data_6ZKZ # _model_server_result.job_id dDEPSO_JDmbbfqHFj2Jz4A _model_server_result.datetime_utc '2024-10-19 16:26:08' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6zkz # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":301}' # _entry.id 6ZKZ # _exptl.entry_id 6ZKZ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6ZKZ _cell.length_a 70.81 _cell.length_b 107.89 _cell.length_c 118.42 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6ZKZ _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details pentameric _pdbx_struct_assembly.oligomeric_count 5 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 6 F N N ? 6 G N N ? 6 H N N ? 6 I N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 101 A CYS 101 1_555 A SG CYS 164 A CYS 164 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? disulf ? disulf2 A SG CYS 116 A CYS 116 1_555 C SZ QM8 9 C QM8 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.053 ? disulf ? disulf3 A SG CYS 203 A CYS 203 1_555 A SG CYS 259 A CYS 259 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.012 ? disulf ? disulf4 B SG CYS 26 B CYS 25 1_555 B SG CYS 81 B CYS 80 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.022 ? disulf ? disulf5 D SG CYS 24 D CYS 23 1_555 D SG CYS 91 D CYS 104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.987 ? disulf ? disulf6 D SG CYS 136 D CYS 151 1_555 D SG CYS 186 D CYS 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf7 D SG CYS 161 D CYS 176 1_555 E SG CYS 172 E CYS 184 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.047 ? disulf ? disulf8 E SG CYS 23 E CYS 23 1_555 E SG CYS 91 E CYS 104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.018 ? disulf ? disulf9 E SG CYS 146 E CYS 158 1_555 E SG CYS 211 E CYS 223 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.024 ? covale ? covale1 C C LEU 8 C LEU 8 1_555 C N QM8 9 C QM8 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 83 n n C1 C2 EDO sing 84 n n C1 H11 EDO sing 85 n n C1 H12 EDO sing 86 n n O1 HO1 EDO sing 87 n n C2 O2 EDO sing 88 n n C2 H21 EDO sing 89 n n C2 H22 EDO sing 90 n n O2 HO2 EDO sing 91 n n # _atom_sites.entry_id 6ZKZ _atom_sites.fract_transf_matrix[1][1] 0.014122 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009269 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008445 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code F 6 EDO A 1 301 7 EDO EDO . G 6 EDO B 1 101 1 EDO EDO . H 6 EDO D 1 301 5 EDO EDO . I 6 EDO E 1 301 6 EDO EDO . J 7 HOH A 1 401 11 HOH HOH . J 7 HOH A 2 402 61 HOH HOH . J 7 HOH A 3 403 32 HOH HOH . J 7 HOH A 4 404 71 HOH HOH . J 7 HOH A 5 405 33 HOH HOH . J 7 HOH A 6 406 34 HOH HOH . J 7 HOH A 7 407 66 HOH HOH . J 7 HOH A 8 408 18 HOH HOH . J 7 HOH A 9 409 29 HOH HOH . J 7 HOH A 10 410 8 HOH HOH . J 7 HOH A 11 411 56 HOH HOH . J 7 HOH A 12 412 60 HOH HOH . J 7 HOH A 13 413 62 HOH HOH . J 7 HOH A 14 414 37 HOH HOH . J 7 HOH A 15 415 59 HOH HOH . J 7 HOH A 16 416 30 HOH HOH . J 7 HOH A 17 417 67 