data_6ZLH # _model_server_result.job_id 3ylYi6bhYvkpfVa811vsWg _model_server_result.datetime_utc '2024-11-15 19:42:47' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6zlh # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":501}' # _entry.id 6ZLH # _exptl.entry_id 6ZLH _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 375.376 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(2~{S},3~{S})-2-azanyl-3-[[4-[2-(4-methoxyphenyl)hydrazinyl]phenyl]methoxy]butanedioic acid' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 6ZLH _cell.length_a 116.79 _cell.length_b 116.79 _cell.length_c 310.18 _cell.Z_PDB 18 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6ZLH _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 31 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 D N N ? 2 P N N ? 2 CA N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A O TYR 91 A TYR 91 1_555 L NA NA . A NA 509 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.659 ? metalc ? metalc2 A OG1 THR 94 A THR 94 1_555 L NA NA . A NA 509 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.736 ? metalc ? metalc3 A OG SER 95 A SER 95 1_555 L NA NA . A NA 509 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.791 ? metalc ? metalc4 A O GLY 309 A GLY 309 1_555 K NA NA . A NA 508 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.879 ? metalc ? metalc5 A O ASN 313 A ASN 313 1_555 K NA NA . A NA 508 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.347 ? metalc ? metalc6 A OD1 ASN 313 A ASN 313 1_555 L NA NA . A NA 509 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.397 ? metalc ? metalc7 A OD1 ASP 315 A ASP 315 1_555 L NA NA . A NA 509 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.111 ? metalc ? metalc8 A O ASN 405 A ASN 405 1_555 K NA NA . A NA 508 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.943 ? metalc ? metalc9 A OD1 ASP 409 A ASP 409 1_555 K NA NA . A NA 508 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.747 ? metalc ? metalc10 A OD2 ASP 409 A ASP 409 1_555 K NA NA . A NA 508 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.014 ? metalc ? metalc11 B O TYR 91 B TYR 91 1_555 X NA NA . B NA 509 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.503 ? metalc ? metalc12 B OG1 THR 94 B THR 94 1_555 X NA NA . B NA 509 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.993 ? metalc ? metalc13 B OG SER 95 B SER 95 1_555 X NA NA . B NA 509 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.308 ? metalc ? metalc14 B OG SER 279 B SER 279 1_555 Y NA NA . B NA 510 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.107 ? metalc ? metalc15 B O GLY 309 B GLY 309 1_555 W NA NA . B NA 508 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.74 ? metalc ? metalc16 B O ASN 313 B ASN 313 1_555 W NA NA . B NA 508 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.601 ? metalc ? metalc17 B OD1 ASN 313 B ASN 313 1_555 X NA NA . B NA 509 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.598 ? metalc ? metalc18 B OD1 ASP 315 B ASP 315 1_555 X NA NA . B NA 509 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.223 ? metalc ? metalc19 B O ASN 405 B ASN 405 1_555 W NA NA . B NA 508 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.953 ? metalc ? metalc20 B OD1 ASP 409 B