data_6ZO9
#
_model_server_result.job_id            1f7QkePyn-S9gqvhWujipA 
_model_server_result.datetime_utc      '2024-11-23 14:43:58' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6zo9 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"V","auth_seq_id":1110}' 
#
_entry.id    6ZO9 
#
_exptl.entry_id    6ZO9 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              62.068 
_entity.id                          7 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            1,2-ETHANEDIOL 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            6ZO9 
_cell.length_a            147.165 
_cell.length_b            160.519 
_cell.length_c            244.078 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6ZO9 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    pentameric 
_pdbx_struct_assembly.oligomeric_count      5 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 7 L N N 
? 7 T N N 
? 7 U N N 
? 7 V N N 
#
_chem_comp.formula           'C2 H6 O2' 
_chem_comp.formula_weight    62.068 
_chem_comp.id                EDO 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              1,2-ETHANEDIOL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'ETHYLENE GLYCOL' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 EDO sing 265 n n 
C1 C2 EDO sing 266 n n 
C1 H11 EDO sing 267 n n 
C1 H12 EDO sing 268 n n 
O1 HO1 EDO sing 269 n n 
C2 O2 EDO sing 270 n n 
C2 H21 EDO sing 271 n n 
C2 H22 EDO sing 272 n n 
O2 HO2 EDO sing 273 n n 
#
_atom_sites.entry_id                     6ZO9 
_atom_sites.fract_transf_matrix[1][1]    0.006795 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.00623 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.004097 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
F 3 D12 A 1 1101 2 D12 D12 . 
G 4 LMT A 1 1102 2 LMT LMT . 
H 4 LMT A 1 1103 5 LMT LMT . 
I 4 LMT A 1 1104 7 LMT LMT . 
J 5 PTY A 1 1105 4 PTY PTY . 
K 6 GOL A 1 1106 4 GOL GOL . 
L 7 EDO A 1 1107 2 EDO EDO . 
M 4 LMT B 1 1101 4 LMT LMT . 
N 8 DDR B 1 1102 1 DDR DDR . 
O 9 HEX B 1 1103 2 HEX HEX . 
P 10 OCT B 1 1104 1 OCT OCT . 
Q 10 OCT B 1 1105 3 OCT OCT . 
R 6 GOL B 1 1106 3 GOL GOL . 
S 11 SO4 B 1 1107 2 SO4 SO4 . 
T 7 EDO B 1 1108 1 EDO EDO . 
U 7 EDO B 1 1109 3 EDO EDO . 
V 7 EDO B 1 1110 4 EDO EDO . 
W 12 RBT B 1 1111 1101 RBT RBT . 
X 12 RBT B 1 1112 1201 RBT RBT . 
Y 13 C14 C 1 1101 1 C14 C14 . 
Z 14 D10 C 1 1102 1 D10 D10 . 
AA 14 D10 C 1 1103 2 D10 D10 . 
BA 3 D12 C 1 1104 1 D12 D12 . 
CA 3 D12 C 1 1105 3 D12 D12 . 
DA 4 LMT C 1 1106 6 LMT LMT . 
EA 4 LMT C 1 1107 8 LMT LMT . 
FA 5 PTY C 1 1108 2 PTY PTY . 
GA 5 PTY C 1 1109 3 PTY PTY . 
HA 9 HEX C 1 1110 1 HEX HEX . 
IA 10 OCT C 1 1111 2 OCT OCT . 
JA 6 GOL C 1 1112 1 GOL GOL . 
KA 11 SO4 C 1 1113 1 SO4 SO4 . 
LA 15 CL C 1 1114 1 CL CL . 
MA 16 HOH A 1 1201 148 HOH HOH . 
MA 16 HOH A 2 1202 156 HOH HOH . 
MA 16 HOH A 3 1203 21 HOH HOH . 
MA 16 HOH A 4 1204 97 HOH HOH . 
