data_6ZO9 # _model_server_result.job_id XHT5ItR5FzzJ1xuxx9SdSg _model_server_result.datetime_utc '2024-11-05 08:23:00' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6zo9 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"CA","auth_seq_id":1105}' # _entry.id 6ZO9 # _exptl.entry_id 6ZO9 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 170.335 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description DODECANE _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6ZO9 _cell.length_a 147.165 _cell.length_b 160.519 _cell.length_c 244.078 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6ZO9 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details pentameric _pdbx_struct_assembly.oligomeric_count 5 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 F N N ? 3 BA N N ? 3 CA N N # _chem_comp.formula 'C12 H26' _chem_comp.formula_weight 170.335 _chem_comp.id D12 _chem_comp.mon_nstd_flag . _chem_comp.name DODECANE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 D12 sing 157 n n C1 H11 D12 sing 158 n n C1 H12 D12 sing 159 n n C1 H13 D12 sing 160 n n C2 C3 D12 sing 161 n n C2 H21 D12 sing 162 n n C2 H22 D12 sing 163 n n C3 C4 D12 sing 164 n n C3 H31 D12 sing 165 n n C3 H32 D12 sing 166 n n C4 C5 D12 sing 167 n n C4 H41 D12 sing 168 n n C4 H42 D12 sing 169 n n C5 C6 D12 sing 170 n n C5 H51 D12 sing 171 n n C5 H52 D12 sing 172 n n C6 C7 D12 sing 173 n n C6 H61 D12 sing 174 n n C6 H62 D12 sing 175 n n C7 C8 D12 sing 176 n n C7 H71 D12 sing 177 n n C7 H72 D12 sing 178 n n C8 C9 D12 sing 179 n n C8 H81 D12 sing 180 n n C8 H82 D12 sing 181 n n C9 C10 D12 sing 182 n n C9 H91 D12 sing 183 n n C9 H92 D12 sing 184 n n C10 C11 D12 sing 185 n n C10 H101 D12 sing 186 n n C10 H102 D12 sing 187 n n C11 C12 D12 sing 188 n n C11 H111 D12 sing 189 n n C11 H112 D12 sing 190 n n C12 H121 D12 sing 191 n n C12 H122 D12 sing 192 n n C12 H123 D12 sing 193 n n # _atom_sites.entry_id 6ZO9 _atom_sites.fract_transf_matrix[1][1] 0.006795 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.00623 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004097 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code F 3 D12 A 1 1101 2 D12 D12 . G 4 LMT A 1 1102 2 LMT LMT . H 4 LMT A 1 1103 5 LMT LMT . I 4 LMT A 1 1104 7 LMT LMT . J 5 PTY A 1 1105 4 PTY PTY . K 6 GOL A 1 1106 4 GOL GOL . L 7 EDO A 1 1107 2 EDO EDO . M 4 LMT B 1 1101 4 LMT LMT . N 8 DDR B 1 1102 