data_6ZLJ # _model_server_result.job_id 1_YBL-jxzrqZBh_oWjGBHA _model_server_result.datetime_utc '2024-11-07 19:09:29' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6zlj # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":401}' # _entry.id 6ZLJ # _exptl.entry_id 6ZLJ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 663.425 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description NICOTINAMIDE-ADENINE-DINUCLEOTIDE _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 97.25 _cell.angle_beta 98.18 _cell.angle_gamma 109.93 _cell.entry_id 6ZLJ _cell.length_a 42.199 _cell.length_b 58.222 _cell.length_c 64.439 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6ZLJ _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,G 1 1 B,E,F,H 1 2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 1_455 x-1,y,z 1 0 0 0 1 0 0 0 1 -42.199 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 E N N # _chem_comp.formula 'C21 H27 N7 O14 P2' _chem_comp.formula_weight 663.425 _chem_comp.id NAD _chem_comp.mon_nstd_flag . _chem_comp.name NICOTINAMIDE-ADENINE-DINUCLEOTIDE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A NAD doub 237 n n PA O2A NAD sing 238 n n PA O5B NAD sing 239 n n PA O3 NAD sing 240 n n O2A HOA2 NAD sing 241 n n O5B C5B NAD sing 242 n n C5B C4B NAD sing 243 n n C5B H51A NAD sing 244 n n C5B H52A NAD sing 245 n n C4B O4B NAD sing 246 n n C4B C3B NAD sing 247 n n C4B H4B NAD sing 248 n n O4B C1B NAD sing 249 n n C3B O3B NAD sing 250 n n C3B C2B NAD sing 251 n n C3B H3B NAD sing 252 n n O3B HO3A NAD sing 253 n n C2B O2B NAD sing 254 n n C2B C1B NAD sing 255 n n C2B H2B NAD sing 256 n n O2B HO2A NAD sing 257 n n C1B N9A NAD sing 258 n n C1B H1B NAD sing 259 n n N9A C8A NAD sing 260 n y N9A C4A NAD sing 261 n y C8A N7A NAD doub 262 n y C8A H8A NAD sing 263 n n N7A C5A NAD sing 264 n y C5A C6A NAD sing 265 n y C5A C4A NAD doub 266 n y C6A N6A NAD sing 267 n n C6A N1A NAD doub 268 n y N6A H61A NAD sing 269 n n N6A H62A NAD sing 270 n n N1A C2A NAD sing 271 n y C2A N3A NAD doub 272 n y C2A H2A NAD sing 273 n n N3A C4A NAD sing 274 n y O3 PN NAD sing 275 n n PN O1N NAD doub 276 n n PN O2N NAD sing 277 n n PN O5D NAD sing 278 n n O5D C5D NAD sing 279 n n C5D C4D NAD sing 280 n n C5D H51N NAD sing 281 n n C5D H52N NAD sing 282 n n C4D O4D NAD sing 283 n n C4D C3D NAD sing 284 n n C4D H4D NAD sing 285 n n O4D C1D NAD sing 286 n n C3D O3D NAD sing 287 n n C3D C2D NAD sing 288 n n C3D H3D