data_6ZNX
#
_model_server_result.job_id            Ohp_MzUfypMBOhUsI8LRQw 
_model_server_result.datetime_utc      '2024-11-24 01:27:28' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6znx 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"H","auth_seq_id":401}' 
#
_entry.id    6ZNX 
#
_exptl.entry_id    6ZNX 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              427.201 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "ADENOSINE-5'-DIPHOSPHATE" 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          98.2 
_cell.angle_gamma         90 
_cell.entry_id            6ZNX 
_cell.length_a            44.21 
_cell.length_b            155.55 
_cell.length_c            83.04 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6ZNX 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA dimeric 2 author_and_software_defined_assembly 1 
PISA dimeric 2 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,E,I 1 1 
D,H,L 1 3 
B,F,J 2 1 
C,G,K 2 2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 1_455 x-1,y,z 1 0 0 0 1 0 0 0 1 -44.21 0 0 
3 'crystal symmetry operation' 2_556 -x,y+1/2,-z+1 -1 0 0 0 1 0 0 0 -1 -11.843907 77.775 82.191018 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 E N N 
? 2 F N N 
? 2 G N N 
? 2 H N N 
#
_chem_comp.formula           'C10 H15 N5 O10 P2' 
_chem_comp.formula_weight    427.201 
_chem_comp.id                ADP 
_chem_comp.mon_nstd_flag     n 
_chem_comp.name              "ADENOSINE-5'-DIPHOSPHATE" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PB O1B ADP doub 1 n n 
PB O2B ADP sing 2 n n 
PB O3B ADP sing 3 n n 
PB O3A ADP sing 4 n n 
O2B HOB2 ADP sing 5 n n 
O3B HOB3 ADP sing 6 n n 
PA O1A ADP doub 7 n n 
PA O2A ADP sing 8 n n 
PA O3A ADP sing 9 n n 
PA O5' ADP sing 10 n n 
O2A HOA2 ADP sing 11 n n 
O5' C5' ADP sing 12 n n 
C5' C4' ADP sing 13 n n 
C5' "H5'1" ADP sing 14 n n 
C5' "H5'2" ADP sing 15 n n 
C4' O4' ADP sing 16 n n 
C4' C3' ADP sing 17 n n 
C4' H4' ADP sing 18 n n 
O4' C1' ADP sing 19 n n 
C3' O3' ADP sing 20 n n 
C3' C2' ADP sing 21 n n 
C3' H3' ADP sing 22 n n 
O3' HO3' ADP sing 23 n n 
C2' O2' ADP sing 24 n n 
C2' C1' ADP sing 25 n n 
C2' H2' ADP sing 26 n n 
O2' HO2' ADP sing 27 n n 
C1' N9 ADP sing 28 n n 
C1' H1' ADP sing 29 n n 
N9 C8 ADP sing 30 n y 
N9 C4 ADP sing 31 n y 
C8 N7 ADP doub 32 n y 
C8 H8 ADP sing 33 n n 
N7 C5 ADP sing 34 n y 
C5 C6 ADP sing 35 n y 
C5 C4 ADP doub 36 n y 
C6 N6 ADP sing 37 n n 
C6 N1 ADP doub 38 n y 
N6 HN61 ADP sing 39 n n 
N6 HN62 ADP sing 40 n n 
N1 C2 ADP sing 41 n y 
C2 N3 ADP doub 42 n y 
C2 H2 ADP sing 43 n n 
N3 C4 ADP sing 44 n y 
#
_atom_sites.entry_id                     6ZNX 
_atom_sites.fract_transf_matrix[1][1]    0.022619 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.003259 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.006429 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.012167 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 ADP A 1 401 401 ADP ADP . 
F 2 ADP B 1 401 401 ADP ADP . 
G 2 ADP C 1 401 401 ADP ADP . 
H 2 ADP D 1 401 401 ADP ADP . 
I 3 HOH A 1 501 170 HOH HOH . 
I 3 HOH A 2 502 173 HOH HOH . 
I 3 HOH A 3 503 38 HOH HOH . 
I 3 HOH A 4 504 90 HOH HOH . 
I 3 HOH A 5 505 41 HOH HOH . 
I 3 HOH A 6 506 134 HOH HOH . 
I 3 HOH A 7 507 139 HOH HOH . 
I 3 HOH A 8 508 43 HOH HOH . 
I 3 HOH A 9 509 30 HOH HOH . 
I 3 HOH A 10 510 98 HOH HOH . 
I 3 HOH A 11 511 172 HOH HOH . 
I 3 HOH A 12 512 187 HOH HOH . 
I 3 HOH A 13 513 192 HOH HOH . 
I 3 HOH A 14 514 108 HOH HOH . 
I 3 HOH A 15 515 193 HOH HOH . 
