data_6ZMD # _model_server_result.job_id QfvihhYpAn-E3hQVna0IRw _model_server_result.datetime_utc '2025-09-06 15:52:27' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6zmd # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":603}' # _entry.id 6ZMD # _exptl.entry_id 6ZMD _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 24.305 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MAGNESIUM ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6ZMD _cell.length_a 83.466 _cell.length_b 83.466 _cell.length_c 169.482 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6ZMD _symmetry.cell_setting ? _symmetry.Int_Tables_number 76 _symmetry.space_group_name_Hall 'P 4w' _symmetry.space_group_name_H-M 'P 41' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 E N N ? 5 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A OG1 THR 496 A THR 518 1_555 D P1 QMK . A QMK 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.558 ? covale ? covale2 D C1 QMK . A QMK 602 1_555 B SG CYS 303 B CYS 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.766 ? metalc ? metalc1 A OD2 ASP 12 A ASP 34 1_555 E MG MG . A MG 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.234 ? metalc ? metalc2 A O TYR 17 A TYR 39 1_555 E MG MG . A MG 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.077 ? metalc ? metalc3 A OE1 GLU 179 A GLU 201 1_555 F MG MG . A MG 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.097 ? metalc ? metalc4 A OD1 ASP 202 A ASP 224 1_555 F MG MG . A MG 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.182 ? metalc ? metalc5 A OD2 ASP 202 A ASP 224 1_555 F MG MG . A MG 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.155 ? metalc ? metalc6 C O1B ANP . A ANP 601 1_555 E MG MG . A MG 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.422 ? metalc ? metalc7 C O2A ANP . A ANP 601 1_555 E MG MG . A MG 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.75 ? metalc ? metalc8 C O3G ANP . A ANP 601 1_555 F MG MG . A MG 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.515 ? metalc ? metalc9 E MG MG . A MG 603 1_555 I O HOH . A HOH 710 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.081 ? metalc ? metalc10 E MG MG . A MG 603 1_555 I O HOH . A HOH 733 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.087 ? metalc ? metalc11 F MG MG . A MG 604 1_555 I O HOH . A HOH 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.051 ? metalc ? metalc12 F MG MG . A MG 604 1_555 I O HOH . A HOH 716 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.088 ? metalc ? metalc13 F MG MG . A MG 604 1_555 I O HOH . A HOH 721 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.086 ? # _chem_comp.formula 'Mg 2' _chem_comp.formula_weight 24.305 _chem_comp.id MG _chem_comp.mon_nstd_flag . _chem_comp.name 'MAGNESIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 6ZMD _atom_sites.fract_transf_matrix[1][1] 0.011981 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011981 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.0059 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 ANP A 1 601 601 ANP ANP . D 4 QMK A 1 602 602 QMK QMK . E 5 MG A 1 603 603 MG MG . F 5 MG A 1 604 604 MG MG . G 6 PO4 A 1 605 605 PO4 PO4 . H 6 PO4 B 1 501 501 PO4 PO4 . I 7 HOH A 1 701 701 HOH HOH . I 7 HOH A 2 702 704 HOH HOH . I 7 HOH A 3 703 702 HOH HOH . I 7 HOH A 4 704 703 HOH HOH . I 7 HOH A 5 705 706 HOH HOH . I 7 HOH A 6 706 712 HOH HOH . I 7 HOH A 7 707 707 HOH HOH . I 7 HOH A 8 708 708 HOH HOH . I 7 HOH A 9 709 713 HOH HOH . I 7 HOH A 10 710 714 HOH HOH . I 7 HOH A 11 711 710 HOH HOH . I 7 HOH A 12 712 711 HOH HOH . I 7 HOH A 13 713 716 HOH HOH . I 7 HOH A 14 714 720 HOH HOH . I 7 HOH A 15 715 723 HOH HOH . I 7 HOH A 16 716 705 HOH HOH . I 7 HOH A 17 717 718 HOH HOH . I 7 HOH A 18 718 709 HOH HOH . I 7 HOH A 19 719 715 HOH HOH . I 7 HOH A 20 720 717 HOH HOH . I 7 HOH A 21 721 722 HOH HOH . I 7 HOH A 22 722 721 HOH HOH . I 7 HOH A 23 723 727 HOH HOH . I 7 HOH A 24 724 731 HOH HOH . I 7 HOH A 25 725 724 HOH HOH . I 7 HOH A 26 726 719 HOH HOH . I 7 HOH A 27 727 725 HOH HOH . I 7 HOH A 28 728 726 HOH HOH . I 7 HOH A 29 729 729 HOH HOH . I 7 HOH A 30 730 732 HOH HOH . I 7 HOH A 31 731 733 HOH HOH . I 7 HOH A 32 732 730 HOH HOH . I 7 HOH A 33 733 728 HOH HOH . I 7 HOH A 34 734 735 HOH HOH . I 7 HOH A 35 735 734 HOH HOH . I 7 HOH A 36 736 737 HOH HOH . I 7 HOH A 37 737 736 HOH HOH . I 7 HOH A 38 738 738 HOH HOH . I 7 HOH A 39 739 739 HOH HOH . I 7 HOH A 40 740 740 HOH HOH . I 7 HOH A 41 741 741 HOH HOH . I 7 HOH A 42 742 742 HOH HOH . I 7 HOH A 43 743 743 HOH HOH . I 7 HOH A 44 744 744 HOH HOH . I 7 HOH A 45 745 745 HOH HOH . I 7 HOH A 46 746 746 HOH HOH . J 7 HOH B 1 601 601 HOH HOH . J 7 HOH B 2 602 605 HOH HOH . J 7 HOH B 3 603 602 HOH HOH . J 7 HOH B 4 604 604 HOH HOH . J 7 HOH B 5 605 603 HOH HOH . J 7 HOH B 6 606 606 HOH HOH . J 7 HOH B 7 607 609 HOH HOH . J 7 HOH B 8 608 610 HOH HOH . J 7 HOH B 9 609 608 HOH HOH . J 7 HOH B 10 610 614 HOH HOH . J 7 HOH B 11 611 612 HOH HOH . J 7 HOH B 12 612 613 HOH HOH . J 7 HOH B 13 613 611 HOH HOH . J 7 HOH B 14 614 607 HOH HOH . J 7 HOH B 15 615 618 HOH HOH . J 7 HOH B 16 616 616 HOH HOH . J 7 HOH B 17 617 615 HOH HOH . J 7 HOH B 18 618 620 HOH HOH . J 7 HOH B 19 619 619 HOH HOH . J 7 HOH B 20 620 617 HOH HOH . J 7 HOH B 21 621 621 HOH HOH . J 7 HOH B 22 622 622 HOH HOH . J 7 HOH B 23 623 625 HOH HOH . J 7 HOH B 24 624 624 HOH HOH . J 7 HOH B 25 625 623 HOH HOH . J 7 HOH B 26 626 626 HOH HOH . J 7 HOH B 27 627 627 HOH HOH . J 7 HOH B 28 628 628 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MG _atom_site.label_atom_id MG _atom_site.label_comp_id MG _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id E _atom_site.label_entity_id 5 _atom_site.Cartn_x 15.412 _atom_site.Cartn_y 31.072 _atom_site.Cartn_z 2.086 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 44.45 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id MG _atom_site.auth_comp_id MG _atom_site.auth_seq_id 603 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 29 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 329 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 1 #