1 DDR DDR . O 9 HEX B 1 1103 2 HEX HEX . P 10 OCT B 1 1104 1 OCT OCT . Q 10 OCT B 1 1105 3 OCT OCT . R 6 GOL B 1 1106 3 GOL GOL . S 11 SO4 B 1 1107 2 SO4 SO4 . T 7 EDO B 1 1108 1 EDO EDO . U 7 EDO B 1 1109 3 EDO EDO . V 7 EDO B 1 1110 4 EDO EDO . W 12 RBT B 1 1111 1101 RBT RBT . X 12 RBT B 1 1112 1201 RBT RBT . Y 13 C14 C 1 1101 1 C14 C14 . Z 14 D10 C 1 1102 1 D10 D10 . AA 14 D10 C 1 1103 2 D10 D10 . BA 3 D12 C 1 1104 1 D12 D12 . CA 3 D12 C 1 1105 3 D12 D12 . DA 4 LMT C 1 1106 6 LMT LMT . EA 4 LMT C 1 1107 8 LMT LMT . FA 5 PTY C 1 1108 2 PTY PTY . GA 5 PTY C 1 1109 3 PTY PTY . HA 9 HEX C 1 1110 1 HEX HEX . IA 10 OCT C 1 1111 2 OCT OCT . JA 6 GOL C 1 1112 1 GOL GOL . KA 11 SO4 C 1 1113 1 SO4 SO4 . LA 15 CL C 1 1114 1 CL CL . MA 16 HOH A 1 1201 148 HOH HOH . MA 16 HOH A 2 1202 156 HOH HOH . MA 16 HOH A 3 1203 21 HOH HOH . MA 16 HOH A 4 1204 97 HOH HOH . MA 16 HOH A 5 1205 221 HOH HOH . MA 16 HOH A 6 1206 219 HOH HOH . MA 16 HOH A 7 1207 150 HOH HOH . MA 16 HOH A 8 1208 153 HOH HOH . MA 16 HOH A 9 1209 15 HOH HOH . MA 16 HOH A 10 1210 96 HOH HOH . MA 16 HOH A 11 1211 29 HOH HOH . MA 16 HOH A 12 1212 155 HOH HOH . MA 16 HOH A 13 1213 157 HOH HOH . MA 16 HOH A 14 1214 210 HOH HOH . MA 16 HOH A 15 1215 220 HOH HOH . MA 16 HOH A 16 1216 141 HOH HOH . MA 16 HOH A 17 1217 63 HOH HOH . MA 16 HOH A 18 1218 187 HOH HOH . MA 16 HOH A 19 1219 211 HOH HOH . MA 16 HOH A 20 1220 128 HOH HOH . MA 16 HOH A 21 1221 7 HOH HOH . MA 16 HOH A 22 1222 8 HOH HOH . MA 16 HOH A 23 1223 123 HOH HOH . MA 16 HOH A 24 1224 37 HOH HOH . MA 16 HOH A 25 1225 100 HOH HOH . MA 16 HOH A 26 1226 217 HOH HOH . MA 16 HOH A 27 1227 33 HOH HOH . MA 16 HOH A 28 1228 14 HOH HOH . MA 16 HOH A 29 1229 117 HOH HOH . MA 16 HOH A 30 1230 43 HOH HOH . MA 16 HOH A 31 1231 66 HOH HOH . MA 16 HOH A 32 1232 140 HOH HOH . MA 16 HOH A 33 1233 212 HOH HOH . MA 16 HOH A 34 1234 32 HOH HOH . MA 16 HOH A 35 1235 44 HOH HOH . MA 16 HOH A 36 1236 223 HOH HOH . MA 16 HOH A 37 1237 20 HOH HOH . MA 16 HOH A 38 1238 139 HOH HOH . MA 16 HOH A 39 1239 107 HOH HOH . MA 16 HOH A 40 1240 134 HOH HOH . MA 16 HOH A 41 1241 151 HOH HOH . MA 16 HOH A 42 1242 26 HOH HOH . MA 16 HOH A 43 1243 95 HOH HOH . MA 16 HOH A 44 1244 12 HOH HOH . MA 16 HOH A 45 1245 170 HOH HOH . MA 16 HOH A 46 1246 135 HOH HOH . MA 16 HOH A 47 1247 137 HOH HOH . MA 16 HOH A 48 1248 222 HOH HOH . MA 16 HOH A 49 1249 215 HOH HOH . MA 16 HOH A 50 1250 213 