data_6ZNQ # _model_server_result.job_id PXvNRc7OtdxEF3tuQWyyHw _model_server_result.datetime_utc '2024-10-19 11:46:15' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6znq # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":803}' # _entry.id 6ZNQ # _exptl.entry_id 6ZNQ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 506.196 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6ZNQ _cell.length_a 140.57 _cell.length_b 140.57 _cell.length_c 210.066 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6ZNQ _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall 'P 4abw 2nw' _symmetry.space_group_name_H-M 'P 41 21 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? dimeric 2 author_defined_assembly 1 ? dimeric 2 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,E,F,G 1 1 B,D,H,I 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 G N N ? 5 I N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A SG CYS 720 A CYS 718 1_555 E ZN ZN . A ZN 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.315 ? metalc ? metalc2 A SG CYS 722 A CYS 720 1_555 E ZN ZN . A ZN 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.226 ? metalc ? metalc3 A SG CYS 726 A CYS 724 1_555 E ZN ZN . A ZN 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.2 ? metalc ? metalc4 A SG CYS 729 A CYS 727 1_555 E ZN ZN . A ZN 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.304 ? metalc ? metalc5 B SG CYS 720 B CYS 718 1_555 H ZN ZN . B ZN 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.545 ? metalc ? metalc6 B SG CYS 722 B CYS 720 1_555 H ZN ZN . B ZN 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.316 ? metalc ? metalc7 B SG CYS 726 B CYS 724 1_555 H ZN ZN . B ZN 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.193 ? metalc ? metalc8 B SG CYS 729 B CYS 727 1_555 H ZN ZN . B ZN 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.477 ? hydrog WATSON-CRICK hydrog1 C N1 DG 10 C DG 1 1_555 D N3 DC 16 D DC 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog2 C N2 DG 10 C DG 1 1_555 D O2 DC 16 D DC 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog3 C O6 DG 10 C DG 1 1_555 D N4 DC 16 D DC 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog4 C N1 DA 11 C DA 2 1_555 D N3 DT 15 D DT 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog5 C N6 DA 11 C DA 2 1_555 D O4 DT 15 D DT 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog6 C N3 DC 12 C DC 3 1_555 D N1 DG 14 D DG 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog7 C N4 DC 12 C DC 3 1_555 D O6 DG 14 D DG 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog8 C O2 DC 12 C DC 3 1_555 D N2 DG 14 D DG 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog 'DC-DC MISPAIR' hydrog9 C N3 DC 13 C DC 4 1_555 D N4 DC 13 D DC 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog10 C N1 DG 14 C DG 5 1_555 D N3 DC 12 D DC 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog11 C N2 DG 14 C DG 5 1_555 D O2 DC 12 D DC 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog12 C O6 DG 14 C DG 5 1_555 D N4 DC 12 D DC 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog13 C N3 DT 15 C DT 6 1_555 D N1 DA 11 D DA 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog14 C O4 DT 15 C DT 6 1_555 D N6 DA 11 D DA 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog 'REVERSED WATSON-CRICK' hydrog15 C N3 DC 16 C DC 7 1_555 D N2 DG 10 D DG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog 'REVERSED WATSON-CRICK' hydrog16 C O2 DC 16 C DC 7 1_555 D N1 DG 10 D DG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? # _chem_comp.formula 'C10 H17 N6 O12 P3' _chem_comp.formula_weight 506.196 _chem_comp.id ANP _chem_comp.mon_nstd_flag . _chem_comp.name 'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ANP doub 13 n n PG O2G ANP sing 14 n n PG O3G ANP sing 15 n n PG N3B ANP sing 16 n n O2G HOG2 ANP sing 17 n n O3G HOG3 ANP sing 18 n n PB O1B ANP doub 19 n n PB O2B ANP sing 20 n n PB N3B ANP sing 21 n n PB O3A ANP sing 