data_6ZOB
#
_model_server_result.job_id            7lOQykfvNC5IMNRzwHnY4w 
_model_server_result.datetime_utc      '2024-11-04 22:17:39' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6zob 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"V","auth_seq_id":1103}' 
#
_entry.id    6ZOB 
#
_exptl.entry_id    6ZOB 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          5 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            6ZOB 
_cell.length_a            145.361 
_cell.length_b            160.195 
_cell.length_c            244.341 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6ZOB 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    pentameric 
_pdbx_struct_assembly.oligomeric_count      5 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 5 J N N 
? 5 S N N 
? 5 V N N 
? 5 X N N 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 415 n n 
C1 C2 GOL sing 416 n n 
C1 H11 GOL sing 417 n n 
C1 H12 GOL sing 418 n n 
O1 HO1 GOL sing 419 n n 
C2 O2 GOL sing 420 n n 
C2 C3 GOL sing 421 n n 
C2 H2 GOL sing 422 n n 
O2 HO2 GOL sing 423 n n 
C3 O3 GOL sing 424 n n 
C3 H31 GOL sing 425 n n 
C3 H32 GOL sing 426 n n 
O3 HO3 GOL sing 427 n n 
#
_atom_sites.entry_id                     6ZOB 
_atom_sites.fract_transf_matrix[1][1]    0.006879 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.006242 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.004093 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
F 3 LMT A 1 1201 1201 LMT LMT . 
G 3 LMT A 1 1202 1301 LMT LMT . 
H 3 LMT A 1 1203 1401 LMT LMT . 
I 4 HEX A 1 1204 1501 HEX HEX . 
J 5 GOL A 1 1205 1601 GOL GOL . 
K 3 LMT A 1 1206 1701 LMT LMT . 
L 6 ETE A 1 1207 1801 ETE ETE . 
M 7 3YI A 1 1208 1901 3YI 3YI . 
N 8 EDO A 1 1209 201 EDO EDO . 
O 3 LMT B 1 1101 1101 LMT LMT . 
P 9 DDR B 1 1102 1201 DDR DDR . 
Q 10 DDQ B 1 1103 1301 DDQ DDQ . 
R 11 OCT B 1 1104 1401 OCT OCT . 
S 5 GOL B 1 1105 1501 GOL GOL . 
T 3 LMT C 1 1101 1101 LMT LMT . 
U 12 D10 C 1 1102 1201 D10 D10 . 
V 5 GOL C 1 1103 1401 GOL GOL . 
W 13 CL C 1 1104 1501 CL CL . 
X 5 GOL D 1 201 201 GOL GOL . 
Y 14 HOH A 1 1301 13 HOH HOH . 
Y 14 HOH A 2 1302 27 HOH HOH . 
Y 14 HOH A 3 1303 138 HOH HOH . 
Y 14 HOH A 4 1304 55 HOH HOH . 
Y 14 HOH A 5 1305 140 HOH HOH . 
Y 14 HOH A 6 1306 62 HOH HOH . 
Y 14 HOH A 7 1307 65 HOH HOH . 
Y 14 HOH A 8 1308 21 HOH HOH . 
Y 14 HOH A 9 1309 64 HOH HOH . 
Y 14 HOH A 10 1310 4 HOH HOH . 
Y 14 HOH A 11 1311 20 HOH HOH . 
Y 14 HOH A 12 1312 135 HOH HOH . 
Y 14 HOH A 13 1313 61 HOH HOH . 
Y 14 HOH A 14 1314 6 HOH HOH . 
Y 14 HOH A 15 1315 60 HOH HOH . 
Y 14 HOH A 16 1316 72 HOH HOH . 
Y 14 HOH A 17 1317 79 HOH HOH . 
Y 14 HOH A 18 1318 71 HOH HOH . 
Y 14 HOH A 19 1319 59 HOH HOH . 
Y 14 HOH A 20 1320 154 HOH HOH . 
Y 14 HOH A 21 1321 14 HOH HOH . 
Y 14 HOH A 22 1322 151 HOH HOH . 
Y 14 HOH A 23 1323 104 HOH HOH . 
Y 14 HOH A 24 1324 105 HOH HOH . 
Y 14 HOH A 25 1325 152 HOH HOH . 
Y 14 HOH A 26 1326 22 HOH HOH . 
Y 14 HOH A 27 1327 106 HOH HOH . 
Y 14 HOH A 28 1328 58 HOH HOH . 
Y 14 HOH A 29 1329 120 HOH HOH . 
Y 14 HOH A 30 1330 76 HOH HOH . 