ASP 409 1_555 W NA NA . B NA 508 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.754 ? metalc ? metalc21 B OD2 ASP 409 B ASP 409 1_555 W NA NA . B NA 508 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.406 ? metalc ? metalc22 C O TYR 91 C TYR 91 1_555 HA NA NA . C NA 506 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.48 ? metalc ? metalc23 C OG1 THR 94 C THR 94 1_555 HA NA NA . C NA 506 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.77 ? metalc ? metalc24 C OG SER 95 C SER 95 1_555 HA NA NA . C NA 506 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.739 ? metalc ? metalc25 C O GLY 309 C GLY 309 1_555 GA NA NA . C NA 505 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.651 ? metalc ? metalc26 C O ASN 313 C ASN 313 1_555 GA NA NA . C NA 505 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.413 ? metalc ? metalc27 C OD1 ASN 313 C ASN 313 1_555 HA NA NA . C NA 506 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.324 ? metalc ? metalc28 C OD1 ASP 315 C ASP 315 1_555 HA NA NA . C NA 506 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.399 ? metalc ? metalc29 C O ASN 405 C ASN 405 1_555 GA NA NA . C NA 505 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.14 ? metalc ? metalc30 CA O4 QM5 . C QM5 501 1_555 IA NA NA . C NA 507 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.172 ? # _chem_comp.formula 'C18 H21 N3 O6' _chem_comp.formula_weight 375.376 _chem_comp.id QM5 _chem_comp.mon_nstd_flag . _chem_comp.name '(2~{S},3~{S})-2-azanyl-3-[[4-[2-(4-methoxyphenyl)hydrazinyl]phenyl]methoxy]butanedioic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O5 C11 QM5 doub 444 n n O4 C11 QM5 sing 445 n n C11 C10 QM5 sing 446 n n O1 C8 QM5 sing 447 n n O1 C7 QM5 sing 448 n n C10 N1 QM5 sing 449 n n C10 C8 QM5 sing 450 n n C2 C1 QM5 doub 451 n y C2 C3 QM5 sing 452 n y C1 C6 QM5 sing 453 n y C8 C9 QM5 sing 454 n n N2 C3 QM5 sing 455 n n N2 N3 QM5 sing 456 n n C3 C4 QM5 doub 457 n y C6 C7 QM5 sing 458 n n C6 C5 QM5 doub 459 n y C4 C5 QM5 sing 460 n y C13 C14 QM5 doub 461 n y C13 C12 QM5 sing 462 n y N3 C12 QM5 sing 463 n n C9 O2 QM5 doub 464 n n C9 O3 QM5 sing 465 n n C14 C15 QM5 sing 466 n y C12 C17 QM5 doub 467 n y C15 O6 QM5 sing 468 n n C15 C16 QM5 doub 469 n y C17 C16 QM5 sing 470 n y O6 C18 QM5 sing 471 n n C4 H1 QM5 sing 472 n n C14 H2 QM5 sing 473 n n C5 H3 QM5 sing 474 n n C7 H4 QM5 sing 475 n n C7 H5 QM5 sing 476 n n C8 H6 QM5 sing 477 n n C10 H7 QM5 sing 478 n n C13 H8 QM5 sing 479 n n N1 H9 QM5 sing 480 n n N1 H10 QM5 sing 481 n n N2 H12 QM5 sing 482 n n N3 H13 QM5 sing 483 n n C1 H14 QM5 sing 484 n n C16 H15 QM5 sing 485 n n C17 H16 QM5 sing 486 n n C18 H17 QM5 sing 487 n n C18 H18 QM5 sing 488 n n C18 H19 QM5 sing 489 n n C2 H20 QM5 sing 490 n n O3 H21 QM5 sing 491 n n O4 H22 QM5 sing 492 n n # _atom_sites.entry_id 6ZLH _atom_sites.fract_transf_matrix[1][1] 0.008562 _atom_sites.fract_transf_matrix[1][2] 0.004943 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009887 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.003224 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 2 QM5 A 1 501 501 QM5 QM5 . E 3 DMU A 1 502 601 DMU DMU . F 4 PG4 A 1 503 901 PG4 PG4 . G 4 PG4 A 1 504 1001 PG4 PG4 . H 5 PGE A 1 505 1101 PGE PGE . I 4 PG4 A 1 506 1201 PG4 