data_6ZL3
#
_model_server_result.job_id            2_WreI7YUIZaWak9B8QwWg 
_model_server_result.datetime_utc      '2024-11-05 11:02:13' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6zl3 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"B","auth_seq_id":201}' 
#
_entry.id    6ZL3 
#
_exptl.entry_id    6ZL3 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              22.99 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'SODIUM ION' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            6ZL3 
_cell.length_a            93.067 
_cell.length_b            93.067 
_cell.length_c            55.441 
_cell.Z_PDB               6 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6ZL3 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        150 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 3 2 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             B 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OG SER 18 A SER 17 1_555 B NA NA . A NA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.229 ? 
metalc ? metalc2 B NA NA . A NA 201 1_555 C O2B GDP . A GDP 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.212 ? 
metalc ? metalc3 B NA NA . A NA 201 1_555 E O HOH . A HOH 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.233 ? 
metalc ? metalc4 B NA NA . A NA 201 1_555 E O HOH . A HOH 307 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.276 ? 
metalc ? metalc5 B NA NA . A NA 201 1_555 E O HOH . A HOH 319 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.335 ? 
metalc ? metalc6 B NA NA . A NA 201 1_555 E O HOH . A HOH 327 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.239 ? 
#
_chem_comp.formula           'Na 1' 
_chem_comp.formula_weight    22.99 
_chem_comp.id                NA 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'SODIUM ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     6ZL3 
_atom_sites.fract_transf_matrix[1][1]    0.010745 
_atom_sites.fract_transf_matrix[1][2]    0.006204 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.012407 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.018037 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 NA A 1 201 1 NA NA . 
C 3 GDP A 1 202 1 GDP GDP . 
D 4 EZZ A 1 203 1 EZZ LIG . 
E 5 HOH A 1 301 75 HOH HOH . 
E 5 HOH A 2 302 7 HOH HOH . 
E 5 HOH A 3 303 118 HOH HOH . 
E 5 HOH A 4 304 134 HOH HOH . 
E 5 HOH A 5 305 106 HOH HOH . 
E 5 HOH A 6 306 68 HOH HOH . 
E 5 HOH A 7 307 76 HOH HOH . 
E 5 HOH A 8 308 3 HOH HOH . 
E 5 HOH A 9 309 6 HOH HOH . 
E 5 HOH A 10 310 129 HOH HOH . 
E 5 HOH A 11 311 16 HOH HOH . 
E 5 HOH A 12 312 138 HOH HOH . 
E 5 HOH A 13 313 110 HOH HOH . 
E 5 HOH A 14 314 139 HOH HOH . 
E 5 HOH A 15 315 2 HOH HOH . 
E 5 HOH A 16 316 70 HOH HOH . 
E 5 HOH A 17 317 83 HOH HOH . 
E 5 HOH A 18 318 22 HOH HOH . 
E 5 HOH A 19 319 74 HOH HOH . 
E 5 HOH A 20 320 29 HOH HOH . 
E 5 HOH A 21 321 123 HOH HOH . 
E 5 HOH A 22 322 13 HOH HOH . 
E 5 HOH A 23 323 86 HOH HOH . 
E 5 HOH A 24 324 98 HOH HOH . 
E 5 HOH A 25 325 97 HOH HOH . 
E 5 HOH A 26 326 100 HOH HOH . 
E 5 HOH A 27 327 87 HOH HOH . 
E 5 HOH A 28 328 143 HOH HOH . 
E 5 HOH A 29 329 17 HOH HOH . 
E 5 HOH A 30 330 78 HOH HOH . 
E 5 HOH A 31 331 19 HOH HOH . 
E 5 HOH A 32 332 113 HOH HOH . 
E 5 HOH A 33 333 95 HOH HOH . 
E 5 HOH A 34 334 11 HOH HOH . 
E 5 HOH A 35 335 79 HOH HOH . 
E 5 HOH A 36 336 40 HOH HOH . 
E 5 HOH A 37 337 65 HOH HOH . 
E 5 HOH A 38 338 23 HOH HOH . 
E 5 HOH A 39 339 80 HOH HOH . 
E 5 HOH A 40 340 102 HOH HOH . 
E 5 HOH A 41 341 27 HOH HOH . 
E 5 HOH A 42 342 90 HOH HOH . 
E 5 HOH A 43 343 91 HOH HOH . 
E 5 HOH A 44 344 14 HOH HOH . 
E 5 HOH A 45 345 20 HOH HOH . 
E 5 HOH A 46 346 94 HOH HOH . 
E 5 HOH A 47 347 15 HOH HOH . 
E 5 HOH A 48 348 121 HOH HOH . 
E 5 HOH A 49 349 1 HOH HOH . 
E 5 HOH A 50 350 125 HOH HOH . 
