data_6ZL4
#
_model_server_result.job_id            my_JQ99HtF9WYWLqEWRwMA 
_model_server_result.datetime_utc      '2024-11-15 19:50:47' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6zl4 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"CA","auth_seq_id":501}' 
#
_entry.id    6ZL4 
#
_exptl.entry_id    6ZL4 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              375.376 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '(2~{S},3~{S})-2-azanyl-3-[[4-[2-(4-methoxyphenyl)hydrazinyl]phenyl]methoxy]butanedioic acid' 
_entity.pdbx_number_of_molecules    3 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            6ZL4 
_cell.length_a            117.21 
_cell.length_b            117.21 
_cell.length_c            309.41 
_cell.Z_PDB               18 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6ZL4 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        154 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 32 2 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    trimeric 
_pdbx_struct_assembly.oligomeric_count      3 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 D N N 
? 2 P N N 
? 2 CA N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A O TYR 91 A TYR 91 1_555 L NA NA . A NA 509 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.369 ? 
metalc ? metalc2 A OG1 THR 94 A THR 94 1_555 L NA NA . A NA 509 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.502 ? 
metalc ? metalc3 A OG SER 95 A SER 95 1_555 L NA NA . A NA 509 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.746 ? 
metalc ? metalc4 A O GLY 309 A GLY 309 1_555 K NA NA . A NA 508 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.936 ? 
metalc ? metalc5 A O ASN 313 A ASN 313 1_555 K NA NA . A NA 508 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.551 ? 
metalc ? metalc6 A OD1 ASN 313 A ASN 313 1_555 L NA NA . A NA 509 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.343 ? 
metalc ? metalc7 A OD1 ASP 315 A ASP 315 1_555 L NA NA . A NA 509 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.297 ? 
metalc ? metalc8 A OD2 ASP 409 A ASP 409 1_555 K NA NA . A NA 508 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.876 ? 
metalc ? metalc9 D O4 QM5 . A QM5 501 1_555 M NA NA . A NA 510 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.972 ? 
metalc ? metalc10 B O TYR 91 B TYR 91 1_555 X NA NA . B NA 509 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.434 ? 
metalc ? metalc11 B OG1 THR 94 B THR 94 1_555 X NA NA . B NA 509 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.384 ? 
metalc ? metalc12 B OG SER 95 B SER 95 1_555 X NA NA . B NA 509 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.929 ? 
metalc ? metalc13 B O ASN 313 B ASN 313 1_555 W NA NA . B NA 508 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.514 ? 
metalc ? metalc14 B OD1 ASN 313 B ASN 313 1_555 X NA NA . B NA 509 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.377 ? 
metalc ? metalc15 B OD1 ASP 315 B ASP 315 1_555 X NA NA . B NA 509 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.369 ? 
metalc ? metalc16 B OD2 ASP 409 B ASP 409 1_555 W NA NA . B NA 508 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.842 ? 
metalc ? metalc17 C O TYR 91 C TYR 91 1_555 HA NA NA . C NA 506 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.386 ? 
metalc ? metalc18 C OG1 THR 94 C THR 94 1_555 HA NA NA . C NA 506 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.652 ? 
metalc ? metalc19 C OG SER 95 C SER 95 1_555 HA NA NA . C NA 506 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.591 ? 
metalc ? metalc20 C O ASN 313 C ASN 313 1_555 GA NA NA . C NA 505 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.421 ? 
metalc ? metalc21 C OD1 ASN 313 C ASN 313 1_555 HA NA NA . C NA 506 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.413 ? 
metalc ? metalc22 C OD1 ASP 315 C ASP 315 1_555 HA NA NA . C NA 506 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.344 ? 
metalc ? metalc23 C O ASN 405 C ASN 405 1_555 GA NA NA . C NA 505 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.009 ? 
metalc ? metalc24 C OD1 ASP 409 C ASP 409 1_555 GA NA NA . C NA 505 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.038 ? 
metalc ? metalc25 C OD2 ASP 409 C ASP 409 1_555 GA NA NA . C NA 505 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.752 ? 