NAD sing 289 n n O3D HO3N NAD sing 290 n n C2D O2D NAD sing 291 n n C2D C1D NAD sing 292 n n C2D H2D NAD sing 293 n n O2D HO2N NAD sing 294 n n C1D N1N NAD sing 295 n n C1D H1D NAD sing 296 n n N1N C2N NAD sing 297 n y N1N C6N NAD doub 298 n y C2N C3N NAD doub 299 n y C2N H2N NAD sing 300 n n C3N C7N NAD sing 301 n n C3N C4N NAD sing 302 n y C7N O7N NAD doub 303 n n C7N N7N NAD sing 304 n n N7N H71N NAD sing 305 n n N7N H72N NAD sing 306 n n C4N C5N NAD doub 307 n y C4N H4N NAD sing 308 n n C5N C6N NAD sing 309 n y C5N H5N NAD sing 310 n n C6N H6N NAD sing 311 n n # _atom_sites.entry_id 6ZLJ _atom_sites.fract_transf_matrix[1][1] 0.023697 _atom_sites.fract_transf_matrix[1][2] 0.00859 _atom_sites.fract_transf_matrix[1][3] 0.005111 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.018269 _atom_sites.fract_transf_matrix[2][3] 0.003491 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.015962 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 NAD A 1 401 401 NAD NAD . D 3 UGF A 1 402 402 UGF UGF . E 2 NAD B 1 801 801 NAD NAD . F 3 UGF B 1 802 802 UGF UGF . G 4 HOH A 1 501 501 HOH HOH . G 4 HOH A 2 502 502 HOH HOH . G 4 HOH A 3 503 503 HOH HOH . G 4 HOH A 4 504 508 HOH HOH . G 4 HOH A 5 505 505 HOH HOH . G 4 HOH A 6 506 506 HOH HOH . G 4 HOH A 7 507 504 HOH HOH . G 4 HOH A 8 508 507 HOH HOH . G 4 HOH A 9 509 510 HOH HOH . G 4 HOH A 10 510 509 HOH HOH . G 4 HOH A 11 511 512 HOH HOH . G 4 HOH A 12 512 511 HOH HOH . G 4 HOH A 13 513 513 HOH HOH . G 4 HOH A 14 514 514 HOH HOH . G 4 HOH A 15 515 518 HOH HOH . G 4 HOH A 16 516 517 HOH HOH . G 4 HOH A 17 517 520 HOH HOH . G 4 HOH A 18 518 519 HOH HOH . G 4 HOH A 19 519 516 HOH HOH . G 4 HOH A 20 520 515 HOH HOH . G 4 HOH A 21 521 521 HOH HOH . G 4 HOH A 22 522 524 HOH HOH . G 4 HOH A 23 523 523 HOH HOH . G 4 HOH A 24 524 522 HOH HOH . G 4 HOH A 25 525 525 HOH HOH . G 4 HOH A 26 526 526 HOH HOH . G 4 HOH A 27 527 527 HOH HOH . G 4 HOH A 28 528 528 HOH HOH . G 4 HOH A 29 529 536 HOH HOH . G 4 HOH A 30 530 529 HOH HOH . G 4 HOH A 31 531 531 HOH HOH . G 4 HOH A 32 532 530 HOH HOH . G 4 HOH A 33 533 532 HOH HOH . G 4 HOH A 34 534 534 HOH HOH . G 4 HOH A 35 535 535 HOH HOH . G 4 HOH A 36 536 540 HOH HOH . G 4 HOH A 37 537 539 HOH HOH . G 4 HOH A 38 538 542 HOH HOH . G 4 HOH A 39 539 533 HOH HOH . G 4 HOH A 40 540 537 HOH HOH . G 4 HOH A 41 541 545 HOH HOH . G 4 HOH A 42 542 538 HOH HOH . G 4 HOH A 43 543 546 HOH HOH . G 4 HOH A 44 544 547 HOH HOH . G 4 