HOH HOH . J 7 HOH A 18 418 26 HOH HOH . J 7 HOH A 19 419 89 HOH HOH . J 7 HOH A 20 420 2 HOH HOH . J 7 HOH A 21 421 15 HOH HOH . J 7 HOH A 22 422 14 HOH HOH . J 7 HOH A 23 423 22 HOH HOH . J 7 HOH A 24 424 93 HOH HOH . J 7 HOH A 25 425 74 HOH HOH . J 7 HOH A 26 426 92 HOH HOH . J 7 HOH A 27 427 77 HOH HOH . J 7 HOH A 28 428 94 HOH HOH . J 7 HOH A 29 429 40 HOH HOH . J 7 HOH A 30 430 31 HOH HOH . J 7 HOH A 31 431 76 HOH HOH . J 7 HOH A 32 432 64 HOH HOH . J 7 HOH A 33 433 28 HOH HOH . J 7 HOH A 34 434 24 HOH HOH . J 7 HOH A 35 435 57 HOH HOH . J 7 HOH A 36 436 63 HOH HOH . J 7 HOH A 37 437 65 HOH HOH . J 7 HOH A 38 438 54 HOH HOH . J 7 HOH A 39 439 58 HOH HOH . J 7 HOH A 40 440 91 HOH HOH . K 7 HOH B 1 201 5 HOH HOH . K 7 HOH B 2 202 90 HOH HOH . K 7 HOH B 3 203 55 HOH HOH . K 7 HOH B 4 204 16 HOH HOH . K 7 HOH B 5 205 7 HOH HOH . K 7 HOH B 6 206 23 HOH HOH . K 7 HOH B 7 207 69 HOH HOH . K 7 HOH B 8 208 53 HOH HOH . K 7 HOH B 9 209 52 HOH HOH . K 7 HOH B 10 210 68 HOH HOH . L 7 HOH C 1 101 27 HOH HOH . M 7 HOH D 1 401 80 HOH HOH . M 7 HOH D 2 402 35 HOH HOH . M 7 HOH D 3 403 4 HOH HOH . M 7 HOH D 4 404 38 HOH HOH . M 7 HOH D 5 405 88 HOH HOH . M 7 HOH D 6 406 98 HOH HOH . M 7 HOH D 7 407 21 HOH HOH . M 7 HOH D 8 408 9 HOH HOH . M 7 HOH D 9 409 36 HOH HOH . M 7 HOH D 10 410 87 HOH HOH . M 7 HOH D 11 411 13 HOH HOH . M 7 HOH D 12 412 25 HOH HOH . M 7 HOH D 13 413 85 HOH HOH . M 7 HOH D 14 414 75 HOH HOH . M 7 HOH D 15 415 43 HOH HOH . N 7 HOH E 1 401 46 HOH HOH . N 7 HOH E 2 402 42 HOH HOH . N 7 HOH E 3 403 82 HOH HOH . N 7 HOH E 4 404 47 HOH HOH . N 7 HOH E 5 405 45 HOH HOH . N 7 HOH E 6 406 20 HOH HOH . N 7 HOH E 7 407 10 HOH HOH . N 7 HOH E 8 408 73 HOH HOH . N 7 HOH E 9 409 51 HOH HOH . N 7 HOH E 10 410 86 HOH HOH . N 7 HOH E 11 411 41 HOH HOH . N 7 HOH E 12 412 72 HOH HOH . N 7 HOH E 13 413 17 HOH HOH . N 7 HOH E 14 414 99 HOH HOH . N 7 HOH E 15 415 50 HOH HOH . N 7 HOH E 16 416 97 HOH HOH . N 7 HOH E 17 417 84 HOH HOH . N 7 HOH E 18 418 19 HOH HOH . N 7 HOH E 19 419 95 HOH HOH . N 7 HOH E 20 420 70 HOH HOH . N 7 HOH E 21 421 3 HOH HOH . N 7 HOH E 22 422 1 HOH HOH . N 7 HOH E 23 423 12 HOH HOH . N 7 HOH E 24 424 39 HOH HOH . N 7 HOH E 25 425 6 HOH HOH . N 7 HOH E 26 426 83 HOH HOH . N 7 HOH E 27 427 79 HOH HOH . N 7 HOH E 28 428 78 HOH HOH . N 7 HOH E 29 429 44 HOH HOH . N 7 HOH E 30 430 96 HOH HOH . N 7 HOH E 31 431 48 HOH HOH . N 7 HOH E 32 432 49 HOH HOH . N 7 HOH E 33 433 81 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . I 6 -14.005 -52.902 3.168 1 73.03 ? C1 EDO 301 E 1 HETATM 2 O O1 EDO . . . I 6 -13.083 -52.662 4.213 1 72.75 ? O1 EDO 301 E 1 HETATM 3 C C2 EDO . . . I 6 -14.849 -51.72 2.867 1 73.02 ? C2 EDO 301 E 1 HETATM 4 O O2 EDO . . . I 6 -14.103 -50.527 2.72 1 72.1 ? O2 EDO 301 E 1 # _model_server_stats.io_time_ms 16 _model_server_stats.parse_time_ms 23 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 313 _model_server_stats.encode_time_ms 10 _model_server_stats.element_count 4 #