I 3 HOH A 16 516 29 HOH HOH . 
I 3 HOH A 17 517 124 HOH HOH . 
I 3 HOH A 18 518 39 HOH HOH . 
I 3 HOH A 19 519 111 HOH HOH . 
I 3 HOH A 20 520 3 HOH HOH . 
I 3 HOH A 21 521 123 HOH HOH . 
I 3 HOH A 22 522 66 HOH HOH . 
I 3 HOH A 23 523 109 HOH HOH . 
I 3 HOH A 24 524 129 HOH HOH . 
I 3 HOH A 25 525 190 HOH HOH . 
I 3 HOH A 26 526 45 HOH HOH . 
I 3 HOH A 27 527 68 HOH HOH . 
I 3 HOH A 28 528 80 HOH HOH . 
I 3 HOH A 29 529 159 HOH HOH . 
I 3 HOH A 30 530 17 HOH HOH . 
I 3 HOH A 31 531 191 HOH HOH . 
I 3 HOH A 32 532 76 HOH HOH . 
I 3 HOH A 33 533 143 HOH HOH . 
I 3 HOH A 34 534 203 HOH HOH . 
I 3 HOH A 35 535 67 HOH HOH . 
I 3 HOH A 36 536 9 HOH HOH . 
I 3 HOH A 37 537 37 HOH HOH . 
I 3 HOH A 38 538 64 HOH HOH . 
I 3 HOH A 39 539 102 HOH HOH . 
I 3 HOH A 40 540 197 HOH HOH . 
I 3 HOH A 41 541 97 HOH HOH . 
I 3 HOH A 42 542 126 HOH HOH . 
I 3 HOH A 43 543 6 HOH HOH . 
I 3 HOH A 44 544 34 HOH HOH . 
I 3 HOH A 45 545 169 HOH HOH . 
I 3 HOH A 46 546 71 HOH HOH . 
I 3 HOH A 47 547 195 HOH HOH . 
I 3 HOH A 48 548 18 HOH HOH . 
I 3 HOH A 49 549 47 HOH HOH . 
I 3 HOH A 50 550 11 HOH HOH . 
I 3 HOH A 51 551 127 HOH HOH . 
J 3 HOH B 1 501 122 HOH HOH . 
J 3 HOH B 2 502 77 HOH HOH . 
J 3 HOH B 3 503 15 HOH HOH . 
J 3 HOH B 4 504 177 HOH HOH . 
J 3 HOH B 5 505 125 HOH HOH . 
J 3 HOH B 6 506 153 HOH HOH . 
J 3 HOH B 7 507 117 HOH HOH . 
J 3 HOH B 8 508 19 HOH HOH . 
J 3 HOH B 9 509 154 HOH HOH . 
J 3 HOH B 10 510 152 HOH HOH . 
J 3 HOH B 11 511 118 HOH HOH . 
J 3 HOH B 12 512 70 HOH HOH . 
J 3 HOH B 13 513 113 HOH HOH . 
J 3 HOH B 14 514 132 HOH HOH . 
J 3 HOH B 15 515 49 HOH HOH . 
J 3 HOH B 16 516 14 HOH HOH . 
J 3 HOH B 17 517 33 HOH HOH . 
J 3 HOH B 18 518 212 HOH HOH . 
J 3 HOH B 19 519 200 HOH HOH . 
J 3 HOH B 20 520 106 HOH HOH . 
J 3 HOH B 21 521 209 HOH HOH . 
J 3 HOH B 22 522 55 HOH HOH . 
J 3 HOH B 23 523 196 HOH HOH . 
J 3 HOH B 24 524 181 HOH HOH . 
J 3 HOH B 25 525 157 HOH HOH . 
J 3 HOH B 26 526 35 HOH HOH . 
J 3 HOH B 27 527 32 HOH HOH . 
J 3 HOH B 28 528 79 HOH HOH . 
J 3 HOH B 29 529 54 HOH HOH . 
J 3 HOH B 30 530 162 HOH HOH . 
J 3 HOH B 31 531 27 HOH HOH . 
J 3 HOH B 32 532 60 HOH HOH . 
J 3 HOH B 33 533 50 HOH HOH . 
J 3 HOH B 34 534 74 HOH HOH . 
J 3 HOH B 35 535 135 HOH HOH . 
J 3 HOH B 36 536 25 HOH HOH . 
J 3 HOH B 37 537 105 HOH HOH . 
J 3 HOH B 38 538 147 HOH HOH . 
J 3 HOH B 39 539 204 HOH HOH . 
J 3 HOH B 40 540 36 HOH HOH . 
J 3 HOH B 41 541 194 HOH HOH . 
J 3 HOH B 42 542 163 HOH HOH . 
J 3 HOH B 43 543 168 HOH HOH . 
