data_6ZLR # _model_server_result.job_id aEQ8vRyKXvfOFvGQzTRPsQ _model_server_result.datetime_utc '2024-11-08 15:52:26' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6zlr # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"J","auth_seq_id":601}' # _entry.id 6ZLR # _exptl.entry_id 6ZLR _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 221.208 _entity.id 4 _entity.src_method man _entity.type non-polymer _entity.pdbx_description 2-acetamido-2-deoxy-beta-D-glucopyranose _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6ZLR _cell.length_a 207.13 _cell.length_b 207.13 _cell.length_c 199.866 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6ZLR _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41 21 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA trimeric 3 author_and_software_defined_assembly 1 PISA trimeric 3 author_and_software_defined_assembly 2 PISA trimeric 3 author_and_software_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,J 1 1 D,E,F,K 2 1 G,H,I,L 3 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 J N N ? 4 K N N ? 4 L N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 18 EEE CYS 336 1_555 A SG CYS 43 EEE CYS 361 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.023 ? disulf ? disulf2 A SG CYS 61 EEE CYS 379 1_555 A SG CYS 114 EEE CYS 432 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.102 ? disulf ? disulf3 A SG CYS 73 EEE CYS 391 1_555 A SG CYS 207 EEE CYS 525 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.048 ? disulf ? disulf4 A SG CYS 162 EEE CYS 480 1_555 A SG CYS 170 EEE CYS 488 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf5 B SG CYS 22 HHH CYS 22 1_555 B SG CYS 96 HHH CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.077 ? disulf ? disulf6 B SG CYS 146 HHH CYS 146 1_555 B SG CYS 202 HHH CYS 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.02 ? disulf ? disulf7 C SG CYS 23 LLL CYS 23 1_555 C SG CYS 94 LLL CYS 94 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.112 ? disulf ? disulf8 C SG CYS 140 LLL CYS 140 1_555 C SG CYS 200 LLL CYS 200 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.013 ? disulf ? disulf9 D SG CYS 18 AAA CYS 336 1_555 D SG CYS 43 AAA CYS 361 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? disulf ? disulf10 D SG CYS 61 AAA CYS 379 1_555 D SG CYS 114 AAA CYS 432 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.077 ? disulf ? disulf11 D SG CYS 73 AAA CYS 391 1_555 D SG CYS 207 AAA CYS 525 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.055 ? disulf ? disulf12 D SG CYS 162 AAA CYS 480 1_555 D SG CYS 170 AAA CYS 488 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.067 ? disulf ? disulf13 E SG CYS 22 BBB CYS 22 1_555 E SG CYS 96 BBB CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.051 ? disulf ? disulf14 E SG CYS 146 BBB CYS 146 1_555 E SG CYS 202 BBB CYS 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.022 ? disulf ? disulf15 F SG CYS 23 CCC CYS 23 1_555 F SG CYS 94 CCC CYS 94 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.112 ? disulf ? disulf16 F SG CYS 140 CCC CYS 140 1_555 F SG CYS 200 CCC CYS 200 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.976 ? disulf ? disulf17 G SG CYS 18 DDD CYS 336 1_555 G SG CYS 43 DDD CYS 361 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? disulf ? disulf18 G SG CYS 61 DDD CYS 379 1_555 G SG CYS 114 DDD CYS 432 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.073 ? disulf ? disulf19 G SG CYS 73 DDD CYS 391 1_555 G SG CYS 207 DDD CYS 525 