data_6ZL3
#
_model_server_result.job_id            ugD4JoC12qDz7hBoBX2HlA 
_model_server_result.datetime_utc      '2024-11-22 22:12:26' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6zl3 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":203}' 
#
_entry.id    6ZL3 
#
_exptl.entry_id    6ZL3 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              321.373 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            (3~{S})-3-[2-[(dimethylamino)methyl]-1~{H}-indol-3-yl]-5-oxidanyl-2,3-dihydroisoindol-1-one 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            6ZL3 
_cell.length_a            93.067 
_cell.length_b            93.067 
_cell.length_c            55.441 
_cell.Z_PDB               6 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6ZL3 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        150 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 3 2 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      4 
_struct_asym.id                             D 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OG SER 18 A SER 17 1_555 B NA NA . A NA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.229 ? 
metalc ? metalc2 B NA NA . A NA 201 1_555 C O2B GDP . A GDP 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.212 ? 
metalc ? metalc3 B NA NA . A NA 201 1_555 E O HOH . A HOH 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.233 ? 
metalc ? metalc4 B NA NA . A NA 201 1_555 E O HOH . A HOH 307 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.276 ? 
metalc ? metalc5 B NA NA . A NA 201 1_555 E O HOH . A HOH 319 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.335 ? 
metalc ? metalc6 B NA NA . A NA 201 1_555 E O HOH . A HOH 327 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.239 ? 
#
_chem_comp.formula           'C19 H19 N3 O2' 
_chem_comp.formula_weight    321.373 
_chem_comp.id                EZZ 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              (3~{S})-3-[2-[(dimethylamino)methyl]-1~{H}-indol-3-yl]-5-oxidanyl-2,3-dihydroisoindol-1-one 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
O22 C3 EZZ sing 83 n n 
C2 C3 EZZ doub 84 n y 
C2 C1 EZZ sing 85 n y 
C3 C4 EZZ sing 86 n y 
C18 C19 EZZ doub 87 n y 
C18 C17 EZZ sing 88 n y 
C19 C16 EZZ sing 89 n y 
C17 C14 EZZ doub 90 n y 
C1 C6 EZZ doub 91 n y 
C4 C5 EZZ doub 92 n y 
C16 C15 EZZ doub 93 n y 
C14 C15 EZZ sing 94 n y 
C14 N13 EZZ sing 95 n y 
C15 C11 EZZ sing 96 n y 
C6 C5 EZZ sing 97 n y 
C6 C9 EZZ sing 98 n n 
C5 C7 EZZ sing 99 n n 
N13 C12 EZZ sing 100 n y 
C11 C12 EZZ doub 101 n y 
C11 C7 EZZ sing 102 n n 
C12 C20 EZZ sing 103 n n 
C9 O10 EZZ doub 104 n n 
C9 N8 EZZ sing 105 n n 
C7 N8 EZZ sing 106 n n 
C20 N21 EZZ sing 107 n n 
N21 C23 EZZ sing 108 n n 
N21 C24 EZZ sing 109 n n 
C4 H1 EZZ sing 110 n n 
C7 H2 EZZ sing 111 n n 
C17 H3 EZZ sing 112 n n 
C20 H4 EZZ sing 113 n n 
C20 H5 EZZ sing 114 n n 
C24 H6 EZZ sing 115 n n 
C24 H7 EZZ sing 116 n n 
C24 H8 EZZ sing 117 n n 
C1 H9 EZZ sing 118 n n 
C16 H10 EZZ sing 119 n n 
C18 H11 EZZ sing 120 n n 
C19 H12 EZZ sing 121 n n 
C2 H13 EZZ sing 122 n n 
C23 H14 EZZ sing 123 n n 
C23 H15 EZZ sing 124 n n 
C23 H16 EZZ sing 125 n n 
N13 H17 EZZ sing 126 n n 
N8 H19 EZZ sing 127 n n 
O22 H20 EZZ sing 128 n n 
#
_atom_sites.entry_id                     6ZL3 
_atom_sites.fract_transf_matrix[1][1]    0.010745 
_atom_sites.fract_transf_matrix[1][2]    0.006204 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.012407 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.018037 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 NA A 1 201 1 NA NA . 
C 3 GDP A 1 202 1 GDP GDP . 
D 4 EZZ A 1 203 1 EZZ LIG . 
E 5 HOH A 1 301 75 HOH HOH . 
E 5 HOH A 2 302 7 HOH HOH . 
E 5 HOH A 3 303 118 HOH HOH . 
E 5 HOH A 4 304 134 HOH HOH . 
E 5 HOH A 5 305 106 HOH HOH . 
E 5 HOH A 6 306 68 HOH HOH . 
E 5 HOH A 7 307 76 HOH HOH . 
E 5 HOH A 8 308 3 HOH HOH . 
E 5 HOH A 9 309 6 HOH HOH . 
E 5 HOH A 10 310 129 HOH HOH . 
E 5 HOH A 11 311 16 HOH HOH . 
E 5 HOH A 12 312 138 HOH HOH . 