#
_chem_comp.formula           'C18 H21 N3 O6' 
_chem_comp.formula_weight    375.376 
_chem_comp.id                QM5 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '(2~{S},3~{S})-2-azanyl-3-[[4-[2-(4-methoxyphenyl)hydrazinyl]phenyl]methoxy]butanedioic acid' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
O5 C11 QM5 doub 444 n n 
O4 C11 QM5 sing 445 n n 
C11 C10 QM5 sing 446 n n 
O1 C8 QM5 sing 447 n n 
O1 C7 QM5 sing 448 n n 
C10 N1 QM5 sing 449 n n 
C10 C8 QM5 sing 450 n n 
C2 C1 QM5 doub 451 n y 
C2 C3 QM5 sing 452 n y 
C1 C6 QM5 sing 453 n y 
C8 C9 QM5 sing 454 n n 
N2 C3 QM5 sing 455 n n 
N2 N3 QM5 sing 456 n n 
C3 C4 QM5 doub 457 n y 
C6 C7 QM5 sing 458 n n 
C6 C5 QM5 doub 459 n y 
C4 C5 QM5 sing 460 n y 
C13 C14 QM5 doub 461 n y 
C13 C12 QM5 sing 462 n y 
N3 C12 QM5 sing 463 n n 
C9 O2 QM5 doub 464 n n 
C9 O3 QM5 sing 465 n n 
C14 C15 QM5 sing 466 n y 
C12 C17 QM5 doub 467 n y 
C15 O6 QM5 sing 468 n n 
C15 C16 QM5 doub 469 n y 
C17 C16 QM5 sing 470 n y 
O6 C18 QM5 sing 471 n n 
C4 H1 QM5 sing 472 n n 
C14 H2 QM5 sing 473 n n 
C5 H3 QM5 sing 474 n n 
C7 H4 QM5 sing 475 n n 
C7 H5 QM5 sing 476 n n 
C8 H6 QM5 sing 477 n n 
C10 H7 QM5 sing 478 n n 
C13 H8 QM5 sing 479 n n 
N1 H9 QM5 sing 480 n n 
N1 H10 QM5 sing 481 n n 
N2 H12 QM5 sing 482 n n 
N3 H13 QM5 sing 483 n n 
C1 H14 QM5 sing 484 n n 
C16 H15 QM5 sing 485 n n 
C17 H16 QM5 sing 486 n n 
C18 H17 QM5 sing 487 n n 
C18 H18 QM5 sing 488 n n 
C18 H19 QM5 sing 489 n n 
C2 H20 QM5 sing 490 n n 
O3 H21 QM5 sing 491 n n 
O4 H22 QM5 sing 492 n n 
#
_atom_sites.entry_id                     6ZL4 
_atom_sites.fract_transf_matrix[1][1]    0.008532 
_atom_sites.fract_transf_matrix[1][2]    0.004926 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.009852 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.003232 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
D 2 QM5 A 1 501 501 QM5 DRG . 
E 3 DMU A 1 502 601 DMU DMU . 
F 4 PG4 A 1 503 901 PG4 PG4 . 
G 4 PG4 A 1 504 1001 PG4 PG4 . 
H 5 PGE A 1 505 1101 PGE PGE . 
I 4 PG4 A 1 506 1201 PG4 PG4 . 
J 5 PGE A 1 507 1301 PGE PGE . 
K 6 NA A 1 508 1 NA NA . 
L 6 NA A 1 509 2 NA NA . 
M 6 NA A 1 510 8 NA NA . 
N 7 PEG A 1 511 8 PEG PEG . 
O 7 PEG A 1 512 11 PEG PEG . 
P 2 QM5 B 1 501 501 QM5 DRG . 
Q 5 PGE B 1 502 601 PGE PGE . 
R 7 PEG B 1 503 701 PEG PEG . 
S 7 PEG B 1 504 801 PEG PEG . 
T 3 DMU B 1 505 901 DMU DMU . 
U 5 PGE B 1 506 1001 PGE PGE . 
V 5 PGE B 1 507 1101 PGE PGE . 
W 6 NA B 1 508 3 NA NA . 
X 6 NA B 1 509 4 NA NA . 
Y 6 NA B 1 510 9 NA NA . 
Z 7 PEG B 1 511 2 PEG PEG . 
AA 7 PEG B 1 512 4 PEG PEG . 
BA 7 PEG B 1 513 12 PEG PEG . 
CA 2 QM5 C 1 501 501 QM5 DRG . 
DA 3 DMU C 1 502 601 DMU DMU . 
EA 5 PGE C 1 503 801 PGE PGE . 
FA 8 1PE C 1 504 901 1PE 1PE . 
GA 6 NA C 1 505 5 NA NA . 
HA 6 NA C 1 506 6 NA NA . 
IA 6 NA C 1 507 7 NA NA . 
JA 7 PEG C 1 508 6 PEG PEG . 
