data_6ZL4 # _model_server_result.job_id DgCQ0xQKcinh3IGTlIvsUg _model_server_result.datetime_utc '2024-11-15 19:46:13' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6zl4 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"T","auth_seq_id":505}' # _entry.id 6ZL4 # _exptl.entry_id 6ZL4 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 482.562 _entity.id 3 _entity.src_method man _entity.type non-polymer _entity.pdbx_description DECYL-BETA-D-MALTOPYRANOSIDE _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 6ZL4 _cell.length_a 117.21 _cell.length_b 117.21 _cell.length_c 309.41 _cell.Z_PDB 18 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6ZL4 _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 32 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 E N N ? 3 T N N ? 3 DA N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A O TYR 91 A TYR 91 1_555 L NA NA . A NA 509 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.369 ? metalc ? metalc2 A OG1 THR 94 A THR 94 1_555 L NA NA . A NA 509 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.502 ? metalc ? metalc3 A OG SER 95 A SER 95 1_555 L NA NA . A NA 509 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.746 ? metalc ? metalc4 A O GLY 309 A GLY 309 1_555 K NA NA . A NA 508 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.936 ? metalc ? metalc5 A O ASN 313 A ASN 313 1_555 K NA NA . A NA 508 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.551 ? metalc ? metalc6 A OD1 ASN 313 A ASN 313 1_555 L NA NA . A NA 509 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.343 ? metalc ? metalc7 A OD1 ASP 315 A ASP 315 1_555 L NA NA . A NA 509 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.297 ? metalc ? metalc8 A OD2 ASP 409 A ASP 409 1_555 K NA NA . A NA 508 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.876 ? metalc ? metalc9 D O4 QM5 . A QM5 501 1_555 M NA NA . A NA 510 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.972 ? metalc ? metalc10 B O TYR 91 B TYR 91 1_555 X NA NA . B NA 509 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.434 ? metalc ? metalc11 B OG1 THR 94 B THR 94 1_555 X NA NA . B NA 509 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.384 ? metalc ? metalc12 B OG SER 95 B SER 95 1_555 X NA NA . B NA 509 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.929 ? metalc ? metalc13 B O ASN 313 B ASN 313 1_555 W NA NA . B NA 508 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.514 ? metalc ? metalc14 B OD1 ASN 313 B ASN 313 1_555 X NA NA . B NA 509 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.377 ? metalc ? metalc15 B OD1 ASP 315 B ASP 315 1_555 X NA NA . B NA 509 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.369 ? metalc ? metalc16 B OD2 ASP 409 B ASP 409 1_555 W NA NA . B NA 508 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.842 ? metalc ? metalc17 C O TYR 91 C TYR 91 1_555 HA NA NA . C NA 506 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.386 ? metalc ? metalc18 C OG1 THR 94 C THR 94 1_555 HA NA NA . C NA 506 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.652 ? metalc ? metalc19 C OG SER 95 C SER 95 1_555 HA NA NA . C NA 506 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.591 ? metalc ? metalc20 C O ASN 313 C ASN 313 1_555 GA NA NA . C NA 505 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.421 ? metalc ? metalc21 C OD1 ASN 313 C ASN 313 1_555 HA NA NA . C NA 506 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.413 ? metalc ? metalc22 C OD1 ASP 315 C ASP 315 1_555 HA NA NA . C NA 506 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.344 ? metalc ? metalc23 C O ASN 405 C ASN 405 1_555 GA NA NA . C NA 505 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.009 ? metalc ? metalc24 C OD1 ASP 409 C ASP 409 1_555 GA NA NA . C NA 505 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.038 ? metalc ? metalc25 C OD2 ASP 409 C ASP 409 1_555 GA NA NA . C NA 505 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.752 ? # _chem_comp.formula 'C22 H42 O11' _chem_comp.formula_weight 482.562 _chem_comp.id DMU _chem_comp.mon_nstd_flag . _chem_comp.name DECYL-BETA-D-MALTOPYRANOSIDE _chem_comp.type d-saccharide _chem_comp.pdbx_synonyms DECYLMALTOSIDE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C40 C37 DMU sing 107 n n C40 C43 DMU sing 108 n n C37 C34 DMU sing 109 n n C34 C31 DMU sing 110 n n C31 C28 DMU sing 111 n n C28 C25 DMU sing 112 n n C22 C25 DMU sing 113 n n C22 C19 DMU sing 114 n n O61 C57 DMU sing 115 n n O4 C7 DMU sing 116 n n C18 C19 DMU sing 117 n n C18 O16 DMU sing 118 n n O5 C6 DMU sing 119 n n O5 C4 DMU sing 120 n n C57 C4 DMU sing 121 n n C6 O16 DMU sing 122 n n C6 C1 DMU sing 123 n n C7 C5 DMU sing 124 n n C7 C8 DMU sing 125 n n C4 C3 DMU sing 126 n n O1 C10 DMU sing 127 n n O1 C9 DMU sing 128 n n C10 C5 DMU sing 129 n n C10 O7 DMU sing 130 n n C5 O3 DMU sing 131 n n O49 C1 DMU sing 132 n n C8 C9 DMU sing 133 n n C8 O2 DMU sing 134 n n C1 C2 DMU sing 135 n n C11 C9 DMU sing 136 n n C11 O6 DMU sing 137 n n C3 O7 DMU sing 138 n n C3 C2 DMU sing 139 n n C2 O55 DMU sing 140 n n C1 H1 DMU sing 141 n n C2 H2 DMU sing 142 n n C3 H3 DMU sing 143 n n C4 H4 DMU sing 144 n n C6 H5 DMU sing 145 n n C18 H6 DMU sing 146 n n C18 H7 DMU sing 147 n n C19 H8 DMU sing 148 n n C19 H9 DMU sing 149 n n C22 H10 DMU sing 150 n n C22 H11 DMU sing 151 n n C25 H12 DMU sing 152 n n C25 H13 DMU sing 153 n n C28 H14 DMU sing 154 n n C28 H15 DMU sing 155 n n C31 H16 DMU sing 156 n n C31 H17 DMU sing 157 n n C34 H18 DMU sing 158 n n C34 H19 DMU sing 159 n n C37 H20 DMU sing 160 n n C37 H21 DMU sing 161 n n C40 H22 DMU sing 162 n n C40 H23 DMU sing 163 n n C43 H24 DMU sing 164 n n C43 H25 DMU sing 165 n n C43 H26 DMU sing 166 n n O49 H27 DMU sing 167 n n O55 H28 DMU sing 168 n n C57 H29 DMU sing 169 n n C57 H30 DMU sing 170 n n O61 H31 DMU sing 171 n n C5 H32 DMU sing 172 n n C7 H33 DMU sing 173 n n C8 H34 DMU sing 174 n n C9 H35 DMU sing 175 n n C10 H36 DMU sing 176 n n O2 H37 DMU sing 177 n n O3 H38 DMU sing 178 n n O4 H39 DMU sing 179 n n C11 H40 DMU sing 180 n n C11 H41 DMU sing 181 n n O6 H42 DMU sing 182 n n # _atom_sites.entry_id 6ZL4 _atom_sites.fract_transf_matrix[1][1] 0.008532 _atom_sites.fract_transf_matrix[1][2] 0.004926 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009852 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.003232 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 2 QM5 A 1 501 501 QM5 DRG . E 3 DMU A 1 502 601 DMU DMU . F 4 PG4 A 1 503 901 PG4 PG4 . G 4 PG4 A 1 504 1001 PG4 PG4 . H 5 PGE A 1 505 1101 PGE PGE . I 4 PG4 A 1 506 1201 PG4 PG4 . J 5 PGE A 1 507 1301 PGE PGE . K 6 NA A 1 508 1 NA NA . L 6 NA A 1 509 2 NA NA . M 6 NA A 1 510 8 NA NA . N 7 PEG A 1 511 8 PEG PEG . O 7 PEG A 1 512 11 PEG PEG . P 2 QM5 B 1 501 501 QM5 DRG . Q 5 PGE B 1 502 601 PGE PGE . R 7 PEG B 1 503 701 PEG PEG . S 7 PEG B 1 504 801 PEG PEG . T 3 DMU B 1 505 901 DMU