E 5 HOH A 13 313 110 HOH HOH . 
E 5 HOH A 14 314 139 HOH HOH . 
E 5 HOH A 15 315 2 HOH HOH . 
E 5 HOH A 16 316 70 HOH HOH . 
E 5 HOH A 17 317 83 HOH HOH . 
E 5 HOH A 18 318 22 HOH HOH . 
E 5 HOH A 19 319 74 HOH HOH . 
E 5 HOH A 20 320 29 HOH HOH . 
E 5 HOH A 21 321 123 HOH HOH . 
E 5 HOH A 22 322 13 HOH HOH . 
E 5 HOH A 23 323 86 HOH HOH . 
E 5 HOH A 24 324 98 HOH HOH . 
E 5 HOH A 25 325 97 HOH HOH . 
E 5 HOH A 26 326 100 HOH HOH . 
E 5 HOH A 27 327 87 HOH HOH . 
E 5 HOH A 28 328 143 HOH HOH . 
E 5 HOH A 29 329 17 HOH HOH . 
E 5 HOH A 30 330 78 HOH HOH . 
E 5 HOH A 31 331 19 HOH HOH . 
E 5 HOH A 32 332 113 HOH HOH . 
E 5 HOH A 33 333 95 HOH HOH . 
E 5 HOH A 34 334 11 HOH HOH . 
E 5 HOH A 35 335 79 HOH HOH . 
E 5 HOH A 36 336 40 HOH HOH . 
E 5 HOH A 37 337 65 HOH HOH . 
E 5 HOH A 38 338 23 HOH HOH . 
E 5 HOH A 39 339 80 HOH HOH . 
E 5 HOH A 40 340 102 HOH HOH . 
E 5 HOH A 41 341 27 HOH HOH . 
E 5 HOH A 42 342 90 HOH HOH . 
E 5 HOH A 43 343 91 HOH HOH . 
E 5 HOH A 44 344 14 HOH HOH . 
E 5 HOH A 45 345 20 HOH HOH . 
E 5 HOH A 46 346 94 HOH HOH . 
E 5 HOH A 47 347 15 HOH HOH . 
E 5 HOH A 48 348 121 HOH HOH . 
E 5 HOH A 49 349 1 HOH HOH . 
E 5 HOH A 50 350 125 HOH HOH . 
E 5 HOH A 51 351 89 HOH HOH . 
E 5 HOH A 52 352 107 HOH HOH . 
E 5 HOH A 53 353 41 HOH HOH . 
E 5 HOH A 54 354 128 HOH HOH . 
E 5 HOH A 55 355 114 HOH HOH . 
E 5 HOH A 56 356 39 HOH HOH . 
E 5 HOH A 57 357 4 HOH HOH . 
E 5 HOH A 58 358 105 HOH HOH . 
E 5 HOH A 59 359 84 HOH HOH . 
E 5 HOH A 60 360 9 HOH HOH . 
E 5 HOH A 61 361 127 HOH HOH . 
E 5 HOH A 62 362 130 HOH HOH . 
E 5 HOH A 63 363 45 HOH HOH . 
E 5 HOH A 64 364 24 HOH HOH . 
E 5 HOH A 65 365 141 HOH HOH . 
E 5 HOH A 66 366 124 HOH HOH . 
E 5 HOH A 67 367 81 HOH HOH . 
E 5 HOH A 68 368 10 HOH HOH . 
E 5 HOH A 69 369 26 HOH HOH . 
E 5 HOH A 70 370 18 HOH HOH . 
E 5 HOH A 71 371 122 HOH HOH . 
E 5 HOH A 72 372 5 HOH HOH . 
E 5 HOH A 73 373 33 HOH HOH . 
E 5 HOH A 74 374 12 HOH HOH . 
E 5 HOH A 75 375 137 HOH HOH . 
E 5 HOH A 76 376 104 HOH HOH . 
E 5 HOH A 77 377 37 HOH HOH . 
E 5 HOH A 78 378 131 HOH HOH . 
E 5 HOH A 79 379 120 HOH HOH . 
E 5 HOH A 80 380 42 HOH HOH . 
E 5 HOH A 81 381 43 HOH HOH . 
E 5 HOH A 82 382 61 HOH HOH . 
E 5 HOH A 83 383 140 HOH HOH . 
E 5 HOH A 84 384 32 HOH HOH . 
E 5 HOH A 85 385 101 HOH HOH . 
E 5 HOH A 86 386 63 HOH HOH . 
E 5 HOH A 87 387 88 HOH HOH . 
E 5 HOH A 88 388 93 HOH HOH . 
E 5 HOH A 89 389 109 HOH HOH . 
E 5 HOH A 90 390 92 HOH HOH . 
E 5 HOH A 91 391 133 HOH HOH . 
E 5 HOH A 92 392 46 HOH HOH . 
E 5 HOH A 93 393 96 HOH HOH . 
E 5 HOH A 94 394 66 HOH HOH . 
E 5 HOH A 95 395 119 HOH HOH . 