MA 16 HOH A 5 1205 221 HOH HOH . 
MA 16 HOH A 6 1206 219 HOH HOH . 
MA 16 HOH A 7 1207 150 HOH HOH . 
MA 16 HOH A 8 1208 153 HOH HOH . 
MA 16 HOH A 9 1209 15 HOH HOH . 
MA 16 HOH A 10 1210 96 HOH HOH . 
MA 16 HOH A 11 1211 29 HOH HOH . 
MA 16 HOH A 12 1212 155 HOH HOH . 
MA 16 HOH A 13 1213 157 HOH HOH . 
MA 16 HOH A 14 1214 210 HOH HOH . 
MA 16 HOH A 15 1215 220 HOH HOH . 
MA 16 HOH A 16 1216 141 HOH HOH . 
MA 16 HOH A 17 1217 63 HOH HOH . 
MA 16 HOH A 18 1218 187 HOH HOH . 
MA 16 HOH A 19 1219 211 HOH HOH . 
MA 16 HOH A 20 1220 128 HOH HOH . 
MA 16 HOH A 21 1221 7 HOH HOH . 
MA 16 HOH A 22 1222 8 HOH HOH . 
MA 16 HOH A 23 1223 123 HOH HOH . 
MA 16 HOH A 24 1224 37 HOH HOH . 
MA 16 HOH A 25 1225 100 HOH HOH . 
MA 16 HOH A 26 1226 217 HOH HOH . 
MA 16 HOH A 27 1227 33 HOH HOH . 
MA 16 HOH A 28 1228 14 HOH HOH . 
MA 16 HOH A 29 1229 117 HOH HOH . 
MA 16 HOH A 30 1230 43 HOH HOH . 
MA 16 HOH A 31 1231 66 HOH HOH . 
MA 16 HOH A 32 1232 140 HOH HOH . 
MA 16 HOH A 33 1233 212 HOH HOH . 
MA 16 HOH A 34 1234 32 HOH HOH . 
MA 16 HOH A 35 1235 44 HOH HOH . 
MA 16 HOH A 36 1236 223 HOH HOH . 
MA 16 HOH A 37 1237 20 HOH HOH . 
MA 16 HOH A 38 1238 139 HOH HOH . 
MA 16 HOH A 39 1239 107 HOH HOH . 
MA 16 HOH A 40 1240 134 HOH HOH . 
MA 16 HOH A 41 1241 151 HOH HOH . 
MA 16 HOH A 42 1242 26 HOH HOH . 
MA 16 HOH A 43 1243 95 HOH HOH . 
MA 16 HOH A 44 1244 12 HOH HOH . 
MA 16 HOH A 45 1245 170 HOH HOH . 
MA 16 HOH A 46 1246 135 HOH HOH . 
MA 16 HOH A 47 1247 137 HOH HOH . 
MA 16 HOH A 48 1248 222 HOH HOH . 
MA 16 HOH A 49 1249 215 HOH HOH . 
MA 16 HOH A 50 1250 213 HOH HOH . 
MA 16 HOH A 51 1251 186 HOH HOH . 
MA 16 HOH A 52 1252 6 HOH HOH . 
MA 16 HOH A 53 1253 39 HOH HOH . 
MA 16 HOH A 54 1254 214 HOH HOH . 
MA 16 HOH A 55 1255 114 HOH HOH . 
MA 16 HOH A 56 1256 218 HOH HOH . 
MA 16 HOH A 57 1257 146 HOH HOH . 
MA 16 HOH A 58 1258 112 HOH HOH . 
MA 16 HOH A 59 1259 105 HOH HOH . 
MA 16 HOH A 60 1260 125 HOH HOH . 
MA 16 HOH A 61 1261 118 HOH HOH . 
MA 16 HOH A 62 1262 126 HOH HOH . 
MA 16 HOH A 63 1263 88 HOH HOH . 