DMU . U 5 PGE B 1 506 1001 PGE PGE . V 5 PGE B 1 507 1101 PGE PGE . W 6 NA B 1 508 3 NA NA . X 6 NA B 1 509 4 NA NA . Y 6 NA B 1 510 9 NA NA . Z 7 PEG B 1 511 2 PEG PEG . AA 7 PEG B 1 512 4 PEG PEG . BA 7 PEG B 1 513 12 PEG PEG . CA 2 QM5 C 1 501 501 QM5 DRG . DA 3 DMU C 1 502 601 DMU DMU . EA 5 PGE C 1 503 801 PGE PGE . FA 8 1PE C 1 504 901 1PE 1PE . GA 6 NA C 1 505 5 NA NA . HA 6 NA C 1 506 6 NA NA . IA 6 NA C 1 507 7 NA NA . JA 7 PEG C 1 508 6 PEG PEG . KA 7 PEG C 1 509 7 PEG PEG . LA 7 PEG C 1 510 9 PEG PEG . MA 7 PEG C 1 511 10 PEG PEG . NA 7 PEG C 1 512 13 PEG PEG . OA 7 PEG C 1 513 14 PEG PEG . PA 7 PEG C 1 514 15 PEG PEG . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 DMU . . . T 3 11.763 26.189 -45.841 1 197.15 ? C1 DMU 505 B 1 HETATM 2 C C2 DMU . . . T 3 11.687 27.355 -46.774 1 196.58 ? C2 DMU 505 B 1 HETATM 3 C C3 DMU . . . T 3 12.761 28.377 -46.643 1 196.47 ? C3 DMU 505 B 1 HETATM 4 C C4 DMU . . . T 3 14.132 27.757 -46.44 1 190.41 ? C4 DMU 505 B 1 HETATM 5 O O5 DMU . . . T 3 14.121 26.81 -45.301 1 195.64 ? O5 DMU 505 B 1 HETATM 6 C C6 DMU . . . T 3 13.17 25.702 -45.526 1 199.37 ? C6 DMU 505 B 1 HETATM 7 O O7 DMU . . . T 3 12.768 29.17 -47.869 1 207.02 ? O7 DMU 505 B 1 HETATM 8 O O16 DMU . . . T 3 13.131 24.904 -44.38 1 202.13 ? O16 DMU 505 B 1 HETATM 9 C C18 DMU . . . T 3 14.414 24.577 -43.864 1 197.78 ? C18 DMU 505 B 1 HETATM 10 C C19 DMU . . . T 3 14.3 23.826 -42.477 1 189.33 ? C19 DMU 505 B 1 HETATM 11 C C22 DMU . . . T 3 13.652 24.768 -41.426 1 189.68 ? C22 DMU 505 B 1 HETATM 12 C C25 DMU . . . T 3 14.554 24.906 -40.179 1 190.2 ? C25 DMU 505 B 1 HETATM 13 C C28 DMU . . . T 3 14.092 23.904 -39.06 1 193.36 ? C28 DMU 505 B 1 HETATM 14 C C31 DMU . . . T 3 14.152 24.606 -37.688 1 191.83 ? C31 DMU 505 B 1 HETATM 15 C C34 DMU . . . T 3 14.867 23.688 -36.639 1 185.95 ? C34 DMU 505 B 1 HETATM 16 C C37 DMU . . . T 3 15.414 24.558 -35.472 1 176.16 ? C37 DMU 505 B 1 HETATM 17 C C40 DMU . . . T 3 16.685 23.885 -34.874 1 172.18 ? C40 DMU 505 B 1 HETATM 18 C C43 DMU . . . T 3 17.343 24.855 -33.849 1 164.05 ? C43 DMU 505 B 1 HETATM 19 O O49 DMU . . . T 3 11.036 25.095 -46.444 1 194.83 ? O49 DMU 505 B 1 HETATM 20 O O55 DMU . . . T 3 10.413 28.014 -46.546 1 196.83 ? O55 DMU 505 B 1 HETATM 21 C C57 DMU . . . T 3 15.156 28.815 -46.151 1 183.51 ? C57 DMU 505 B 1 HETATM 22 O O61 DMU . . . T 3 15.432 29.528 -47.319 1 181.43 ? O61 DMU 505 B 1 HETATM 23 C C5 DMU . . . T 3 11.156 30.886 -48.372 1 215.51 ? C5 DMU 505 B 1 HETATM 24 C C7 DMU . . . T 3 11.325 31.065 -49.811 1 216.62 ? C7 DMU 505 B 1 HETATM 25 C C8 DMU . . . T 3 12.721 31.126 -50.326 1 218.88 ? C8 DMU 505 B 1 HETATM 26 C C9 DMU . . . T 3 13.791 31.75 -49.364 1 221.93 ? C9 DMU 505 B 1 HETATM 27 O O1 DMU . . . T 3 13.53 31.404 -47.889 1 216.72 ? O1 DMU 505 B 1 HETATM 28 C C10 DMU . . . T 3 12.39 30.508 -47.614 1 214.76 ? C10 DMU 505 B 1 HETATM 29 O O2 DMU . . . T 3 13.141 29.811 -50.72 1 213.63 ? O2 DMU 505 B 1 HETATM 30 O O3 DMU . . . T 3 10.104 29.863 -48.144 1 213.85 ? O3 DMU 505 B 1 HETATM 31 O O4 DMU . . . T 3 10.629 32.318 -50.195 1 217.17 ? O4 DMU 505 B 1 HETATM 32 C C11 DMU . . . T 3 13.814 33.159 -49.529 1 223.16 ? C11 DMU 505 B 1 HETATM 33 O O6 DMU . . . T 3 14.83 33.519 -50.426 1 225.94 ? O6 DMU 505 B 1 # _model_server_stats.io_time_ms 26 _model_server_stats.parse_time_ms 18 _model_server_stats.create_model_time_ms 12 _model_server_stats.query_time_ms 323 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 33 #