data_6ZNQ # _model_server_result.job_id vY4XIjJlvZHbvI9LiGP0fQ _model_server_result.datetime_utc '2024-10-19 11:48:06' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6znq # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":802}' # _entry.id 6ZNQ # _exptl.entry_id 6ZNQ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 192.124 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CITRIC ACID' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6ZNQ _cell.length_a 140.57 _cell.length_b 140.57 _cell.length_c 210.066 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6ZNQ _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall 'P 4abw 2nw' _symmetry.space_group_name_H-M 'P 41 21 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? dimeric 2 author_defined_assembly 1 ? dimeric 2 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,E,F,G 1 1 B,D,H,I 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id F _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A SG CYS 720 A CYS 718 1_555 E ZN ZN . A ZN 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.315 ? metalc ? metalc2 A SG CYS 722 A CYS 720 1_555 E ZN ZN . A ZN 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.226 ? metalc ? metalc3 A SG CYS 726 A CYS 724 1_555 E ZN ZN . A ZN 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.2 ? metalc ? metalc4 A SG CYS 729 A CYS 727 1_555 E ZN ZN . A ZN 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.304 ? metalc ? metalc5 B SG CYS 720 B CYS 718 1_555 H ZN ZN . B ZN 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.545 ? metalc ? metalc6 B SG CYS 722 B CYS 720 1_555 H ZN ZN . B ZN 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.316 ? metalc ? metalc7 B SG CYS 726 B CYS 724 1_555 H ZN ZN . B ZN 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.193 ? metalc ? metalc8 B SG CYS 729 B CYS 727 1_555 H ZN ZN . B ZN 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.477 ? hydrog WATSON-CRICK hydrog1 C N1 DG 10 C DG 1 1_555 D N3 DC 16 D DC 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog2 C N2 DG 10 C DG 1 1_555 D O2 DC 16 D DC 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog3 C O6 DG 10 C DG 1 1_555 D N4 DC 16 D DC 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog4 C N1 DA 11 C DA 2 1_555 D N3 DT 15 D DT 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog5 C N6 DA 11 C DA 2 1_555 D O4 DT 15 D DT 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog6 C N3 DC 12 C DC 3 1_555 D N1 DG 14 D DG 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog7 C N4 DC 12 C DC 3 1_555 D O6 DG 14 D DG 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog8 C O2 DC 12 C DC 3 1_555 D N2 DG 14 D DG 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog 'DC-DC MISPAIR' hydrog9 C N3 DC 13 C DC 4 1_555 D N4 DC 13 D DC 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog10 C N1 DG 14 C DG 5 1_555 D N3 DC 12 D DC 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog11 C N2 DG 14 C DG 5 1_555 D O2 DC 12 D DC 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog12 C O6 DG 14 C DG 5 1_555 D N4 DC 12 D DC 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog13 C N3 DT 15 C DT 6 1_555 D N1 DA 11 D DA 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog14 C O4 DT 15 C DT 6 1_555 D N6 DA 11 D DA 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog 'REVERSED WATSON-CRICK' hydrog15 C N3 DC 16 C DC 7 1_555 D N2 DG 10 D DG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog 'REVERSED WATSON-CRICK' hydrog16 C O2 DC 16 C DC 7 1_555 D N1 DG 10 D DG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? # _chem_comp.formula 'C6 H8 O7' _chem_comp.formula_weight 192.124 _chem_comp.id CIT _chem_comp.mon_nstd_flag . _chem_comp.name 'CITRIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 CIT doub 120 n n C1 O2 CIT sing 121 n n C1 C2 CIT sing 122 n n O2 HO2 CIT sing 123 n n C2 C3 CIT sing 124 n n C2 H21 CIT sing 125 n n C2 H22 CIT sing 126 n n C3 O7 CIT sing 127 n n C3 C4 CIT sing 128 n n C3 C6 CIT sing 129 n n O7 HO7 CIT sing 130 n n C4 C5 CIT sing 131 n n C4 H41 CIT sing 132 n n C4 H42 CIT sing 133 n n C5 O3 CIT doub 134 n n C5 O4 CIT sing 135 n n O4 HO4 CIT sing 136 n n C6 O5 CIT doub 137 n n C6 O6 CIT sing 138 n n O6 HO6 CIT sing 139 n n # _atom_sites.entry_id 6ZNQ _atom_sites.fract_transf_matrix[1][1] 0.007114 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007114 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00476 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 ZN A 1 801 1 ZN ZN . F 4 CIT A 1 802 1 CIT CIT . G 5 ANP A 1 803 1 ANP ANP . H 3 ZN B 1 801 2 ZN ZN . I 5 ANP B 1 802 2 ANP ANP . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 CIT . . . F 4 121.81 136.104 72.356 1 105.71 ? C1 CIT 802 A 1 HETATM 2 O O1 CIT . . . F 4 121.716 135.62 71.205 1 101.03 ? O1 CIT 802 A 1 HETATM 3 O O2 CIT . . . F 4 122.898 136.616 72.705 1 112.13 ? O2 CIT 802 A 1 HETATM 4 C C2 CIT . . . F 4 120.622 136.069 73.298 1 99.58 ? C2 CIT 802 A 1 HETATM 5 C C3 CIT . . . F 4 120.929 136.691 74.662 1 102.84 ? C3 CIT 802 A 1 HETATM 6 O O7 CIT . . . F 4 122.257 136.278 75.077 1 114.08 ? O7 CIT 802 A 1 HETATM 7 C C4 CIT . . . F 4 120.835 138.219 74.721 1 96.56 ? C4 CIT 802 A 1 HETATM 8 C C5 CIT . . . F 4 120.61 138.898 73.386 1 92.96 ? C5 CIT 802 A 1 HETATM 9 O O3 CIT . . . F 4 121.548 139.075 72.577 1 87.98 ? O3 CIT 802 A 1 HETATM 10 O O4 CIT . . . F 4 119.472 139.324 73.086 1 95.25 ? O4 CIT 802 A 1 HETATM 11 C C6 CIT . . . F 4 119.948 136.146 75.689 1 90.55 ? C6 CIT 802 A 1 HETATM 12 O O5 CIT . . . F 4 118.785 136.607 75.755 1 79.09 ? O5 CIT 802 A 1 HETATM 13 O O6 CIT . . . F 4 120.293 135.222 76.46 1 88.71 ? O6 CIT 802 A 1 # _model_server_stats.io_time_ms 21 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 178 _model_server_stats.query_time_ms 398 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 13 #