HOH A 45 545 543 HOH HOH . G 4 HOH A 46 546 544 HOH HOH . G 4 HOH A 47 547 541 HOH HOH . G 4 HOH A 48 548 553 HOH HOH . G 4 HOH A 49 549 548 HOH HOH . G 4 HOH A 50 550 554 HOH HOH . G 4 HOH A 51 551 552 HOH HOH . G 4 HOH A 52 552 550 HOH HOH . G 4 HOH A 53 553 551 HOH HOH . G 4 HOH A 54 554 549 HOH HOH . G 4 HOH A 55 555 558 HOH HOH . G 4 HOH A 56 556 557 HOH HOH . G 4 HOH A 57 557 555 HOH HOH . G 4 HOH A 58 558 556 HOH HOH . G 4 HOH A 59 559 561 HOH HOH . G 4 HOH A 60 560 562 HOH HOH . G 4 HOH A 61 561 559 HOH HOH . G 4 HOH A 62 562 560 HOH HOH . G 4 HOH A 63 563 963 HOH HOH . G 4 HOH A 64 564 564 HOH HOH . G 4 HOH A 65 565 563 HOH HOH . G 4 HOH A 66 566 565 HOH HOH . G 4 HOH A 67 567 566 HOH HOH . G 4 HOH A 68 568 569 HOH HOH . G 4 HOH A 69 569 570 HOH HOH . G 4 HOH A 70 570 568 HOH HOH . G 4 HOH A 71 571 567 HOH HOH . G 4 HOH A 72 572 976 HOH HOH . G 4 HOH A 73 573 571 HOH HOH . G 4 HOH A 74 574 572 HOH HOH . G 4 HOH A 75 575 573 HOH HOH . G 4 HOH A 76 576 574 HOH HOH . G 4 HOH A 77 577 575 HOH HOH . G 4 HOH A 78 578 576 HOH HOH . G 4 HOH A 79 579 577 HOH HOH . G 4 HOH A 80 580 578 HOH HOH . H 4 HOH B 1 901 901 HOH HOH . H 4 HOH B 2 902 902 HOH HOH . H 4 HOH B 3 903 903 HOH HOH . H 4 HOH B 4 904 904 HOH HOH . H 4 HOH B 5 905 906 HOH HOH . H 4 HOH B 6 906 905 HOH HOH . H 4 HOH B 7 907 908 HOH HOH . H 4 HOH B 8 908 907 HOH HOH . H 4 HOH B 9 909 911 HOH HOH . H 4 HOH B 10 910 910 HOH HOH . H 4 HOH B 11 911 912 HOH HOH . H 4 HOH B 12 912 914 HOH HOH . H 4 HOH B 13 913 909 HOH HOH . H 4 HOH B 14 914 913 HOH HOH . H 4 HOH B 15 915 917 HOH HOH . H 4 HOH B 16 916 916 HOH HOH . H 4 HOH B 17 917 915 HOH HOH . H 4 HOH B 18 918 926 HOH HOH . H 4 HOH B 19 919 918 HOH HOH . H 4 HOH B 20 920 921 HOH HOH . H 4 HOH B 21 921 920 HOH HOH . H 4 HOH B 22 922 923 HOH HOH . H 4 HOH B 23 923 927 HOH HOH . H 4 HOH B 24 924 922 HOH HOH . H 4 HOH B 25 925 925 HOH HOH . H 4 HOH B 26 926 932 HOH HOH . H 4 HOH B 27 927 931 HOH HOH . H 4 HOH B 28 928 928 HOH HOH . H 4 HOH B 29 929 919 HOH HOH . H 4 HOH B 30 930 929 HOH HOH . H 4 HOH B 31 931 933 HOH HOH . H 4 HOH B 32 932 924 HOH HOH . H 4 HOH B 33 933 930 HOH HOH . H 4 HOH B 34 934 936 HOH HOH . H 4 HOH B 35 935 935 HOH HOH . H 4 HOH B 36 936 934 HOH HOH . H 4 HOH B 37 937 937 HOH HOH . H 4 HOH B 38 938 938 HOH HOH . H 4 HOH B 39 939 940 HOH HOH . H 4 HOH B 40 940 942 HOH HOH . H 4 HOH B 41 941 939 HOH HOH . H 4 HOH B 42 942 946 HOH HOH . H 4 HOH B 43 943 947 HOH HOH . H 4 