J 3 HOH B 44 544 166 HOH HOH . 
J 3 HOH B 45 545 5 HOH HOH . 
J 3 HOH B 46 546 16 HOH HOH . 
J 3 HOH B 47 547 142 HOH HOH . 
J 3 HOH B 48 548 78 HOH HOH . 
J 3 HOH B 49 549 23 HOH HOH . 
J 3 HOH B 50 550 91 HOH HOH . 
J 3 HOH B 51 551 89 HOH HOH . 
J 3 HOH B 52 552 121 HOH HOH . 
J 3 HOH B 53 553 189 HOH HOH . 
J 3 HOH B 54 554 202 HOH HOH . 
J 3 HOH B 55 555 210 HOH HOH . 
K 3 HOH C 1 501 138 HOH HOH . 
K 3 HOH C 2 502 88 HOH HOH . 
K 3 HOH C 3 503 207 HOH HOH . 
K 3 HOH C 4 504 59 HOH HOH . 
K 3 HOH C 5 505 186 HOH HOH . 
K 3 HOH C 6 506 199 HOH HOH . 
K 3 HOH C 7 507 101 HOH HOH . 
K 3 HOH C 8 508 28 HOH HOH . 
K 3 HOH C 9 509 4 HOH HOH . 
K 3 HOH C 10 510 52 HOH HOH . 
K 3 HOH C 11 511 211 HOH HOH . 
K 3 HOH C 12 512 180 HOH HOH . 
K 3 HOH C 13 513 119 HOH HOH . 
K 3 HOH C 14 514 164 HOH HOH . 
K 3 HOH C 15 515 120 HOH HOH . 
K 3 HOH C 16 516 58 HOH HOH . 
K 3 HOH C 17 517 42 HOH HOH . 
K 3 HOH C 18 518 155 HOH HOH . 
K 3 HOH C 19 519 133 HOH HOH . 
K 3 HOH C 20 520 184 HOH HOH . 
K 3 HOH C 21 521 213 HOH HOH . 
K 3 HOH C 22 522 26 HOH HOH . 
K 3 HOH C 23 523 61 HOH HOH . 
K 3 HOH C 24 524 115 HOH HOH . 
K 3 HOH C 25 525 93 HOH HOH . 
K 3 HOH C 26 526 104 HOH HOH . 
K 3 HOH C 27 527 73 HOH HOH . 
K 3 HOH C 28 528 63 HOH HOH . 
K 3 HOH C 29 529 174 HOH HOH . 
K 3 HOH C 30 530 112 HOH HOH . 
K 3 HOH C 31 531 140 HOH HOH . 
K 3 HOH C 32 532 144 HOH HOH . 
K 3 HOH C 33 533 24 HOH HOH . 
K 3 HOH C 34 534 114 HOH HOH . 
K 3 HOH C 35 535 75 HOH HOH . 
K 3 HOH C 36 536 31 HOH HOH . 
K 3 HOH C 37 537 95 HOH HOH . 
K 3 HOH C 38 538 130 HOH HOH . 
K 3 HOH C 39 539 92 HOH HOH . 
K 3 HOH C 40 540 83 HOH HOH . 
K 3 HOH C 41 541 7 HOH HOH . 
K 3 HOH C 42 542 103 HOH HOH . 
L 3 HOH D 1 501 51 HOH HOH . 
L 3 HOH D 2 502 81 HOH HOH . 
L 3 HOH D 3 503 156 HOH HOH . 
L 3 HOH D 4 504 141 HOH HOH . 
L 3 HOH D 5 505 85 HOH HOH . 
L 3 HOH D 6 506 171 HOH HOH . 
L 3 HOH D 7 507 84 HOH HOH . 
L 3 HOH D 8 508 131 HOH HOH . 
L 3 HOH D 9 509 46 HOH HOH . 
L 3 HOH D 10 510 128 HOH HOH . 
L 3 HOH D 11 511 185 HOH HOH . 
L 3 HOH D 12 512 110 HOH HOH . 
L 3 HOH D 13 513 107 HOH HOH . 
L 3 HOH D 14 514 208 HOH HOH . 
L 3 HOH D 15 515 182 HOH HOH . 
L 3 HOH D 16 516 69 HOH HOH . 
L 3 HOH D 17 517 94 HOH HOH . 
L 3 HOH D 18 518 148 HOH HOH . 
L 3 HOH D 19 519 48 HOH HOH . 
L 3 HOH D 20 520 65 HOH HOH . 
L 3 HOH D 21 521 44 HOH HOH . 
L 3 HOH D 22 522 12 HOH HOH . 
L 3 HOH D 23 523 8 HOH HOH . 
L 3 HOH D 24 524 87 HOH HOH . 
L 3 HOH D 25 525 40 HOH HOH . 
