 344 41 HOH HOH . R 7 HOH E 45 345 142 HOH HOH . R 7 HOH E 46 346 10 HOH HOH . R 7 HOH E 47 347 109 HOH HOH . R 7 HOH E 48 348 52 HOH HOH . R 7 HOH E 49 349 224 HOH HOH . R 7 HOH E 50 350 25 HOH HOH . R 7 HOH E 51 351 230 HOH HOH . R 7 HOH E 52 352 112 HOH HOH . R 7 HOH E 53 353 246 HOH HOH . R 7 HOH E 54 354 13 HOH HOH . R 7 HOH E 55 355 314 HOH HOH . R 7 HOH E 56 356 303 HOH HOH . R 7 HOH E 57 357 129 HOH HOH . R 7 HOH E 58 358 232 HOH HOH . R 7 HOH E 59 359 128 HOH HOH . R 7 HOH E 60 360 20 HOH HOH . R 7 HOH E 61 361 320 HOH HOH . R 7 HOH E 62 362 261 HOH HOH . R 7 HOH E 63 363 194 HOH HOH . R 7 HOH E 64 364 326 HOH HOH . R 7 HOH E 65 365 227 HOH HOH . R 7 HOH E 66 366 219 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . J 6 7.863 -67.491 -31.752 1 54.54 ? C1 EDO 201 B 1 HETATM 2 O O1 EDO . . . J 6 7.182 -68.629 -31.27 1 56.55 ? O1 EDO 201 B 1 HETATM 3 C C2 EDO . . . J 6 9.255 -67.399 -31.251 1 54.18 ? C2 EDO 201 B 1 HETATM 4 O O2 EDO . . . J 6 10.034 -66.454 -31.954 1 53.31 ? O2 EDO 201 B 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 296 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 4 #