HOH B 44 944 945 HOH HOH . H 4 HOH B 45 945 944 HOH HOH . H 4 HOH B 46 946 943 HOH HOH . H 4 HOH B 47 947 950 HOH HOH . H 4 HOH B 48 948 948 HOH HOH . H 4 HOH B 49 949 951 HOH HOH . H 4 HOH B 50 950 941 HOH HOH . H 4 HOH B 51 951 953 HOH HOH . H 4 HOH B 52 952 949 HOH HOH . H 4 HOH B 53 953 952 HOH HOH . H 4 HOH B 54 954 955 HOH HOH . H 4 HOH B 55 955 954 HOH HOH . H 4 HOH B 56 956 956 HOH HOH . H 4 HOH B 57 957 959 HOH HOH . H 4 HOH B 58 958 957 HOH HOH . H 4 HOH B 59 959 958 HOH HOH . H 4 HOH B 60 960 962 HOH HOH . H 4 HOH B 61 961 961 HOH HOH . H 4 HOH B 62 962 960 HOH HOH . H 4 HOH B 63 963 965 HOH HOH . H 4 HOH B 64 964 966 HOH HOH . H 4 HOH B 65 965 964 HOH HOH . H 4 HOH B 66 966 967 HOH HOH . H 4 HOH B 67 967 969 HOH HOH . H 4 HOH B 68 968 968 HOH HOH . H 4 HOH B 69 969 971 HOH HOH . H 4 HOH B 70 970 972 HOH HOH . H 4 HOH B 71 971 970 HOH HOH . H 4 HOH B 72 972 977 HOH HOH . H 4 HOH B 73 973 975 HOH HOH . H 4 HOH B 74 974 973 HOH HOH . H 4 HOH B 75 975 974 HOH HOH . H 4 HOH B 76 976 979 HOH HOH . H 4 HOH B 77 977 978 HOH HOH . H 4 HOH B 78 978 980 HOH HOH . H 4 HOH B 79 979 981 HOH HOH . H 4 HOH B 80 980 982 HOH HOH . H 4 HOH B 81 981 983 HOH HOH . H 4 HOH B 82 982 985 HOH HOH . H 4 HOH B 83 983 984 HOH HOH . H 4 HOH B 84 984 987 HOH HOH . H 4 HOH B 85 985 986 HOH HOH . H 4 HOH B 86 986 988 HOH HOH . H 4 HOH B 87 987 989 HOH HOH . H 4 HOH B 88 988 990 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA NAD . . . C 2 6.181 2.448 -2.796 1 19.88 ? PA NAD 401 A 1 HETATM 2 O O1A NAD . . . C 2 6.548 2.664 -4.239 1 18.71 ? O1A NAD 401 A 1 HETATM 3 O O2A NAD . . . C 2 6.706 3.431 -1.827 1 19.53 ? O2A NAD 401 A 1 HETATM 4 O O5B NAD . . . C 2 6.542 0.978 -2.283 1 19.79 ? O5B NAD 401 A 1 HETATM 5 C C5B NAD . . . C 2 6.525 -0.223 -3.103 1 22.01 ? C5B NAD 401 A 1 HETATM 6 C C4B NAD . . . C 2 7.944 -0.761 -3.184 1 20.54 ? C4B NAD 401 A 1 HETATM 7 O O4B NAD . . . C 2 7.933 -1.937 -4.027 1 21.96 ? O4B NAD 401 A 1 HETATM 8 C C3B NAD . . . C 2 9.011 0.167 -3.803 1 21.65 ? C3B NAD 401 A 1 HETATM 9 O O3B NAD . . . C 2 9.87 0.639 -2.77 1 21.65 ? O3B NAD 401 A 1 HETATM 10 C C2B NAD . . . C 2 9.724 -0.704 -4.866 1 21.09 ? C2B NAD 401 A 1 HETATM 11 O O2B NAD . . . C 2 11.14 -0.584 -4.872 1 21.56 ? O2B NAD 401 A 1 HETATM 12 C C1B NAD . . . C 2 9.259 -2.104 -4.489 1 21.04 ? C1B NAD 401 A 1 HETATM 13 N N9A NAD . . . C 2 9.253 -3.027 -5.613 1 19.73 ? N9A NAD 401 A 1 HETATM 14 C C8A NAD . . . C 2 8.521 -2.903 -6.757 