data_6ZNQ # _model_server_result.job_id hcf7oaH73i_gSarbiQVwAA _model_server_result.datetime_utc '2024-10-19 11:24:52' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6znq # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":802}' # _entry.id 6ZNQ # _exptl.entry_id 6ZNQ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 506.196 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6ZNQ _cell.length_a 140.57 _cell.length_b 140.57 _cell.length_c 210.066 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6ZNQ _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall 'P 4abw 2nw' _symmetry.space_group_name_H-M 'P 41 21 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? dimeric 2 author_defined_assembly 1 ? dimeric 2 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,E,F,G 1 1 B,D,H,I 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 G N N ? 5 I N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A SG CYS 720 A CYS 718 1_555 E ZN ZN . A ZN 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.315 ? metalc ? metalc2 A SG CYS 722 A CYS 720 1_555 E ZN ZN . A ZN 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.226 ? metalc ? metalc3 A SG CYS 726 A CYS 724 1_555 E ZN ZN . A ZN 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.2 ? metalc ? metalc4 A SG CYS 729 A CYS 727 1_555 E ZN ZN . A ZN 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.304 ? metalc ? metalc5 B SG CYS 720 B CYS 718 1_555 H ZN ZN . B ZN 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.545 ? metalc ? metalc6 B SG CYS 722 B CYS 720 1_555 H ZN ZN . B ZN 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.316 ? metalc ? metalc7 B SG CYS 726 B CYS 724 1_555 H ZN ZN . B ZN 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.193 ? metalc ? metalc8 B SG CYS 729 B CYS 727 1_555 H ZN ZN . B ZN 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.477 ? hydrog WATSON-CRICK hydrog1 C N1 DG 10 C DG 1 1_555 D N3 DC 16 D DC 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog2 C N2 DG 10 C DG 1 1_555 D O2 DC 16 D DC 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog3 C O6 DG 10 C DG 1 1_555 D N4 DC 16 D DC 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog4 C N1 DA 11 C DA 2 1_555 D N3 DT 15 D DT 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog5 C N6 DA 11 C DA 2 1_555 D O4 DT 15 D DT 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog6 C N3 DC 12 C DC 3 1_555 D N1 DG 14 D DG 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog7 C N4 DC 12 C DC 3 1_555 D O6 DG 14 D DG 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog8 C O2 DC 12 C DC 3 1_555 D N2 DG 14 D DG 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog 'DC-DC MISPAIR' hydrog9 C N3 DC 13 C DC 4 1_555 D N4 DC 13 D DC 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog10 C N1 DG 14 C DG 5 1_555 D N3 DC 12 D DC 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog11 C N2 DG 14 C DG 5 1_555 D O2 DC 12 D DC 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog12 C O6 DG 14 C DG 5 1_555 D N4 DC 12 D DC 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog13 C N3 DT 15 C DT 6 1_555 D N1 DA 11 D DA 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog14 C O4 DT 15 C DT 6 1_555 D N6 DA 11 D DA 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog 'REVERSED WATSON-CRICK' hydrog15 C N3 DC 16 C DC 7 1_555 D N2 DG 10 D DG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog 'REVERSED WATSON-CRICK' hydrog16 C O2 DC 16 C DC 7 1_555 D N1 DG 10 D DG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? # _chem_comp.formula 'C10 H17 N6 O12 P3' _chem_comp.formula_weight 506.196 _chem_comp.id ANP _chem_comp.mon_nstd_flag . _chem_comp.name 'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ANP doub 13 n n PG O2G ANP sing 14 n n PG O3G ANP sing 15 n n PG N3B ANP sing 16 n n O2G HOG2 ANP sing 17 n n O3G HOG3 ANP sing 18 n n PB O1B ANP doub 19 n n PB O2B ANP sing 20 n n PB N3B ANP sing 21 n n PB O3A ANP