E 5 HOH A 96 396 116 HOH HOH . 
E 5 HOH A 97 397 142 HOH HOH . 
E 5 HOH A 98 398 77 HOH HOH . 
E 5 HOH A 99 399 38 HOH HOH . 
E 5 HOH A 100 400 126 HOH HOH . 
E 5 HOH A 101 401 82 HOH HOH . 
E 5 HOH A 102 402 111 HOH HOH . 
E 5 HOH A 103 403 73 HOH HOH . 
E 5 HOH A 104 404 34 HOH HOH . 
E 5 HOH A 105 405 25 HOH HOH . 
E 5 HOH A 106 406 59 HOH HOH . 
E 5 HOH A 107 407 8 HOH HOH . 
E 5 HOH A 108 408 132 HOH HOH . 
E 5 HOH A 109 409 103 HOH HOH . 
E 5 HOH A 110 410 135 HOH HOH . 
E 5 HOH A 111 411 35 HOH HOH . 
E 5 HOH A 112 412 44 HOH HOH . 
E 5 HOH A 113 413 64 HOH HOH . 
E 5 HOH A 114 414 112 HOH HOH . 
E 5 HOH A 115 415 117 HOH HOH . 
E 5 HOH A 116 416 62 HOH HOH . 
E 5 HOH A 117 417 67 HOH HOH . 
E 5 HOH A 118 418 57 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C4 EZZ . . . D 4 23.235 -38.389 26.108 1 41.82 ? C4 EZZ 203 A 1 
HETATM 2 C C5 EZZ . . . D 4 22.883 -39.73 25.99 1 41.7 ? C5 EZZ 203 A 1 
HETATM 3 C C6 EZZ . . . D 4 23.847 -40.712 26.102 1 41.22 ? C6 EZZ 203 A 1 
HETATM 4 C C7 EZZ . . . D 4 21.544 -40.368 25.699 1 42.33 ? C7 EZZ 203 A 1 
HETATM 5 C C15 EZZ . . . D 4 21.629 -40.234 23.047 1 44.15 ? C15 EZZ 203 A 1 
HETATM 6 C C17 EZZ . . . D 4 21.086 -39.667 20.729 1 44.72 ? C17 EZZ 203 A 1 
HETATM 7 C C20 EZZ . . . D 4 18.995 -38.61 25.126 1 45.55 ? C20 EZZ 203 A 1 
HETATM 8 C C24 EZZ . . . D 4 16.693 -38.433 25.783 1 46.33 ? C24 EZZ 203 A 1 
HETATM 9 C C1 EZZ . . . D 4 25.183 -40.37 26.324 1 41.33 ? C1 EZZ 203 A 1 
HETATM 10 C C11 EZZ . . . D 4 21.065 -39.927 24.34 1 44.19 ? C11 EZZ 203 A 1 
HETATM 11 C C12 EZZ . . . D 4 19.96 -39.159 24.121 1 45.38 ? C12 EZZ 203 A 1 
HETATM 12 C C14 EZZ . . . D 4 20.822 -39.586 22.092 1 44.89 ? C14 EZZ 203 A 1 
HETATM 13 C C16 EZZ . . . D 4 22.752 -40.93 22.609 1 44.47 ? C16 EZZ 203 A 1 
HETATM 14 C C18 EZZ . . . D 4 22.202 -40.385 20.32 1 44.58 ? C18 EZZ 203 A 1 
HETATM 15 C C19 EZZ . . . D 4 23.012 -41.029 21.247 1 44.65 ? C19 EZZ 203 A 1 
HETATM 16 C C2 EZZ . . . D 4 25.534 -39.033 26.458 1 41.24 ? C2 EZZ 203 A 1 
HETATM 17 C C23 EZZ . . . D 4 17.653 -40.599 25.423 1 46.09 ? C23 EZZ 203 A 1 
HETATM 18 C C3 EZZ . . . D 4 24.556 -38.046 26.371 1 41.87 ? C3 EZZ 203 A 1 
HETATM 19 C C9 EZZ . . . D 4 23.196 -42.029 25.91 1 41.23 ? C9 EZZ 203 A 1 
HETATM 20 N N13 EZZ . . . D 4 19.827 -38.906 22.776 1 45.47 ? N13 EZZ 203 A 1 
HETATM 21 N N21 EZZ . . . D 4 17.658 -39.195 25.001 1 46.36 ? N21 EZZ 203 A 1 
HETATM 22 N N8 EZZ . . . D 4 21.89 -41.782 25.713 1 41.47 ? N8 EZZ 203 A 1 
HETATM 23 O O10 EZZ . . . D 4 23.723 -43.134 25.944 1 41.7 ? O10 EZZ 203 A 1 
HETATM 24 O O22 EZZ . . . D 4 24.851 -36.72 26.555 1 42.07 ? O22 EZZ 203 A 1 
#
_model_server_stats.io_time_ms              49 
_model_server_stats.parse_time_ms           20 
_model_server_stats.create_model_time_ms    2 
_model_server_stats.query_time_ms           304 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           24 
#