HOH HOH . MA 16 HOH A 51 1251 186 HOH HOH . MA 16 HOH A 52 1252 6 HOH HOH . MA 16 HOH A 53 1253 39 HOH HOH . MA 16 HOH A 54 1254 214 HOH HOH . MA 16 HOH A 55 1255 114 HOH HOH . MA 16 HOH A 56 1256 218 HOH HOH . MA 16 HOH A 57 1257 146 HOH HOH . MA 16 HOH A 58 1258 112 HOH HOH . MA 16 HOH A 59 1259 105 HOH HOH . MA 16 HOH A 60 1260 125 HOH HOH . MA 16 HOH A 61 1261 118 HOH HOH . MA 16 HOH A 62 1262 126 HOH HOH . MA 16 HOH A 63 1263 88 HOH HOH . MA 16 HOH A 64 1264 224 HOH HOH . MA 16 HOH A 65 1265 98 HOH HOH . MA 16 HOH A 66 1266 147 HOH HOH . MA 16 HOH A 67 1267 138 HOH HOH . MA 16 HOH A 68 1268 86 HOH HOH . MA 16 HOH A 69 1269 77 HOH HOH . MA 16 HOH A 70 1270 42 HOH HOH . MA 16 HOH A 71 1271 99 HOH HOH . MA 16 HOH A 72 1272 143 HOH HOH . MA 16 HOH A 73 1273 87 HOH HOH . MA 16 HOH A 74 1274 93 HOH HOH . MA 16 HOH A 75 1275 76 HOH HOH . MA 16 HOH A 76 1276 84 HOH HOH . NA 16 HOH B 1 1201 71 HOH HOH . NA 16 HOH B 2 1202 69 HOH HOH . NA 16 HOH B 3 1203 149 HOH HOH . NA 16 HOH B 4 1204 121 HOH HOH . NA 16 HOH B 5 1205 164 HOH HOH . NA 16 HOH B 6 1206 27 HOH HOH . NA 16 HOH B 7 1207 70 HOH HOH . NA 16 HOH B 8 1208 167 HOH HOH . NA 16 HOH B 9 1209 50 HOH HOH . NA 16 HOH B 10 1210 231 HOH HOH . NA 16 HOH B 11 1211 158 HOH HOH . NA 16 HOH B 12 1212 41 HOH HOH . NA 16 HOH B 13 1213 145 HOH HOH . NA 16 HOH B 14 1214 74 HOH HOH . NA 16 HOH B 15 1215 159 HOH HOH . NA 16 HOH B 16 1216 113 HOH HOH . NA 16 HOH B 17 1217 228 HOH HOH . NA 16 HOH B 18 1218 226 HOH HOH . NA 16 HOH B 19 1219 17 HOH HOH . NA 16 HOH B 20 1220 122 HOH HOH . NA 16 HOH B 21 1221 115 HOH HOH . NA 16 HOH B 22 1222 116 HOH HOH . NA 16 HOH B 23 1223 60 HOH HOH . NA 16 HOH B 24 1224 13 HOH HOH . NA 16 HOH B 25 1225 68 HOH HOH . NA 16 HOH B 26 1226 34 HOH HOH . NA 16 HOH B 27 1227 229 HOH HOH . NA 16 HOH B 28 1228 185 HOH HOH . NA 16 HOH B 29 1229 160 HOH HOH . NA 16 HOH B 30 1230 2 HOH HOH . NA 16 HOH B 31 1231 10 HOH HOH . NA 16 HOH B 32 1232 91 HOH HOH . NA 16 HOH B 33 1233 62 HOH HOH . NA 16 HOH B 34 1234 172 HOH HOH . NA 16 HOH B 35 1235 216 HOH HOH . NA 16 HOH B 36 1236 174 HOH HOH . NA 16 HOH B 37 1237 65 HOH HOH . NA 16 HOH B 38 1238 67 HOH HOH . NA 16 HOH B 39 1239 227 HOH HOH . NA 16 HOH B 40 1240 120 HOH HOH . NA 16 HOH B 41 1241 73 HOH HOH . NA 16 HOH B 42 1242 233 HOH HOH . NA 16 HOH B 43 1243 169 HOH HOH . NA 16 HOH B 44 1244 72 HOH HOH . NA 16 HOH B 45 1245 161 HOH HOH . NA 16 HOH