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.055 ? disulf ? disulf20 G SG CYS 162 DDD CYS 480 1_555 G SG CYS 170 DDD CYS 488 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.065 ? disulf ? disulf21 H SG CYS 22 FFF CYS 22 1_555 H SG CYS 96 FFF CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? disulf ? disulf22 H SG CYS 146 FFF CYS 146 1_555 H SG CYS 202 FFF CYS 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.057 ? disulf ? disulf23 I SG CYS 23 GGG CYS 23 1_555 I SG CYS 94 GGG CYS 94 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.111 ? disulf ? disulf24 I SG CYS 140 GGG CYS 140 1_555 I SG CYS 200 GGG CYS 200 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.013 ? covale ? covale1 A ND2 ASN 25 EEE ASN 343 1_555 J C1 NAG . EEE NAG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.398 ? covale ? covale2 G ND2 ASN 25 DDD ASN 343 1_555 L C1 NAG . DDD NAG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.428 ? # _chem_comp.formula 'C8 H15 N O6' _chem_comp.formula_weight 221.208 _chem_comp.id NAG _chem_comp.mon_nstd_flag . _chem_comp.name 2-acetamido-2-deoxy-beta-D-glucopyranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 NAG sing 235 n n C1 O1 NAG sing 236 n n C1 O5 NAG sing 237 n n C1 H1 NAG sing 238 n n C2 C3 NAG sing 239 n n C2 N2 NAG sing 240 n n C2 H2 NAG sing 241 n n C3 C4 NAG sing 242 n n C3 O3 NAG sing 243 n n C3 H3 NAG sing 244 n n C4 C5 NAG sing 245 n n C4 O4 NAG sing 246 n n C4 H4 NAG sing 247 n n C5 C6 NAG sing 248 n n C5 O5 NAG sing 249 n n C5 H5 NAG sing 250 n n C6 O6 NAG sing 251 n n C6 H61 NAG sing 252 n n C6 H62 NAG sing 253 n n C7 C8 NAG sing 254 n n C7 N2 NAG sing 255 n n C7 O7 NAG doub 256 n n C8 H81 NAG sing 257 n n C8 H82 NAG sing 258 n n C8 H83 NAG sing 259 n n N2 HN2 NAG sing 260 n n O1 HO1 NAG sing 261 n n O3 HO3 NAG sing 262 n n O4 HO4 NAG sing 263 n n O6 HO6 NAG sing 264 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 6ZLR _atom_sites.fract_transf_matrix[1][1] 0.004828 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.004828 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005003 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code J 4 NAG EEE 1 601 907 NAG NAG . K 4 NAG AAA 1 601 907 NAG NAG . L 4 NAG DDD 1 601 907 NAG NAG . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 NAG . . . J 4 6.092 38.957 24.324 1 128.54 ? C1 NAG 601 EEE 1 HETATM 2 C C2 NAG . . . J 4 7.545 38.635 24.068 1 138.5 ? C2 NAG 601 EEE 1 HETATM 3 C C3 NAG . . . J 4 8.033 38.066 25.394 1 129.46 ? C3 NAG 601 EEE 1 HETATM 4 C C4 NAG . . . J 4 7.609 38.972 26.575 1 118.84 ? C4 NAG 601 EEE 1 HETATM 5 C C5 NAG . . . J 4 6.173 39.567 26.489 1 108.17 ? C5 NAG 601 EEE 1 HETATM 6 C C6 NAG . . . J 4 5.99 40.818 27.316 1 97.21 ? C6 NAG 601 EEE 1 HETATM 7 C C7 NAG . . . J 4 8.72 37.704 22.09 1 145.85 ? C7 NAG 601 EEE 1 HETATM 8 C C8 NAG . . . J 4 9.813 38.737 22.211 1 129.89 ? C8 NAG 601 EEE 1 HETATM 9 N N2 NAG . . . J 4 7.719 37.68 22.982 1 155.11 ? N2 NAG 601 EEE 1 HETATM 10 O O3 NAG . . . J 4 9.461 37.914 25.366 1 129.78 ? O3 NAG 601 EEE 1 HETATM 11 O O4 NAG . . . J 4 7.781 38.251 27.816 1 107.49 ? O4 NAG 601 EEE 1 HETATM 12 O O5 NAG . . . J 4 5.849 40.027 25.203 1 112.56 ? O5 NAG 601 EEE 1 HETATM 13 O O6 NAG . . . J 4 4.644 40.888 27.772 1 77.91 ? O6 NAG 601 EEE 1 HETATM 14 O O7 NAG . . . J 4 8.768 36.898 21.161 1 143.59 ? O7 NAG 601 EEE 1 # _model_server_stats.io_time_ms 15 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 17 _model_server_stats.query_time_ms 336 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 14 #