sing 22 n n O2B HOB2 ANP sing 23 n n N3B HNB1 ANP sing 24 n n PA O1A ANP doub 25 n n PA O2A ANP sing 26 n n PA O3A ANP sing 27 n n PA O5' ANP sing 28 n n O2A HOA2 ANP sing 29 n n O5' C5' ANP sing 30 n n C5' C4' ANP sing 31 n n C5' "H5'1" ANP sing 32 n n C5' "H5'2" ANP sing 33 n n C4' O4' ANP sing 34 n n C4' C3' ANP sing 35 n n C4' H4' ANP sing 36 n n O4' C1' ANP sing 37 n n C3' O3' ANP sing 38 n n C3' C2' ANP sing 39 n n C3' H3' ANP sing 40 n n O3' HO3' ANP sing 41 n n C2' O2' ANP sing 42 n n C2' C1' ANP sing 43 n n C2' H2' ANP sing 44 n n O2' HO2' ANP sing 45 n n C1' N9 ANP sing 46 n n C1' H1' ANP sing 47 n n N9 C8 ANP sing 48 n y N9 C4 ANP sing 49 n y C8 N7 ANP doub 50 n y C8 H8 ANP sing 51 n n N7 C5 ANP sing 52 n y C5 C6 ANP sing 53 n y C5 C4 ANP doub 54 n y C6 N6 ANP sing 55 n n C6 N1 ANP doub 56 n y N6 HN61 ANP sing 57 n n N6 HN62 ANP sing 58 n n N1 C2 ANP sing 59 n y C2 N3 ANP doub 60 n y C2 H2 ANP sing 61 n n N3 C4 ANP sing 62 n y # _atom_sites.entry_id 6ZNQ _atom_sites.fract_transf_matrix[1][1] 0.007114 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007114 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00476 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 ZN A 1 801 1 ZN ZN . F 4 CIT A 1 802 1 CIT CIT . G 5 ANP A 1 803 1 ANP ANP . H 3 ZN B 1 801 2 ZN ZN . I 5 ANP B 1 802 2 ANP ANP . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ANP . . . I 5 41.843 123.313 83.146 1 131.86 ? PG ANP 802 B 1 HETATM 2 O O1G ANP . . . I 5 41.447 122.845 84.513 1 118.77 ? O1G ANP 802 B 1 HETATM 3 O O2G ANP . . . I 5 42.24 124.842 83.221 1 109.54 ? O2G ANP 802 B 1 HETATM 4 O O3G ANP . . . I 5 40.621 123.13 82.153 1 102.86 ? O3G ANP 802 B 1 HETATM 5 P PB ANP . . . I 5 42.733 120.955 81.872 1 123.77 ? PB ANP 802 B 1 HETATM 6 O O1B ANP . . . I 5 41.474 121.157 81.093 1 109.26 ? O1B ANP 802 B 1 HETATM 7 O O2B ANP . . . I 5 42.48 119.875 82.964 1 120.99 ? O2B ANP 802 B 1 HETATM 8 N N3B ANP . . . I 5 43.177 122.411 82.595 1 127.96 ? N3B ANP 802 B 1 HETATM 9 P PA ANP . . . I 5 44.922 119.327 81.358 1 139.73 ? PA ANP 802 B 1 HETATM 10 O O1A ANP . . . I 5 46.065 119.889 82.12 1 126.41 ? O1A ANP 802 B 1 HETATM 11 O O2A ANP . . . I 5 45.363 118.624 80.068 1 114.86 ? O2A ANP 802 B 1 HETATM 12 O O3A ANP . . . I 5 43.874 120.461 80.918 1 114.97 ? O3A ANP 802 B 1 HETATM 13 O O5' ANP . . . I 5 44.126 118.347 82.332 1 133.21 ? O5' ANP 802 B 1 HETATM 14 C C5' ANP . . . I 5 44.72 117.817 83.545 1 126.56 ? C5' ANP 802 B 1 HETATM 15 C C4' ANP . . . I 5 44.155 116.441 83.792 1 120.57 ? C4' ANP 802 B 1 HETATM 16 O O4' ANP . . . I 5 43.449 116.005 82.62 1 110.2 ? O4' ANP 802 B 1 HETATM 17 C C3' ANP . . . I 5 45.2 115.359 84.048 1 124.4 ? C3' ANP 802 B 1 HETATM 18 O O3' ANP . . . I 5 45.476 115.244 85.439 1 121.35 ? O3' ANP 802 B 1 HETATM 19 C C2' ANP . . . I 5 44.559 114.082 83.469 1 118.47 ? C2' ANP 802 B 1 HETATM 20 O O2' ANP . . . I 5 44.109 113.19 84.484 1 112.43 ? O2' ANP 802 B 1 HETATM 21 C C1' ANP . . . I 5 43.369 114.597 82.647 1 114.37 ? C1' ANP 802 B 1 HETATM 22 N N9 ANP . . . I 5 43.336 114.114 81.269 1 111.91 ? N9 ANP 802 B 1 HETATM 23 C C8 ANP . . . I 5 43.484 114.859 80.13 1 106.08 ? C8 ANP 802 B 1 HETATM 24 N N7 ANP . . . I 5 43.404 114.161 79.02 1 100.26 ? N7 ANP 802 B 1 HETATM 25 C C5 ANP . . . I 5 43.191 112.868 79.466 1 112.26 ? C5 ANP 802 B 1 HETATM 26 C C6 ANP . . . I 5 43.014 111.644 78.781 1 109.92 ? C6 ANP 802 B 1 HETATM 27 N N6 ANP . . . I 5 43.031 111.529 77.451 1 104.24 ? N6 ANP 802 B 1 HETATM 28 N N1 ANP . . . I 5 42.821 110.531 79.525 1 104.43 ? N1 ANP 802 B 1 HETATM 29 C C2 ANP . . . I 5 42.804 110.641 80.856 1 110.14 ? C2 ANP 802 B 1 HETATM 30 N N3 ANP . . . I 5 42.954 111.735 81.61 1 116.5 ? N3 ANP 802 B 1 HETATM 31 C C4 ANP . . . I 5 43.143 112.817 80.849 1 115.96 ? C4 ANP 802 B 1 # _model_server_stats.io_time_ms 0 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 25 _model_server_stats.query_time_ms 306 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 31 #