KA 7 PEG C 1 509 7 PEG PEG . 
LA 7 PEG C 1 510 9 PEG PEG . 
MA 7 PEG C 1 511 10 PEG PEG . 
NA 7 PEG C 1 512 13 PEG PEG . 
OA 7 PEG C 1 513 14 PEG PEG . 
PA 7 PEG C 1 514 15 PEG PEG . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C4 QM5 . . . CA 2 43.524 58.479 -19.96 1 192.76 ? C4 QM5 501 C 1 
HETATM 2 C C14 QM5 . . . CA 2 39.92 61.265 -21.247 1 225.22 ? C14 QM5 501 C 1 
HETATM 3 C C5 QM5 . . . CA 2 44.555 59.422 -20.139 1 187.89 ? C5 QM5 501 C 1 
HETATM 4 C C6 QM5 . . . CA 2 44.563 60.57 -19.368 1 191.64 ? C6 QM5 501 C 1 
HETATM 5 C C11 QM5 . . . CA 2 44.469 63.681 -22.516 1 184.74 ? C11 QM5 501 C 1 
HETATM 6 C C7 QM5 . . . CA 2 45.649 61.634 -19.53 1 186.07 ? C7 QM5 501 C 1 
HETATM 7 C C8 QM5 . . . CA 2 45.448 63.982 -20.204 1 190.11 ? C8 QM5 501 C 1 
HETATM 8 C C9 QM5 . . . CA 2 45.728 65.08 -19.206 1 191.19 ? C9 QM5 501 C 1 
HETATM 9 C C10 QM5 . . . CA 2 44.399 64.477 -21.171 1 188.99 ? C10 QM5 501 C 1 
HETATM 10 C C12 QM5 . . . CA 2 39.705 59.415 -19.69 1 219.66 ? C12 QM5 501 C 1 
HETATM 11 C C13 QM5 . . . CA 2 40.246 59.956 -20.858 1 222.33 ? C13 QM5 501 C 1 
HETATM 12 N N1 QM5 . . . CA 2 43.096 64.33 -20.595 1 190.5 ? N1 QM5 501 C 1 
HETATM 13 N N2 QM5 . . . CA 2 41.407 57.715 -18.812 1 206.3 ? N2 QM5 501 C 1 
HETATM 14 C C3 QM5 . . . CA 2 42.513 58.708 -19.006 1 202.92 ? C3 QM5 501 C 1 
HETATM 15 N N3 QM5 . . . CA 2 40.047 58.045 -19.275 1 211.22 ? N3 QM5 501 C 1 
HETATM 16 C C1 QM5 . . . CA 2 43.543 60.804 -18.413 1 199.35 ? C1 QM5 501 C 1 
HETATM 17 C C15 QM5 . . . CA 2 39.045 62.032 -20.462 1 229.11 ? C15 QM5 501 C 1 
HETATM 18 C C16 QM5 . . . CA 2 38.505 61.491 -19.3 1 229.11 ? C16 QM5 501 C 1 
HETATM 19 C C17 QM5 . . . CA 2 38.827 60.188 -18.904 1 222.43 ? C17 QM5 501 C 1 
HETATM 20 C C18 QM5 . . . CA 2 37.682 63.922 -20.157 1 223.03 ? C18 QM5 501 C 1 
HETATM 21 C C2 QM5 . . . CA 2 42.526 59.874 -18.234 1 202.9 ? C2 QM5 501 C 1 
HETATM 22 O O1 QM5 . . . CA 2 44.913 62.882 -19.475 1 186.95 ? O1 QM5 501 C 1 
HETATM 23 O O2 QM5 . . . CA 2 44.789 65.55 -18.548 1 194.29 ? O2 QM5 501 C 1 
HETATM 24 O O3 QM5 . . . CA 2 46.921 65.521 -19.034 1 189.86 ? O3 QM5 501 C 1 
HETATM 25 O O4 QM5 . . . CA 2 43.436 63.089 -22.958 1 187.87 ? O4 QM5 501 C 1 
HETATM 26 O O5 QM5 . . . CA 2 45.539 63.631 -23.156 1 183.6 ? O5 QM5 501 C 1 
HETATM 27 O O6 QM5 . . . CA 2 38.727 63.334 -20.863 1 224.92 ? O6 QM5 501 C 1 
#
_model_server_stats.io_time_ms              26 
_model_server_stats.parse_time_ms           14 
_model_server_stats.create_model_time_ms    31 
_model_server_stats.query_time_ms           286 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           27 
#