data_6ZL4
#
_model_server_result.job_id            oK8COeRqm8I5EmBO2LtDfQ 
_model_server_result.datetime_utc      '2024-11-15 19:12:31' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6zl4 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"Q","auth_seq_id":502}' 
#
_entry.id    6ZL4 
#
_exptl.entry_id    6ZL4 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              150.173 
_entity.id                          5 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'TRIETHYLENE GLYCOL' 
_entity.pdbx_number_of_molecules    6 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            6ZL4 
_cell.length_a            117.21 
_cell.length_b            117.21 
_cell.length_c            309.41 
_cell.Z_PDB               18 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6ZL4 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        154 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 32 2 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    trimeric 
_pdbx_struct_assembly.oligomeric_count      3 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 5 H N N 
? 5 J N N 
? 5 Q N N 
? 5 U N N 
? 5 V N N 
? 5 EA N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A O TYR 91 A TYR 91 1_555 L NA NA . A NA 509 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.369 ? 
metalc ? metalc2 A OG1 THR 94 A THR 94 1_555 L NA NA . A NA 509 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.502 ? 
metalc ? metalc3 A OG SER 95 A SER 95 1_555 L NA NA . A NA 509 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.746 ? 
metalc ? metalc4 A O GLY 309 A GLY 309 1_555 K NA NA . A NA 508 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.936 ? 
metalc ? metalc5 A O ASN 313 A ASN 313 1_555 K NA NA . A NA 508 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.551 ? 
metalc ? metalc6 A OD1 ASN 313 A ASN 313 1_555 L NA NA . A NA 509 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.343 ? 
metalc ? metalc7 A OD1 ASP 315 A ASP 315 1_555 L NA NA . A NA 509 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.297 ? 
metalc ? metalc8 A OD2 ASP 409 A ASP 409 1_555 K NA NA . A NA 508 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.876 ? 
metalc ? metalc9 D O4 QM5 . A QM5 501 1_555 M NA NA . A NA 510 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.972 ? 
metalc ? metalc10 B O TYR 91 B TYR 91 1_555 X NA NA . B NA 509 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.434 ? 
metalc ? metalc11 B OG1 THR 94 B THR 94 1_555 X NA NA . B NA 509 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.384 ? 
metalc ? metalc12 B OG SER 95 B SER 95 1_555 X NA NA . B NA 509 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.929 ? 
metalc ? metalc13 B O ASN 313 B ASN 313 1_555 W NA NA . B NA 508 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.514 ? 
metalc ? metalc14 B OD1 ASN 313 B ASN 313 1_555 X NA NA . B NA 509 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.377 ? 
metalc ? metalc15 B OD1 ASP 315 B ASP 315 1_555 X NA NA . B NA 509 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.369 ? 
metalc ? metalc16 B OD2 ASP 409 B ASP 409 1_555 W NA NA . B NA 508 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.842 ? 
metalc ? metalc17 C O TYR 91 C TYR 91 1_555 HA NA NA . C NA 506 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.386 ? 
metalc ? metalc18 C OG1 THR 94 C THR 94 1_555 HA NA NA . C NA 506 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.652 ? 
metalc ? metalc19 C OG SER 95 C SER 95 1_555 HA NA NA . C NA 506 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.591 ? 
metalc ? metalc20 C O ASN 313 C ASN 313 1_555 GA NA NA . C NA 505 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.421 ? 
metalc ? metalc21 C OD1 ASN 313 C ASN 313 1_555 HA NA NA . C NA 506 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.413 ? 
metalc ? metalc22 C OD1 ASP 315 C ASP 315 1_555 HA NA NA . C NA 506 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.344 ? 
metalc ? metalc23 C O ASN 405 C ASN 405 1_555 GA NA NA . C NA 505 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.009 ? 
metalc ? metalc24 C OD1 ASP 409 C ASP 409 1_555 GA NA NA . C NA 505 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.038 ? 
metalc ? metalc25 C OD2 ASP 409 C ASP 409 1_555 GA NA NA . C NA 505 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.752 ? 