MA 16 HOH A 64 1264 224 HOH HOH . 
MA 16 HOH A 65 1265 98 HOH HOH . 
MA 16 HOH A 66 1266 147 HOH HOH . 
MA 16 HOH A 67 1267 138 HOH HOH . 
MA 16 HOH A 68 1268 86 HOH HOH . 
MA 16 HOH A 69 1269 77 HOH HOH . 
MA 16 HOH A 70 1270 42 HOH HOH . 
MA 16 HOH A 71 1271 99 HOH HOH . 
MA 16 HOH A 72 1272 143 HOH HOH . 
MA 16 HOH A 73 1273 87 HOH HOH . 
MA 16 HOH A 74 1274 93 HOH HOH . 
MA 16 HOH A 75 1275 76 HOH HOH . 
MA 16 HOH A 76 1276 84 HOH HOH . 
NA 16 HOH B 1 1201 71 HOH HOH . 
NA 16 HOH B 2 1202 69 HOH HOH . 
NA 16 HOH B 3 1203 149 HOH HOH . 
NA 16 HOH B 4 1204 121 HOH HOH . 
NA 16 HOH B 5 1205 164 HOH HOH . 
NA 16 HOH B 6 1206 27 HOH HOH . 
NA 16 HOH B 7 1207 70 HOH HOH . 
NA 16 HOH B 8 1208 167 HOH HOH . 
NA 16 HOH B 9 1209 50 HOH HOH . 
NA 16 HOH B 10 1210 231 HOH HOH . 
NA 16 HOH B 11 1211 158 HOH HOH . 
NA 16 HOH B 12 1212 41 HOH HOH . 
NA 16 HOH B 13 1213 145 HOH HOH . 
NA 16 HOH B 14 1214 74 HOH HOH . 
NA 16 HOH B 15 1215 159 HOH HOH . 
NA 16 HOH B 16 1216 113 HOH HOH . 
NA 16 HOH B 17 1217 228 HOH HOH . 
NA 16 HOH B 18 1218 226 HOH HOH . 
NA 16 HOH B 19 1219 17 HOH HOH . 
NA 16 HOH B 20 1220 122 HOH HOH . 
NA 16 HOH B 21 1221 115 HOH HOH . 
NA 16 HOH B 22 1222 116 HOH HOH . 
NA 16 HOH B 23 1223 60 HOH HOH . 
NA 16 HOH B 24 1224 13 HOH HOH . 
NA 16 HOH B 25 1225 68 HOH HOH . 
NA 16 HOH B 26 1226 34 HOH HOH . 
NA 16 HOH B 27 1227 229 HOH HOH . 
NA 16 HOH B 28 1228 185 HOH HOH . 
NA 16 HOH B 29 1229 160 HOH HOH . 
NA 16 HOH B 30 1230 2 HOH HOH . 
NA 16 HOH B 31 1231 10 HOH HOH . 
NA 16 HOH B 32 1232 91 HOH HOH . 
NA 16 HOH B 33 1233 62 HOH HOH . 
NA 16 HOH B 34 1234 172 HOH HOH . 
NA 16 HOH B 35 1235 216 HOH HOH . 
NA 16 HOH B 36 1236 174 HOH HOH . 
NA 16 HOH B 37 1237 65 HOH HOH . 
NA 16 HOH B 38 1238 67 HOH HOH . 
NA 16 HOH B 39 1239 227 HOH HOH . 
NA 16 HOH B 40 1240 120 HOH HOH . 
NA 16 HOH B 41 1241 73 HOH HOH . 
NA 16 HOH B 42 1242 233 HOH HOH . 
NA 16 HOH B 43 1243 169 HOH HOH . 
NA 16 HOH B 44 1244 72 HOH HOH . 
NA 16 HOH B 45 1245 161 HOH HOH . 
NA 16 HOH B 46 1246 45 HOH HOH . 