Y 14 HOH A 31 1331 74 HOH HOH . 
Y 14 HOH A 32 1332 41 HOH HOH . 
Y 14 HOH A 33 1333 144 HOH HOH . 
Y 14 HOH A 34 1334 137 HOH HOH . 
Y 14 HOH A 35 1335 69 HOH HOH . 
Y 14 HOH A 36 1336 66 HOH HOH . 
Y 14 HOH A 37 1337 149 HOH HOH . 
Y 14 HOH A 38 1338 81 HOH HOH . 
Y 14 HOH A 39 1339 73 HOH HOH . 
Y 14 HOH A 40 1340 56 HOH HOH . 
Y 14 HOH A 41 1341 139 HOH HOH . 
Y 14 HOH A 42 1342 44 HOH HOH . 
Y 14 HOH A 43 1343 148 HOH HOH . 
Y 14 HOH A 44 1344 49 HOH HOH . 
Y 14 HOH A 45 1345 57 HOH HOH . 
Y 14 HOH A 46 1346 87 HOH HOH . 
Y 14 HOH A 47 1347 50 HOH HOH . 
Y 14 HOH A 48 1348 141 HOH HOH . 
Y 14 HOH A 49 1349 43 HOH HOH . 
Y 14 HOH A 50 1350 40 HOH HOH . 
Y 14 HOH A 51 1351 42 HOH HOH . 
Y 14 HOH A 52 1352 80 HOH HOH . 
Y 14 HOH A 53 1353 8 HOH HOH . 
Y 14 HOH A 54 1354 78 HOH HOH . 
Y 14 HOH A 55 1355 119 HOH HOH . 
Y 14 HOH A 56 1356 123 HOH HOH . 
Y 14 HOH A 57 1357 51 HOH HOH . 
Y 14 HOH A 58 1358 47 HOH HOH . 
Y 14 HOH A 59 1359 75 HOH HOH . 
Y 14 HOH A 60 1360 134 HOH HOH . 
Y 14 HOH A 61 1361 48 HOH HOH . 
Y 14 HOH A 62 1362 19 HOH HOH . 
Z 14 HOH B 1 1201 82 HOH HOH . 
Z 14 HOH B 2 1202 88 HOH HOH . 
Z 14 HOH B 3 1203 26 HOH HOH . 
Z 14 HOH B 4 1204 150 HOH HOH . 
Z 14 HOH B 5 1205 63 HOH HOH . 
Z 14 HOH B 6 1206 83 HOH HOH . 
Z 14 HOH B 7 1207 86 HOH HOH . 
Z 14 HOH B 8 1208 34 HOH HOH . 
Z 14 HOH B 9 1209 143 HOH HOH . 
Z 14 HOH B 10 1210 23 HOH HOH . 
Z 14 HOH B 11 1211 90 HOH HOH . 
Z 14 HOH B 12 1212 67 HOH HOH . 
Z 14 HOH B 13 1213 124 HOH HOH . 
Z 14 HOH B 14 1214 70 HOH HOH . 
Z 14 HOH B 15 1215 68 HOH HOH . 
Z 14 HOH B 16 1216 108 HOH HOH . 
Z 14 HOH B 17 1217 46 HOH HOH . 
Z 14 HOH B 18 1218 153 HOH HOH . 
Z 14 HOH B 19 1219 45 HOH HOH . 
Z 14 HOH B 20 1220 38 HOH HOH . 
Z 14 HOH B 21 1221 25 HOH HOH . 
Z 14 HOH B 22 1222 24 HOH HOH . 
Z 14 HOH B 23 1223 84 HOH HOH . 
Z 14 HOH B 24 1224 136 HOH HOH . 
Z 14 HOH B 25 1225 85 HOH HOH . 
Z 14 HOH B 26 1226 91 HOH HOH . 
Z 14 HOH B 27 1227 125 HOH HOH . 
Z 14 HOH B 28 1228 89 HOH HOH . 
Z 14 HOH B 29 1229 18 HOH HOH . 
Z 14 HOH B 30 1230 133 HOH HOH . 
AA 14 HOH C 1 1201 31 HOH HOH . 
AA 14 HOH C 2 1202 7 HOH HOH . 
AA 14 HOH C 3 1203 114 HOH HOH . 
AA 14 HOH C 4 1204 113 HOH HOH . 
AA 14 HOH C 5 1205 37 HOH HOH . 
AA 14 HOH C 6 1206 1 HOH HOH . 
AA 14 HOH C 7 1207 98 HOH HOH . 
AA 14 HOH C 8 1208 36 HOH HOH . 