1 19.43 ? C8A NAD 401 A 1 HETATM 15 N N7A NAD . . . C 2 8.732 -3.854 -7.623 1 20.6 ? N7A NAD 401 A 1 HETATM 16 C C5A NAD . . . C 2 9.652 -4.69 -6.998 1 21.05 ? C5A NAD 401 A 1 HETATM 17 C C6A NAD . . . C 2 10.302 -5.872 -7.413 1 22.63 ? C6A NAD 401 A 1 HETATM 18 N N6A NAD . . . C 2 10.112 -6.433 -8.595 1 21.7 ? N6A NAD 401 A 1 HETATM 19 N N1A NAD . . . C 2 11.175 -6.441 -6.542 1 22.14 ? N1A NAD 401 A 1 HETATM 20 C C2A NAD . . . C 2 11.378 -5.846 -5.36 1 21.97 ? C2A NAD 401 A 1 HETATM 21 N N3A NAD . . . C 2 10.852 -4.716 -4.882 1 20.87 ? N3A NAD 401 A 1 HETATM 22 C C4A NAD . . . C 2 9.978 -4.191 -5.753 1 19.81 ? C4A NAD 401 A 1 HETATM 23 O O3 NAD . . . C 2 4.584 2.416 -2.782 1 20.48 ? O3 NAD 401 A 1 HETATM 24 P PN NAD . . . C 2 3.589 2.445 -1.496 1 19.89 ? PN NAD 401 A 1 HETATM 25 O O1N NAD . . . C 2 2.811 3.724 -1.645 1 20.2 ? O1N NAD 401 A 1 HETATM 26 O O2N NAD . . . C 2 4.375 2.084 -0.332 1 19.95 ? O2N NAD 401 A 1 HETATM 27 O O5D NAD . . . C 2 2.609 1.245 -1.82 1 20.55 ? O5D NAD 401 A 1 HETATM 28 C C5D NAD . . . C 2 2.764 -0.075 -1.205 1 19.86 ? C5D NAD 401 A 1 HETATM 29 C C4D NAD . . . C 2 1.652 -0.958 -1.705 1 22.12 ? C4D NAD 401 A 1 HETATM 30 O O4D NAD . . . C 2 0.382 -0.378 -1.319 1 22.14 ? O4D NAD 401 A 1 HETATM 31 C C3D NAD . . . C 2 1.586 -1.133 -3.23 1 21.3 ? C3D NAD 401 A 1 HETATM 32 O O3D NAD . . . C 2 1.151 -2.451 -3.531 1 22 ? O3D NAD 401 A 1 HETATM 33 C C2D NAD . . . C 2 0.504 -0.128 -3.626 1 21.03 ? C2D NAD 401 A 1 HETATM 34 O O2D NAD . . . C 2 -0.18 -0.449 -4.822 1 22.33 ? O2D NAD 401 A 1 HETATM 35 C C1D NAD . . . C 2 -0.434 -0.276 -2.433 1 20.15 ? C1D NAD 401 A 1 HETATM 36 N N1N NAD . . . C 2 -1.314 0.884 -2.199 1 23.04 ? N1N NAD 401 A 1 HETATM 37 C C2N NAD . . . C 2 -0.791 2.116 -1.895 1 22.13 ? C2N NAD 401 A 1 HETATM 38 C C3N NAD . . . C 2 -1.609 3.203 -1.66 1 21.93 ? C3N NAD 401 A 1 HETATM 39 C C7N NAD . . . C 2 -1.073 4.58 -1.348 1 22.8 ? C7N NAD 401 A 1 HETATM 40 O O7N NAD . . . C 2 -1.892 5.491 -1.255 1 22.37 ? O7N NAD 401 A 1 HETATM 41 N N7N NAD . . . C 2 0.243 4.776 -1.181 1 20.53 ? N7N NAD 401 A 1 HETATM 42 C C4N NAD . . . C 2 -3.018 2.995 -1.725 1 22.89 ? C4N NAD 401 A 1 HETATM 43 C C5N NAD . . . C 2 -3.514 1.795 -2.197 1 22.98 ? C5N NAD 401 A 1 HETATM 44 C C6N NAD . . . C 2 -2.669 0.713 -2.289 1 23.84 ? C6N NAD 401 A 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 11 _model_server_stats.query_time_ms 346 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 44 #