#
_chem_comp.formula           'C6 H14 O4' 
_chem_comp.formula_weight    150.173 
_chem_comp.id                PGE 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'TRIETHYLENE GLYCOL' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 PGE sing 381 n n 
C1 C2 PGE sing 382 n n 
C1 H1 PGE sing 383 n n 
C1 H12 PGE sing 384 n n 
O1 HO1 PGE sing 385 n n 
C2 O2 PGE sing 386 n n 
C2 H2 PGE sing 387 n n 
C2 H22 PGE sing 388 n n 
O2 C3 PGE sing 389 n n 
C3 C4 PGE sing 390 n n 
C3 H3 PGE sing 391 n n 
C3 H32 PGE sing 392 n n 
C4 O3 PGE sing 393 n n 
C4 H4 PGE sing 394 n n 
C4 H42 PGE sing 395 n n 
O4 C6 PGE sing 396 n n 
O4 HO4 PGE sing 397 n n 
C6 C5 PGE sing 398 n n 
C6 H6 PGE sing 399 n n 
C6 H62 PGE sing 400 n n 
C5 O3 PGE sing 401 n n 
C5 H5 PGE sing 402 n n 
C5 H52 PGE sing 403 n n 
#
_atom_sites.entry_id                     6ZL4 
_atom_sites.fract_transf_matrix[1][1]    0.008532 
_atom_sites.fract_transf_matrix[1][2]    0.004926 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.009852 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.003232 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
D 2 QM5 A 1 501 501 QM5 DRG . 
E 3 DMU A 1 502 601 DMU DMU . 
F 4 PG4 A 1 503 901 PG4 PG4 . 
G 4 PG4 A 1 504 1001 PG4 PG4 . 
H 5 PGE A 1 505 1101 PGE PGE . 
I 4 PG4 A 1 506 1201 PG4 PG4 . 
J 5 PGE A 1 507 1301 PGE PGE . 
K 6 NA A 1 508 1 NA NA . 
L 6 NA A 1 509 2 NA NA . 
M 6 NA A 1 510 8 NA NA . 
N 7 PEG A 1 511 8 PEG PEG . 
O 7 PEG A 1 512 11 PEG PEG . 
P 2 QM5 B 1 501 501 QM5 DRG . 
Q 5 PGE B 1 502 601 PGE PGE . 
R 7 PEG B 1 503 701 PEG PEG . 
S 7 PEG B 1 504 801 PEG PEG . 
T 3 DMU B 1 505 901 DMU DMU . 
U 5 PGE B 1 506 1001 PGE PGE . 
V 5 PGE B 1 507 1101 PGE PGE . 
W 6 NA B 1 508 3 NA NA . 
X 6 NA B 1 509 4 NA NA . 
Y 6 NA B 1 510 9 NA NA . 
Z 7 PEG B 1 511 2 PEG PEG . 
AA 7 PEG B 1 512 4 PEG PEG . 
BA 7 PEG B 1 513 12 PEG PEG . 
CA 2 QM5 C 1 501 501 QM5 DRG . 
DA 3 DMU C 1 502 601 DMU DMU . 
EA 5 PGE C 1 503 801 PGE PGE . 
FA 8 1PE C 1 504 901 1PE 1PE . 
GA 6 NA C 1 505 5 NA NA . 
HA 6 NA C 1 506 6 NA NA . 
IA 6 NA C 1 507 7 NA NA . 
JA 7 PEG C 1 508 6 PEG PEG . 
KA 7 PEG C 1 509 7 PEG PEG . 
LA 7 PEG C 1 510 9 PEG PEG . 
MA 7 PEG C 1 511 10 PEG PEG . 
NA 7 PEG C 1 512 13 PEG PEG . 
OA 7 PEG C 1 513 14 PEG PEG . 
PA 7 PEG C 1 514 15 PEG PEG . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 PGE . . . Q 5 2.852 72.09 4.148 1 176.73 ? C1 PGE 502 B 1 
HETATM 2 O O1 PGE . . . Q 5 2.807 70.684 3.941 1 170.58 ? O1 PGE 502 B 1 
HETATM 3 C C2 PGE . . . Q 5 1.806 72.474 5.177 1 179.85 ? C2 PGE 502 B 1 
HETATM 4 O O2 PGE . . . Q 5 0.939 73.446 4.625 1 179.25 ? O2 PGE 502 B 1 
HETATM 5 C C3 PGE . . . Q 5 -0.424 73.214 4.914 1 173.9 ? C3 PGE 502 B 1 
HETATM 6 C C4 PGE . . . Q 5 -1.082 72.576 3.706 1 174.83 ? C4 PGE 502 B 1 
HETATM 7 O O4 PGE . . . Q 5 0.398 69.202 2.028 1 184.07 ? O4 PGE 502 B 1 
HETATM 8 C C6 PGE . . . Q 5 -0.923 69.082 2.543 1 186.09 ? C6 PGE 502 B 1 
HETATM 9 C C5 PGE . . . Q 5 -1.515 70.462 2.762 1 183.48 ? C5 PGE 502 B 1 
HETATM 10 O O3 PGE . . . Q 5 -0.663 71.231 3.589 1 179.77 ? O3 PGE 502 B 1 
#
_model_server_stats.io_time_ms              76 
_model_server_stats.parse_time_ms           22 
_model_server_stats.create_model_time_ms    31 
_model_server_stats.query_time_ms           290 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           10 
#