PG4 . J 5 PGE A 1 507 1301 PGE PGE . K 6 NA A 1 508 1 NA NA . L 6 NA A 1 509 2 NA NA . M 6 NA A 1 510 8 NA NA . N 7 PEG A 1 511 8 PEG PEG . O 7 PEG A 1 512 11 PEG PEG . P 2 QM5 B 1 501 501 QM5 QM5 . Q 5 PGE B 1 502 601 PGE PGE . R 7 PEG B 1 503 701 PEG PEG . S 7 PEG B 1 504 801 PEG PEG . T 3 DMU B 1 505 901 DMU DMU . U 5 PGE B 1 506 1001 PGE PGE . V 5 PGE B 1 507 1101 PGE PGE . W 6 NA B 1 508 3 NA NA . X 6 NA B 1 509 4 NA NA . Y 6 NA B 1 510 9 NA NA . Z 7 PEG B 1 511 2 PEG PEG . AA 7 PEG B 1 512 4 PEG PEG . BA 7 PEG B 1 513 12 PEG PEG . CA 2 QM5 C 1 501 501 QM5 QM5 . DA 3 DMU C 1 502 601 DMU DMU . EA 5 PGE C 1 503 801 PGE PGE . FA 8 1PE C 1 504 901 1PE 1PE . GA 6 NA C 1 505 5 NA NA . HA 6 NA C 1 506 6 NA NA . IA 6 NA C 1 507 7 NA NA . JA 7 PEG C 1 508 6 PEG PEG . KA 7 PEG C 1 509 7 PEG PEG . LA 7 PEG C 1 510 9 PEG PEG . MA 7 PEG C 1 511 10 PEG PEG . NA 7 PEG C 1 512 13 PEG PEG . OA 7 PEG C 1 513 14 PEG PEG . PA 7 PEG C 1 514 15 PEG PEG . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C4 QM5 . . . D 2 -41.284 28.084 35.81 1 129.8 ? C4 QM5 501 A 1 HETATM 2 C C14 QM5 . . . D 2 -35.651 28.969 35.452 1 165.27 ? C14 QM5 501 A 1 HETATM 3 C C5 QM5 . . . D 2 -42.365 27.18 35.587 1 129.73 ? C5 QM5 501 A 1 HETATM 4 C C6 QM5 . . . D 2 -43.667 27.644 35.239 1 121.46 ? C6 QM5 501 A 1 HETATM 5 C C11 QM5 . . . D 2 -43.608 23.609 32.695 1 103.76 ? C11 QM5 501 A 1 HETATM 6 C C7 QM5 . . . D 2 -44.767 26.546 35.027 1 114.56 ? C7 QM5 501 A 1 HETATM 7 C C8 QM5 . . . D 2 -44.615 24.16 34.956 1 110.79 ? C8 QM5 501 A 1 HETATM 8 C C9 QM5 . . . D 2 -44.885 23.193 36.067 1 114.77 ? C9 QM5 501 A 1 HETATM 9 C C10 QM5 . . . D 2 -43.455 23.407 34.205 1 109.06 ? C10 QM5 501 A 1 HETATM 10 C C12 QM5 . . . D 2 -37.897 29.871 35.731 1 160.56 ? C12 QM5 501 A 1 HETATM 11 C C13 QM5 . . . D 2 -36.871 29.004 36.139 1 163.03 ? C13 QM5 501 A 1 HETATM 12 N N1 QM5 . . . D 2 -42.158 23.808 34.793 1 110.01 ? N1 QM5 501 A 1 HETATM 13 N N2 QM5 . . . D 2 -40.329 30.406 35.925 1 140.87 ? N2 QM5 501 A 1 HETATM 14 C C3 QM5 . . . D 2 -41.513 29.491 35.682 1 130.35 ? C3 QM5 501 A 1 HETATM 15 N N3 QM5 . . . D 2 -39.178 29.898 36.465 1 151.49 ? N3 QM5 501 A 1 HETATM 16 C C1 QM5 . . . D 2 -43.91 29.087 35.106 1 119.25 ? C1 QM5 501 A 1 HETATM 17 C C15 QM5 . . . D 2 -35.444 29.81 34.338 1 166.49 ? C15 QM5 501 A 1 HETATM 18 C C16 QM5 . . . D 2 -36.467 30.676 33.932 1 166.45 ? C16 QM5 501 A 1 HETATM 19 C C17 QM5 . . . D 2 -37.689 30.704 34.629 1 164.56 ? C17 QM5 501 A 1 HETATM 20 C C18 QM5 . . . D 2 -34.324 29.852 32.264 1 163.78 ? C18 QM5 501 A 1 HETATM 21 C C2 QM5 . . . D 2 -42.829 29.979 35.33 1 122.82 ? C2 QM5 501 A 1 HETATM 22 O O1 QM5 . . . D 2 -44.18 25.388 35.461 1 108.39 ? O1 QM5 501 A 1 HETATM 23 O O2 QM5 . . . D 2 -46.033 22.813 36.288 1 115.41 ? O2 QM5 501 A 1 HETATM 24 O O3 QM5 . . . D 2 -43.955 22.755 36.724 1 116.77 ? O3 QM5 501 A 1 HETATM 25 O O4 QM5 . . . D 2 -42.543 23.787 31.927 1 100.19 ? O4 QM5 501 A 1 HETATM 26 O O5 QM5 . . . D 2 -44.74 23.619 32.154 1 103.67 ? O5 QM5 501 A 1 HETATM 27 O O6 QM5 . . . D 2 -34.191 29.787 33.615 1 165.04 ? O6 QM5 501 A 1 # _model_server_stats.io_time_ms 25 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 35 _model_server_stats.query_time_ms 285 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 27 #