NA 16 HOH B 47 1247 162 HOH HOH . 
NA 16 HOH B 48 1248 173 HOH HOH . 
NA 16 HOH B 49 1249 168 HOH HOH . 
NA 16 HOH B 50 1250 175 HOH HOH . 
NA 16 HOH B 51 1251 171 HOH HOH . 
NA 16 HOH B 52 1252 78 HOH HOH . 
NA 16 HOH B 53 1253 230 HOH HOH . 
NA 16 HOH B 54 1254 154 HOH HOH . 
OA 16 HOH C 1 1201 75 HOH HOH . 
OA 16 HOH C 2 1202 200 HOH HOH . 
OA 16 HOH C 3 1203 83 HOH HOH . 
OA 16 HOH C 4 1204 176 HOH HOH . 
OA 16 HOH C 5 1205 18 HOH HOH . 
OA 16 HOH C 6 1206 129 HOH HOH . 
OA 16 HOH C 7 1207 40 HOH HOH . 
OA 16 HOH C 8 1208 206 HOH HOH . 
OA 16 HOH C 9 1209 81 HOH HOH . 
OA 16 HOH C 10 1210 204 HOH HOH . 
OA 16 HOH C 11 1211 19 HOH HOH . 
OA 16 HOH C 12 1212 80 HOH HOH . 
OA 16 HOH C 13 1213 89 HOH HOH . 
OA 16 HOH C 14 1214 110 HOH HOH . 
OA 16 HOH C 15 1215 31 HOH HOH . 
OA 16 HOH C 16 1216 201 HOH HOH . 
OA 16 HOH C 17 1217 61 HOH HOH . 
OA 16 HOH C 18 1218 203 HOH HOH . 
OA 16 HOH C 19 1219 9 HOH HOH . 
OA 16 HOH C 20 1220 132 HOH HOH . 
OA 16 HOH C 21 1221 189 HOH HOH . 
OA 16 HOH C 22 1222 28 HOH HOH . 
OA 16 HOH C 23 1223 205 HOH HOH . 
OA 16 HOH C 24 1224 38 HOH HOH . 
OA 16 HOH C 25 1225 23 HOH HOH . 
OA 16 HOH C 26 1226 111 HOH HOH . 
OA 16 HOH C 27 1227 94 HOH HOH . 
OA 16 HOH C 28 1228 36 HOH HOH . 
OA 16 HOH C 29 1229 184 HOH HOH . 
OA 16 HOH C 30 1230 180 HOH HOH . 
OA 16 HOH C 31 1231 24 HOH HOH . 
OA 16 HOH C 32 1232 59 HOH HOH . 
OA 16 HOH C 33 1233 199 HOH HOH . 
OA 16 HOH C 34 1234 193 HOH HOH . 
OA 16 HOH C 35 1235 188 HOH HOH . 
OA 16 HOH C 36 1236 30 HOH HOH . 
OA 16 HOH C 37 1237 16 HOH HOH . 
OA 16 HOH C 38 1238 22 HOH HOH . 
OA 16 HOH C 39 1239 4 HOH HOH . 
OA 16 HOH C 40 1240 181 HOH HOH . 
OA 16 HOH C 41 1241 57 HOH HOH . 
OA 16 HOH C 42 1242 35 HOH HOH . 
OA 16 HOH C 43 1243 106 HOH HOH . 
OA 16 HOH C 44 1244 5 HOH HOH . 
OA 16 HOH C 45 1245 190 HOH HOH . 
OA 16 HOH C 46 1246 225 HOH HOH . 
OA 16 HOH C 47 1247 192 HOH HOH . 
OA 16 HOH C 48 1248 53 HOH HOH . 
OA 16 HOH C 49 1249 90 HOH HOH . 
OA 16 HOH C 50 1250 195 HOH HOH . 
OA 16 HOH C 51 1251 52 HOH HOH . 