22 n n O2B HOB2 ANP sing 23 n n N3B HNB1 ANP sing 24 n n PA O1A ANP doub 25 n n PA O2A ANP sing 26 n n PA O3A ANP sing 27 n n PA O5' ANP sing 28 n n O2A HOA2 ANP sing 29 n n O5' C5' ANP sing 30 n n C5' C4' ANP sing 31 n n C5' "H5'1" ANP sing 32 n n C5' "H5'2" ANP sing 33 n n C4' O4' ANP sing 34 n n C4' C3' ANP sing 35 n n C4' H4' ANP sing 36 n n O4' C1' ANP sing 37 n n C3' O3' ANP sing 38 n n C3' C2' ANP sing 39 n n C3' H3' ANP sing 40 n n O3' HO3' ANP sing 41 n n C2' O2' ANP sing 42 n n C2' C1' ANP sing 43 n n C2' H2' ANP sing 44 n n O2' HO2' ANP sing 45 n n C1' N9 ANP sing 46 n n C1' H1' ANP sing 47 n n N9 C8 ANP sing 48 n y N9 C4 ANP sing 49 n y C8 N7 ANP doub 50 n y C8 H8 ANP sing 51 n n N7 C5 ANP sing 52 n y C5 C6 ANP sing 53 n y C5 C4 ANP doub 54 n y C6 N6 ANP sing 55 n n C6 N1 ANP doub 56 n y N6 HN61 ANP sing 57 n n N6 HN62 ANP sing 58 n n N1 C2 ANP sing 59 n y C2 N3 ANP doub 60 n y C2 H2 ANP sing 61 n n N3 C4 ANP sing 62 n y # _atom_sites.entry_id 6ZNQ _atom_sites.fract_transf_matrix[1][1] 0.007114 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007114 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00476 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 ZN A 1 801 1 ZN ZN . F 4 CIT A 1 802 1 CIT CIT . G 5 ANP A 1 803 1 ANP ANP . H 3 ZN B 1 801 2 ZN ZN . I 5 ANP B 1 802 2 ANP ANP . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ANP . . . G 5 100.643 122.841 71.245 1 137.44 ? PG ANP 803 A 1 HETATM 2 O O1G ANP . . . G 5 100.463 122.098 69.956 1 112.85 ? O1G ANP 803 A 1 HETATM 3 O O2G ANP . . . G 5 100.124 124.321 71.055 1 109.29 ? O2G ANP 803 A 1 HETATM 4 O O3G ANP . . . G 5 102.181 122.884 71.631 1 118.5 ? O3G ANP 803 A 1 HETATM 5 P PB ANP . . . G 5 100.142 120.452 72.616 1 111.53 ? PB ANP 803 A 1 HETATM 6 O O1B ANP . . . G 5 101.622 120.336 72.804 1 97.74 ? O1B ANP 803 A 1 HETATM 7 O O2B ANP . . . G 5 99.693 119.732 71.31 1 117.65 ? O2B ANP 803 A 1 HETATM 8 N N3B ANP . . . G 5 99.754 122.083 72.484 1 117.23 ? N3B ANP 803 A 1 HETATM 9 P PA ANP . . . G 5 98.022 119.024 73.75 1 121.45 ? PA ANP 803 A 1 HETATM 10 O O1A ANP . . . G 5 97.037 119.755 72.916 1 108.94 ? O1A ANP 803 A 1 HETATM 11 O O2A ANP . . . G 5 97.534 118.876 75.197 1 97.17 ? O2A ANP 803 A 1 HETATM 12 O O3A ANP . . . G 5 99.422 119.8 73.845 1 104.46 ? O3A ANP 803 A 1 HETATM 13 O O5' ANP . . . G 5 98.297 117.6 73.065 1 118.59 ? O5' ANP 803 A 1 HETATM 14 C C5' ANP . . . G 5 97.467 117.164 71.961 1 118.47 ? C5' ANP 803 A 1 HETATM 15 C C4' ANP . . . G 5 97.434 115.657 71.838 1 116.91 ? C4' ANP 803 A 1 HETATM 16 O O4' ANP . . . G 5 98.017 115.039 73 1 115.78 ? O4' ANP 803 A 1 HETATM 17 C C3' ANP . . . G 5 96.035 115.045 71.69 1 125.06 ? C3' ANP 803 A 1 HETATM 18 O O3' ANP . . . G 5 95.787 114.65 70.345 1 128.37 ? O3' ANP 803 A 1 HETATM 19 C C2' ANP . . . G 5 96.035 113.847 72.661 1 121.04 ? C2' ANP 803 A 1 HETATM 20 O O2' ANP . . . G 5 95.589 112.644 72.043 1 120.45 ? O2' ANP 803 A 1 HETATM 21 C C1' ANP . . . G 5 97.506 113.727 73.055 1 121.47 ? C1' ANP 803 A 1 HETATM 22 N N9 ANP . . . G 5 97.736 113.175 74.389 1 117.2 ? N9 ANP 803 A 1 HETATM 23 C C8 ANP . . . G 5 97.977 113.866 75.547 1 110.84 ? C8 ANP 803 A 1 HETATM 24 N N7 ANP . . . G 5 98.152 113.101 76.6 1 101.05 ? N7 ANP 803 A 1 HETATM 25 C C5 ANP . . . G 5 98.012 111.816 76.097 1 105.81 ? C5 ANP 803 A 1 HETATM 26 C C6 ANP . . . G 5 98.086 110.546 76.706 1 102.22 ? C6 ANP 803 A 1 HETATM 27 N N6 ANP . . . G 5 98.33 110.359 78.005 1 92.37 ? N6 ANP 803 A 1 HETATM 28 N N1 ANP . . . G 5 97.903 109.461 75.918 1 100.62 ? N1 ANP 803 A 1 HETATM 29 C C2 ANP . . . G 5 97.662 109.644 74.616 1 102.74 ? C2 ANP 803 A 1 HETATM 30 N N3 ANP . . . G 5 97.569 110.789 73.934 1 107.93 ? N3 ANP 803 A 1 HETATM 31 C C4 ANP . . . G 5 97.758 111.844 74.736 1 110.71 ? C4 ANP 803 A 1 # _model_server_stats.io_time_ms 19 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 21 _model_server_stats.query_time_ms 282 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 31 #