AA 14 HOH C 9 1209 3 HOH HOH . 
AA 14 HOH C 10 1210 109 HOH HOH . 
AA 14 HOH C 11 1211 129 HOH HOH . 
AA 14 HOH C 12 1212 103 HOH HOH . 
AA 14 HOH C 13 1213 15 HOH HOH . 
AA 14 HOH C 14 1214 12 HOH HOH . 
AA 14 HOH C 15 1215 99 HOH HOH . 
AA 14 HOH C 16 1216 10 HOH HOH . 
AA 14 HOH C 17 1217 102 HOH HOH . 
AA 14 HOH C 18 1218 9 HOH HOH . 
AA 14 HOH C 19 1219 96 HOH HOH . 
AA 14 HOH C 20 1220 107 HOH HOH . 
AA 14 HOH C 21 1221 53 HOH HOH . 
AA 14 HOH C 22 1222 16 HOH HOH . 
AA 14 HOH C 23 1223 95 HOH HOH . 
AA 14 HOH C 24 1224 115 HOH HOH . 
AA 14 HOH C 25 1225 29 HOH HOH . 
AA 14 HOH C 26 1226 11 HOH HOH . 
AA 14 HOH C 27 1227 93 HOH HOH . 
AA 14 HOH C 28 1228 92 HOH HOH . 
AA 14 HOH C 29 1229 28 HOH HOH . 
AA 14 HOH C 30 1230 128 HOH HOH . 
AA 14 HOH C 31 1231 145 HOH HOH . 
AA 14 HOH C 32 1232 110 HOH HOH . 
AA 14 HOH C 33 1233 35 HOH HOH . 
AA 14 HOH C 34 1234 52 HOH HOH . 
AA 14 HOH C 35 1235 17 HOH HOH . 
AA 14 HOH C 36 1236 30 HOH HOH . 
AA 14 HOH C 37 1237 77 HOH HOH . 
AA 14 HOH C 38 1238 130 HOH HOH . 
AA 14 HOH C 39 1239 97 HOH HOH . 
AA 14 HOH C 40 1240 116 HOH HOH . 
AA 14 HOH C 41 1241 112 HOH HOH . 
AA 14 HOH C 42 1242 126 HOH HOH . 
AA 14 HOH C 43 1243 100 HOH HOH . 
AA 14 HOH C 44 1244 94 HOH HOH . 
AA 14 HOH C 45 1245 5 HOH HOH . 
AA 14 HOH C 46 1246 33 HOH HOH . 
AA 14 HOH C 47 1247 32 HOH HOH . 
AA 14 HOH C 48 1248 111 HOH HOH . 
AA 14 HOH C 49 1249 127 HOH HOH . 
AA 14 HOH C 50 1250 117 HOH HOH . 
AA 14 HOH C 51 1251 118 HOH HOH . 
BA 14 HOH D 1 301 142 HOH HOH . 
BA 14 HOH D 2 302 121 HOH HOH . 
CA 14 HOH E 1 201 2 HOH HOH . 
CA 14 HOH E 2 202 147 HOH HOH . 
CA 14 HOH E 3 203 122 HOH HOH . 
CA 14 HOH E 4 204 101 HOH HOH . 
CA 14 HOH E 5 205 39 HOH HOH . 
CA 14 HOH E 6 206 132 HOH HOH . 
CA 14 HOH E 7 207 146 HOH HOH . 
CA 14 HOH E 8 208 131 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . V 5 30.949 -44.425 2.749 1 58.79 ? C1 GOL 1103 C 1 
HETATM 2 O O1 GOL . . . V 5 31.791 -43.652 3.6 1 58.82 ? O1 GOL 1103 C 1 
HETATM 3 C C2 GOL . . . V 5 29.497 -44.03 2.9 1 58.78 ? C2 GOL 1103 C 1 
HETATM 4 O O2 GOL . . . V 5 29.307 -42.705 2.406 1 58.79 ? O2 GOL 1103 C 1 
HETATM 5 C C3 GOL . . . V 5 29.007 -44.118 4.33 1 58.85 ? C3 GOL 1103 C 1 
HETATM 6 O O3 GOL . . . V 5 27.592 -44.268 4.392 1 58.84 ? O3 GOL 1103 C 1 
#
_model_server_stats.io_time_ms              18 
_model_server_stats.parse_time_ms           13 
_model_server_stats.create_model_time_ms    81 
_model_server_stats.query_time_ms           330 
_model_server_stats.encode_time_ms          6 
_model_server_stats.element_count           6 
#