OA 16 HOH C 52 1252 82 HOH HOH . 
OA 16 HOH C 53 1253 191 HOH HOH . 
OA 16 HOH C 54 1254 79 HOH HOH . 
OA 16 HOH C 55 1255 46 HOH HOH . 
OA 16 HOH C 56 1256 64 HOH HOH . 
OA 16 HOH C 57 1257 58 HOH HOH . 
OA 16 HOH C 58 1258 25 HOH HOH . 
OA 16 HOH C 59 1259 194 HOH HOH . 
OA 16 HOH C 60 1260 130 HOH HOH . 
OA 16 HOH C 61 1261 196 HOH HOH . 
OA 16 HOH C 62 1262 136 HOH HOH . 
OA 16 HOH C 63 1263 198 HOH HOH . 
OA 16 HOH C 64 1264 49 HOH HOH . 
OA 16 HOH C 65 1265 202 HOH HOH . 
OA 16 HOH C 66 1266 92 HOH HOH . 
OA 16 HOH C 67 1267 232 HOH HOH . 
OA 16 HOH C 68 1268 131 HOH HOH . 
OA 16 HOH C 69 1269 48 HOH HOH . 
OA 16 HOH C 70 1270 47 HOH HOH . 
OA 16 HOH C 71 1271 133 HOH HOH . 
OA 16 HOH C 72 1272 109 HOH HOH . 
OA 16 HOH C 73 1273 51 HOH HOH . 
OA 16 HOH C 74 1274 163 HOH HOH . 
OA 16 HOH C 75 1275 183 HOH HOH . 
OA 16 HOH C 76 1276 179 HOH HOH . 
OA 16 HOH C 77 1277 182 HOH HOH . 
OA 16 HOH C 78 1278 177 HOH HOH . 
OA 16 HOH C 79 1279 197 HOH HOH . 
OA 16 HOH C 80 1280 85 HOH HOH . 
OA 16 HOH C 81 1281 56 HOH HOH . 
OA 16 HOH C 82 1282 108 HOH HOH . 
OA 16 HOH C 83 1283 55 HOH HOH . 
OA 16 HOH C 84 1284 127 HOH HOH . 
OA 16 HOH C 85 1285 54 HOH HOH . 
OA 16 HOH C 86 1286 178 HOH HOH . 
PA 16 HOH D 1 201 207 HOH HOH . 
PA 16 HOH D 2 202 165 HOH HOH . 
PA 16 HOH D 3 203 166 HOH HOH . 
PA 16 HOH D 4 204 124 HOH HOH . 
PA 16 HOH D 5 205 119 HOH HOH . 
QA 16 HOH E 1 201 142 HOH HOH . 
QA 16 HOH E 2 202 11 HOH HOH . 
QA 16 HOH E 3 203 208 HOH HOH . 
QA 16 HOH E 4 204 101 HOH HOH . 
QA 16 HOH E 5 205 104 HOH HOH . 
QA 16 HOH E 6 206 3 HOH HOH . 
QA 16 HOH E 7 207 102 HOH HOH . 
QA 16 HOH E 8 208 209 HOH HOH . 
QA 16 HOH E 9 209 103 HOH HOH . 
QA 16 HOH E 10 210 144 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 EDO . . . V 7 4.86 -43.559 -19.49 1 85.33 ? C1 EDO 1110 B 1 
HETATM 2 O O1 EDO . . . V 7 4.86 -44.936 -19.167 1 85.5 ? O1 EDO 1110 B 1 
HETATM 3 C C2 EDO . . . V 7 4.856 -43.304 -20.953 1 85.11 ? C2 EDO 1110 B 1 
HETATM 4 O O2 EDO . . . V 7 4.025 -42.223 -21.332 1 85.3 ? O2 EDO 1110 B 1 
#
_model_server_stats.io_time_ms              17 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    38 
_model_server_stats.query_time_ms           311 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           4 
#