L 3 HOH D 26 526 136 HOH HOH . 
L 3 HOH D 27 527 137 HOH HOH . 
L 3 HOH D 28 528 145 HOH HOH . 
L 3 HOH D 29 529 183 HOH HOH . 
L 3 HOH D 30 530 62 HOH HOH . 
L 3 HOH D 31 531 167 HOH HOH . 
L 3 HOH D 32 532 57 HOH HOH . 
L 3 HOH D 33 533 20 HOH HOH . 
L 3 HOH D 34 534 72 HOH HOH . 
L 3 HOH D 35 535 151 HOH HOH . 
L 3 HOH D 36 536 100 HOH HOH . 
L 3 HOH D 37 537 82 HOH HOH . 
L 3 HOH D 38 538 165 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PB ADP . . . H 2 -2.594 -38.404 55.503 1 55.41 ? PB ADP 401 D 1 
HETATM 2 O O1B ADP . . . H 2 -2.51 -37.714 54.145 1 53 ? O1B ADP 401 D 1 
HETATM 3 O O2B ADP . . . H 2 -4.013 -38.478 56.061 1 50.94 ? O2B ADP 401 D 1 
HETATM 4 O O3B ADP . . . H 2 -1.877 -39.731 55.517 1 52.12 ? O3B ADP 401 D 1 
HETATM 5 P PA ADP . . . H 2 -2.17 -36.698 57.872 1 46.62 ? PA ADP 401 D 1 
HETATM 6 O O1A ADP . . . H 2 -0.993 -35.866 58.259 1 54.26 ? O1A ADP 401 D 1 
HETATM 7 O O2A ADP . . . H 2 -2.729 -37.689 58.835 1 49.5 ? O2A ADP 401 D 1 
HETATM 8 O O3A ADP . . . H 2 -1.781 -37.475 56.53 1 51.59 ? O3A ADP 401 D 1 
HETATM 9 O O5' ADP . . . H 2 -3.326 -35.729 57.36 1 48.66 ? O5' ADP 401 D 1 
HETATM 10 C C5' ADP . . . H 2 -4.351 -35.531 58.323 1 46.85 ? C5' ADP 401 D 1 
HETATM 11 C C4' ADP . . . H 2 -4.949 -34.16 58.171 1 44.02 ? C4' ADP 401 D 1 
HETATM 12 O O4' ADP . . . H 2 -6.166 -34.111 58.953 1 42.74 ? O4' ADP 401 D 1 
HETATM 13 C C3' ADP . . . H 2 -4.094 -32.986 58.668 1 44.27 ? C3' ADP 401 D 1 
HETATM 14 O O3' ADP . . . H 2 -2.714 -33.311 58.784 1 45.81 ? O3' ADP 401 D 1 
HETATM 15 C C2' ADP . . . H 2 -4.688 -32.622 60.035 1 43.25 ? C2' ADP 401 D 1 
HETATM 16 O O2' ADP . . . H 2 -5.094 -31.271 60.025 1 40.3 ? O2' ADP 401 D 1 
HETATM 17 C C1' ADP . . . H 2 -5.91 -33.53 60.21 1 42.43 ? C1' ADP 401 D 1 
HETATM 18 N N9 ADP . . . H 2 -5.793 -34.584 61.231 1 41.67 ? N9 ADP 401 D 1 
HETATM 19 C C8 ADP . . . H 2 -5.452 -35.905 61.046 1 40.74 ? C8 ADP 401 D 1 
HETATM 20 N N7 ADP . . . H 2 -5.458 -36.622 62.141 1 38.85 ? N7 ADP 401 D 1 
HETATM 21 C C5 ADP . . . H 2 -5.823 -35.722 63.128 1 41.47 ? C5 ADP 401 D 1 
HETATM 22 C C6 ADP . . . H 2 -5.997 -35.879 64.518 1 40.48 ? C6 ADP 401 D 1 
HETATM 23 N N6 ADP . . . H 2 -5.835 -37.041 65.149 1 38.8 ? N6 ADP 401 D 1 
HETATM 24 N N1 ADP . . . H 2 -6.346 -34.778 65.229 1 39.03 ? N1 ADP 401 D 1 
HETATM 25 C C2 ADP . . . H 2 -6.513 -33.622 64.569 1 40.22 ? C2 ADP 401 D 1 
HETATM 26 N N3 ADP . . . H 2 -6.387 -33.361 63.267 1 37.76 ? N3 ADP 401 D 1 
HETATM 27 C C4 ADP . . . H 2 -6.037 -34.465 62.584 1 40 ? C4 ADP 401 D 1 
#
_model_server_stats.io_time_ms              23 
_model_server_stats.parse_time_ms           13 
_model_server_stats.create_model_time_ms    9 
_model_server_stats.query_time_ms           433 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           27 
#