B 46 1246 45 HOH HOH . NA 16 HOH B 47 1247 162 HOH HOH . NA 16 HOH B 48 1248 173 HOH HOH . NA 16 HOH B 49 1249 168 HOH HOH . NA 16 HOH B 50 1250 175 HOH HOH . NA 16 HOH B 51 1251 171 HOH HOH . NA 16 HOH B 52 1252 78 HOH HOH . NA 16 HOH B 53 1253 230 HOH HOH . NA 16 HOH B 54 1254 154 HOH HOH . OA 16 HOH C 1 1201 75 HOH HOH . OA 16 HOH C 2 1202 200 HOH HOH . OA 16 HOH C 3 1203 83 HOH HOH . OA 16 HOH C 4 1204 176 HOH HOH . OA 16 HOH C 5 1205 18 HOH HOH . OA 16 HOH C 6 1206 129 HOH HOH . OA 16 HOH C 7 1207 40 HOH HOH . OA 16 HOH C 8 1208 206 HOH HOH . OA 16 HOH C 9 1209 81 HOH HOH . OA 16 HOH C 10 1210 204 HOH HOH . OA 16 HOH C 11 1211 19 HOH HOH . OA 16 HOH C 12 1212 80 HOH HOH . OA 16 HOH C 13 1213 89 HOH HOH . OA 16 HOH C 14 1214 110 HOH HOH . OA 16 HOH C 15 1215 31 HOH HOH . OA 16 HOH C 16 1216 201 HOH HOH . OA 16 HOH C 17 1217 61 HOH HOH . OA 16 HOH C 18 1218 203 HOH HOH . OA 16 HOH C 19 1219 9 HOH HOH . OA 16 HOH C 20 1220 132 HOH HOH . OA 16 HOH C 21 1221 189 HOH HOH . OA 16 HOH C 22 1222 28 HOH HOH . OA 16 HOH C 23 1223 205 HOH HOH . OA 16 HOH C 24 1224 38 HOH HOH . OA 16 HOH C 25 1225 23 HOH HOH . OA 16 HOH C 26 1226 111 HOH HOH . OA 16 HOH C 27 1227 94 HOH HOH . OA 16 HOH C 28 1228 36 HOH HOH . OA 16 HOH C 29 1229 184 HOH HOH . OA 16 HOH C 30 1230 180 HOH HOH . OA 16 HOH C 31 1231 24 HOH HOH . OA 16 HOH C 32 1232 59 HOH HOH . OA 16 HOH C 33 1233 199 HOH HOH . OA 16 HOH C 34 1234 193 HOH HOH . OA 16 HOH C 35 1235 188 HOH HOH . OA 16 HOH C 36 1236 30 HOH HOH . OA 16 HOH C 37 1237 16 HOH HOH . OA 16 HOH C 38 1238 22 HOH HOH . OA 16 HOH C 39 1239 4 HOH HOH . OA 16 HOH C 40 1240 181 HOH HOH . OA 16 HOH C 41 1241 57 HOH HOH . OA 16 HOH C 42 1242 35 HOH HOH . OA 16 HOH C 43 1243 106 HOH HOH . OA 16 HOH C 44 1244 5 HOH HOH . OA 16 HOH C 45 1245 190 HOH HOH . OA 16 HOH C 46 1246 225 HOH HOH . OA 16 HOH C 47 1247 192 HOH HOH . OA 16 HOH C 48 1248 53 HOH HOH . OA 16 HOH C 49 1249 90 HOH HOH . OA 16 HOH C 50 1250 195 HOH HOH . OA 16 HOH C 51 1251 52 HOH HOH . OA 16 HOH C 52 1252 82 HOH HOH . OA 16 HOH C 53 1253 191 HOH HOH . OA 16 HOH C 54 1254 79 HOH HOH . OA 16 HOH C 55 1255 46 HOH HOH . OA 16 HOH C 56 1256 64 HOH HOH . OA 16 HOH C 57 1257 58 HOH HOH . OA 16 HOH C 58 1258 25 HOH HOH . OA 16 HOH C 59 1259 194 HOH HOH . OA 16 HOH C 60 1260 130 HOH HOH . OA 16 HOH C 61 1261 196 HOH HOH . OA 16 HOH C 62 1262 136 HOH HOH . OA 16 HOH C 63 1263 198 HOH HOH . OA 