E 5 HOH A 51 351 89 HOH HOH . 
E 5 HOH A 52 352 107 HOH HOH . 
E 5 HOH A 53 353 41 HOH HOH . 
E 5 HOH A 54 354 128 HOH HOH . 
E 5 HOH A 55 355 114 HOH HOH . 
E 5 HOH A 56 356 39 HOH HOH . 
E 5 HOH A 57 357 4 HOH HOH . 
E 5 HOH A 58 358 105 HOH HOH . 
E 5 HOH A 59 359 84 HOH HOH . 
E 5 HOH A 60 360 9 HOH HOH . 
E 5 HOH A 61 361 127 HOH HOH . 
E 5 HOH A 62 362 130 HOH HOH . 
E 5 HOH A 63 363 45 HOH HOH . 
E 5 HOH A 64 364 24 HOH HOH . 
E 5 HOH A 65 365 141 HOH HOH . 
E 5 HOH A 66 366 124 HOH HOH . 
E 5 HOH A 67 367 81 HOH HOH . 
E 5 HOH A 68 368 10 HOH HOH . 
E 5 HOH A 69 369 26 HOH HOH . 
E 5 HOH A 70 370 18 HOH HOH . 
E 5 HOH A 71 371 122 HOH HOH . 
E 5 HOH A 72 372 5 HOH HOH . 
E 5 HOH A 73 373 33 HOH HOH . 
E 5 HOH A 74 374 12 HOH HOH . 
E 5 HOH A 75 375 137 HOH HOH . 
E 5 HOH A 76 376 104 HOH HOH . 
E 5 HOH A 77 377 37 HOH HOH . 
E 5 HOH A 78 378 131 HOH HOH . 
E 5 HOH A 79 379 120 HOH HOH . 
E 5 HOH A 80 380 42 HOH HOH . 
E 5 HOH A 81 381 43 HOH HOH . 
E 5 HOH A 82 382 61 HOH HOH . 
E 5 HOH A 83 383 140 HOH HOH . 
E 5 HOH A 84 384 32 HOH HOH . 
E 5 HOH A 85 385 101 HOH HOH . 
E 5 HOH A 86 386 63 HOH HOH . 
E 5 HOH A 87 387 88 HOH HOH . 
E 5 HOH A 88 388 93 HOH HOH . 
E 5 HOH A 89 389 109 HOH HOH . 
E 5 HOH A 90 390 92 HOH HOH . 
E 5 HOH A 91 391 133 HOH HOH . 
E 5 HOH A 92 392 46 HOH HOH . 
E 5 HOH A 93 393 96 HOH HOH . 
E 5 HOH A 94 394 66 HOH HOH . 
E 5 HOH A 95 395 119 HOH HOH . 
E 5 HOH A 96 396 116 HOH HOH . 
E 5 HOH A 97 397 142 HOH HOH . 
E 5 HOH A 98 398 77 HOH HOH . 
E 5 HOH A 99 399 38 HOH HOH . 
E 5 HOH A 100 400 126 HOH HOH . 
E 5 HOH A 101 401 82 HOH HOH . 
E 5 HOH A 102 402 111 HOH HOH . 
E 5 HOH A 103 403 73 HOH HOH . 
E 5 HOH A 104 404 34 HOH HOH . 
E 5 HOH A 105 405 25 HOH HOH . 
E 5 HOH A 106 406 59 HOH HOH . 
E 5 HOH A 107 407 8 HOH HOH . 
E 5 HOH A 108 408 132 HOH HOH . 
E 5 HOH A 109 409 103 HOH HOH . 
E 5 HOH A 110 410 135 HOH HOH . 
E 5 HOH A 111 411 35 HOH HOH . 
E 5 HOH A 112 412 44 HOH HOH . 
E 5 HOH A 113 413 64 HOH HOH . 
E 5 HOH A 114 414 112 HOH HOH . 
E 5 HOH A 115 415 117 HOH HOH . 
E 5 HOH A 116 416 62 HOH HOH . 
E 5 HOH A 117 417 67 HOH HOH . 
E 5 HOH A 118 418 57 HOH HOH . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           NA 
_atom_site.label_atom_id         NA 
_atom_site.label_comp_id         NA 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         B 
_atom_site.label_entity_id       2 
_atom_site.Cartn_x               28.388 
_atom_site.Cartn_y               -26.947 
_atom_site.Cartn_z               21.042 
_atom_site.occupancy             1 
_atom_site.B_iso_or_equiv        36.61 
_atom_site.pdbx_formal_charge    1 
_atom_site.auth_atom_id          NA 
_atom_site.auth_comp_id          NA 
_atom_site.auth_seq_id           201 
_atom_site.auth_asym_id          A 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              11 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    2 
_model_server_stats.query_time_ms           273 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           1 
#