data_6ZN2 # _model_server_result.job_id trhXng23TdPfZJ_W9Ef0FA _model_server_result.datetime_utc '2025-04-02 04:52:44' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6zn2 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":501}' # _entry.id 6ZN2 # _exptl.entry_id 6ZN2 _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 153.178 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description L-DOPAMINE _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6ZN2 _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 6ZN2 _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details octameric _pdbx_struct_assembly.oligomeric_count 8 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 I N N ? 3 K N N ? 3 M N N ? 3 O N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 168 A HIS 330 1_555 J FE FE . A FE 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.148 ? metalc ? metalc2 A NE2 HIS 173 A HIS 335 1_555 J FE FE . A FE 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.152 ? metalc ? metalc3 A OE1 GLU 213 A GLU 375 1_555 J FE FE . A FE 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.578 ? metalc ? metalc4 A OE2 GLU 213 A GLU 375 1_555 J FE FE . A FE 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.534 ? metalc ? metalc5 I O1 LDP . A LDP 501 1_555 J FE FE . A FE 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.116 ? metalc ? metalc6 I O2 LDP . A LDP 501 1_555 J FE FE . A FE 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.082 ? metalc ? metalc7 C NE2 HIS 168 C HIS 330 1_555 L FE FE . C FE 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.148 ? metalc ? metalc8 C NE2 HIS 173 C HIS 335 1_555 L FE FE . C FE 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.152 ? metalc ? metalc9 C OE1 GLU 213 C GLU 375 1_555 L FE FE . C FE 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.578 ? metalc ? metalc10 C OE2 GLU 213 C GLU 375 1_555 L FE FE . C FE 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.534 ? metalc ? metalc11 K O1 LDP . C LDP 501 1_555 L FE FE . C FE 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.116 ? metalc ? metalc12 K O2 LDP . C LDP 501 1_555 L FE FE . C FE 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.082 ? metalc ? metalc13 E NE2 HIS 168 E HIS 330 1_555 N FE FE . E FE 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.148 ? metalc ? metalc14 E NE2 HIS 173 E HIS 335 1_555 N FE FE . E FE 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.152 ? metalc ? metalc15 E OE1 GLU 213 E GLU 375 1_555 N FE FE . E FE 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.578 ? metalc ? metalc16 E OE2 GLU 213 E GLU 375 1_555 N FE FE . E FE 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.534 ? metalc ? metalc17 M O1 LDP . E LDP 501 1_555 N FE FE . E FE 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.116 ? metalc ? metalc18 M O2 LDP . E LDP 501 1_555 N FE FE . E FE 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.082 ? metalc ? metalc19 G NE2 HIS 168 G HIS 330 1_555 P FE FE . G FE 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.148 ? metalc ? metalc20 G NE2 HIS 173 G HIS 335 1_555 P FE FE . G FE 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.152 ? metalc ? metalc21 G OE1 GLU 213 G GLU 375 1_555 P FE FE . G FE 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.578 ? metalc ? metalc22 G OE2 GLU 213 G GLU 375 1_555 P FE FE . G FE 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.534 ? metalc ? metalc23 O O1 LDP . G LDP 501 1_555 P FE FE . G FE 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.116 ? metalc ? metalc24 O O2 LDP . G LDP 501 1_555 P FE FE . G FE 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.082 ? # _chem_comp.formula 'C8 H11 N O2' _chem_comp.formula_weight 153.178 _chem_comp.id LDP _chem_comp.mon_nstd_flag . _chem_comp.name L-DOPAMINE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms DOPAMINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C7 C1 LDP sing 171 n n C7 C8 LDP sing 172 n n C7 H71 LDP sing 173 n n C7 H72 LDP sing 174 n n C1 C2 LDP doub 175 n y C1 C6 LDP sing 176 n y C4 C5 LDP sing 177 n y C4 C3 LDP doub 178 n y C4 O2 LDP sing 179 n n C2 C3 LDP sing 180 n y C2 H2 LDP sing 181 n n C6 C5 LDP doub 182 n y C6 H6 LDP sing 183 n n C5 H5 LDP sing 184 n n C3 O1 LDP sing 185 n n O1 HO1 LDP sing 186 n n O2 HO2 LDP sing 187 n n C8 N1 LDP sing 188 n n C8 H81 LDP sing 189 n n C8 H82 LDP sing 190 n n N1 HN11 LDP sing 191 n n N1 HN12 LDP sing 192 n n # _atom_sites.entry_id 6ZN2 _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code I 3 LDP A 1 501 599 LDP LDP . J 4 FE A 1 502 699 FE FE . K 3 LDP C 1 501 599 LDP LDP . L 4 FE C 1 502 699 FE FE . M 3 LDP E 1 501 599 LDP LDP . N 4 FE E 1 502 699 FE FE . O 3 LDP G 1 501 599 LDP LDP . P 4 FE G 1 502 699 FE FE . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C7 LDP . . . I 3 117.547 83.655 123.562 1 403.5 ? C7 LDP 501 A 1 HETATM 2 C C1 LDP . . . I 3 117.317 85.16 123.444 1 274.97 ? C1 LDP 501 A 1 HETATM 3 C C4 LDP . . . I 3 116.904 87.89 123.227 1 198.95 ? C4 LDP 501 A 1 HETATM 4 C C2 LDP . . . I 3 118.251 85.951 122.796 1 224.03 ? C2 LDP 501 A 1 HETATM 5 C C6 LDP . . . I 3 116.177 85.733 123.982 1 283.99 ? C6 LDP 501 A 1 HETATM 6 C C5 LDP . . . I 3 115.97 87.098 123.874 1 259.63 ? C5 LDP 501 A 1 HETATM 7 C C3 LDP . . . I 3 118.043 87.316 122.689 1 233.16 ? C3 LDP 501 A 1 HETATM 8 O O1 LDP . . . I 3 118.988 88.115 122.036 1 315.7 ? O1 LDP 501 A 1 HETATM 9 O O2 LDP . . . I 3 116.696 89.271 123.117 1 132.58 ? O2 LDP 501 A 1 HETATM 10 C C8 LDP . . . I 3 116.625 82.919 122.592 1 404.81 ? C8 LDP 501 A 1 HETATM 11 N N1 LDP . . . I 3 115.337 82.693 123.223 1 315.76 ? N1 LDP 501 A 1 # _model_server_stats.io_time_ms 19 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 25 _model_server_stats.query_time_ms 326 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 11 #