16 HOH C 64 1264 49 HOH HOH . OA 16 HOH C 65 1265 202 HOH HOH . OA 16 HOH C 66 1266 92 HOH HOH . OA 16 HOH C 67 1267 232 HOH HOH . OA 16 HOH C 68 1268 131 HOH HOH . OA 16 HOH C 69 1269 48 HOH HOH . OA 16 HOH C 70 1270 47 HOH HOH . OA 16 HOH C 71 1271 133 HOH HOH . OA 16 HOH C 72 1272 109 HOH HOH . OA 16 HOH C 73 1273 51 HOH HOH . OA 16 HOH C 74 1274 163 HOH HOH . OA 16 HOH C 75 1275 183 HOH HOH . OA 16 HOH C 76 1276 179 HOH HOH . OA 16 HOH C 77 1277 182 HOH HOH . OA 16 HOH C 78 1278 177 HOH HOH . OA 16 HOH C 79 1279 197 HOH HOH . OA 16 HOH C 80 1280 85 HOH HOH . OA 16 HOH C 81 1281 56 HOH HOH . OA 16 HOH C 82 1282 108 HOH HOH . OA 16 HOH C 83 1283 55 HOH HOH . OA 16 HOH C 84 1284 127 HOH HOH . OA 16 HOH C 85 1285 54 HOH HOH . OA 16 HOH C 86 1286 178 HOH HOH . PA 16 HOH D 1 201 207 HOH HOH . PA 16 HOH D 2 202 165 HOH HOH . PA 16 HOH D 3 203 166 HOH HOH . PA 16 HOH D 4 204 124 HOH HOH . PA 16 HOH D 5 205 119 HOH HOH . QA 16 HOH E 1 201 142 HOH HOH . QA 16 HOH E 2 202 11 HOH HOH . QA 16 HOH E 3 203 208 HOH HOH . QA 16 HOH E 4 204 101 HOH HOH . QA 16 HOH E 5 205 104 HOH HOH . QA 16 HOH E 6 206 3 HOH HOH . QA 16 HOH E 7 207 102 HOH HOH . QA 16 HOH E 8 208 209 HOH HOH . QA 16 HOH E 9 209 103 HOH HOH . QA 16 HOH E 10 210 144 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 D12 . . . CA 3 45.729 17.695 -55.302 1 76.01 ? C1 D12 1105 C 1 HETATM 2 C C2 D12 . . . CA 3 46.871 16.717 -55.445 1 76.37 ? C2 D12 1105 C 1 HETATM 3 C C3 D12 . . . CA 3 46.458 15.377 -56.001 1 76.44 ? C3 D12 1105 C 1 HETATM 4 C C4 D12 . . . CA 3 45.932 14.407 -54.969 1 76.41 ? C4 D12 1105 C 1 HETATM 5 C C5 D12 . . . CA 3 47.003 13.604 -54.269 1 75.92 ? C5 D12 1105 C 1 HETATM 6 C C6 D12 . . . CA 3 46.611 13.105 -52.899 1 75.58 ? C6 D12 1105 C 1 HETATM 7 C C7 D12 . . . CA 3 47.684 12.299 -52.208 1 75.13 ? C7 D12 1105 C 1 HETATM 8 C C8 D12 . . . CA 3 47.205 11.517 -51.008 1 74.79 ? C8 D12 1105 C 1 HETATM 9 C C9 D12 . . . CA 3 48.312 10.831 -50.243 1 74.57 ? C9 D12 1105 C 1 HETATM 10 C C10 D12 . . . CA 3 47.841 9.853 -49.192 1 74.09 ? C10 D12 1105 C 1 HETATM 11 C C11 D12 . . . CA 3 48.821 8.74 -48.9 1 73.45 ? C11 D12 1105 C 1 HETATM 12 C C12 D12 . . . CA 3 48.677 8.117 -47.53 1 72.91 ? C12 D12 1105 C 1 # _model_server_stats.io_time_ms 20 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 53 _model_server_stats.query_time_ms 270 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 12 #