data_6ZOC # _model_server_result.job_id EUUiM1YaW8fbopmj15-bQA _model_server_result.datetime_utc '2024-11-13 05:55:05' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6zoc # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"JA","auth_seq_id":1110}' # _entry.id 6ZOC # _exptl.entry_id 6ZOC _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 12 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6ZOC _cell.length_a 145.327 _cell.length_b 161.26 _cell.length_c 244.023 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6ZOC _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details pentameric _pdbx_struct_assembly.oligomeric_count 5 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 6 I N N ? 6 J N N ? 6 M N N ? 6 N N N ? 6 Q N N ? 6 S N N ? 6 GA N N ? 6 IA N N ? 6 JA N N ? 6 KA N N ? 6 LA N N ? 6 PA N N # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 305 n n C1 C2 EDO sing 306 n n C1 H11 EDO sing 307 n n C1 H12 EDO sing 308 n n O1 HO1 EDO sing 309 n n C2 O2 EDO sing 310 n n C2 H21 EDO sing 311 n n C2 H22 EDO sing 312 n n O2 HO2 EDO sing 313 n n # _atom_sites.entry_id 6ZOC _atom_sites.fract_transf_matrix[1][1] 0.006881 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006201 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004098 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code F 3 C14 A 1 1201 1201 C14 C14 . G 4 LMT A 1 1202 1301 LMT LMT . H 5 ERY A 1 1203 1401 ERY ERY . I 6 EDO A 1 1204 1501 EDO EDO . J 6 EDO A 1 1205 1601 EDO EDO . K 7 GOL A 1 1206 1801 GOL GOL . L 7 GOL A 1 1207 1901 GOL GOL . M 6 EDO A 1 1208 2001 EDO EDO . N 6 EDO A 1 1209 1701 EDO EDO . O 8 D12 A 1 1210 1201 D12 D12 . P 7 GOL A 1 1211 2301 GOL GOL . Q 6 EDO A 1 1212 2401 EDO EDO . R 4 LMT B 1 1101 1101 LMT LMT . S 6 EDO B 1 1102 1301 EDO EDO . T 9 OCT B 1 1103 1401 OCT OCT . U 10 HEX B 1 1104 1501 HEX HEX . V 4 LMT B 1 1105 1801 LMT LMT . W 8 D12 B 1 1106 2001 D12 D12 . X 11 3YI B 1 1107 2101 3YI 3YI . Y 12 DDQ B 1 1108 3501 DDQ DDQ . Z 13 SO4 B 1 1109 1 SO4 SO4 . AA 4 LMT C 1 1101 1101 LMT LMT . BA 9 OCT C 1 1102 1401 OCT OCT . CA 3 C14 C 1 1103 1701 C14 C14 . DA 14 PG4 C 1 1104 1801 PG4 PG4 . EA 7 GOL C 1 1105 2001 GOL GOL . FA 7 GOL C 1 1106 2101 GOL GOL . GA 6 EDO C 1 1107 2501 EDO EDO . HA 4 LMT C 1 1108 2601 LMT LMT . IA 6 EDO C 1 1109 2701 EDO EDO . JA 6 EDO C 1 1110 2801 EDO EDO . KA 6 EDO C 1 1111 2901 EDO EDO . LA 6 EDO C 1 1112 3401 EDO EDO . MA 15 PTY C 1 1113 3601 PTY PTY . NA 10 HEX C 1 1114 3701 HEX HEX . OA 13 SO4 D 1 201 2 SO4 SO4 . PA 6 EDO E 1 201 201 EDO EDO . QA 16 HOH A 1 1301 178 HOH HOH . QA 16 HOH A 2 1302 42 HOH HOH . QA 16 HOH A 3 1303 115 HOH HOH . QA 16 HOH A 4 1304 158 HOH HOH . QA 16 HOH A 5 1305 15 HOH HOH . QA 16 HOH A 6 1306 88 HOH HOH . QA 16 HOH A 7 1307 172 HOH HOH . QA 16 HOH A 8 1308 152 HOH HOH . QA 16 HOH A 9 1309 177 HOH HOH . QA 16 HOH A 10 1310 153 HOH HOH . QA 16 HOH A 11 1311 50 HOH HOH . QA 16 HOH A 12 1312 150 HOH HOH . QA 16 HOH A 13 1313 56 HOH HOH . QA 16 HOH A 14 1314 157 HOH HOH . QA 16 HOH A 15 1315 104 HOH HOH . QA 16 HOH A 16 1316 156 HOH HOH . QA 16 HOH A 17 1317 89 HOH HOH . QA 16 HOH A 18 1318 193 HOH HOH . QA 16 HOH A 19 1319 166 HOH HOH . QA 16 HOH A 20 1320 173 HOH HOH . QA 16 HOH A 21 1321 13 HOH HOH . QA 16 HOH A 22 1322 155 HOH HOH . QA 16 HOH A 23 1323 30 HOH HOH . QA 16 HOH A 24 1324 84 HOH HOH . QA 16 HOH A 25 1325 107 HOH HOH . QA 16 HOH A 26 1326 75 HOH HOH . QA 16 HOH A 27 1327 77 HOH HOH . QA 16 HOH A 28 1328 29 HOH HOH . QA 16 HOH A 29 1329 54 HOH HOH . QA 16 HOH A 30 1330 151 HOH HOH . QA 16 HOH A 31 1331 45 HOH HOH . QA 16 HOH A 32 1332 27 HOH HOH . QA 16 HOH A 33 1333 19 HOH HOH . QA 16 HOH A 34 1334 18 HOH HOH . QA 16 HOH A 35 1335 116 HOH HOH . QA 16 HOH A 36 1336 82 HOH HOH . QA 16 HOH A 37 1337 12 HOH HOH . QA 16 HOH A 38 1338 78 HOH HOH . QA 16 HOH A 39 1339 83 HOH HOH . QA 16 HOH A 40 1340 22 HOH HOH . QA 16 HOH A 41 1341 135 HOH HOH . QA 16 HOH A 42 1342 106 HOH HOH . QA 16 HOH A 43 1343 63 HOH HOH . QA 16 HOH A 44 1344 44 HOH HOH . QA 16 HOH A 45 1345 53 HOH HOH . QA 16 HOH A 46 1346 51 HOH HOH . QA 16 HOH A 47 1347 20 HOH HOH . QA 16 HOH A 48 1348 21 HOH HOH . QA 16 HOH A 49 1349 76 HOH HOH . QA 16 HOH A 50 1350 81 HOH HOH . QA 16 HOH A 51 1351 168 HOH HOH . QA 16 HOH A 52 1352 55 HOH HOH . QA 16 HOH A 53 1353 110 HOH HOH . QA 16 HOH A 54 1354 176 HOH HOH . QA 16 HOH A 55 1355 43 HOH HOH . QA 16 HOH A 56 1356 117 HOH HOH . QA 16 HOH A 57 1357 171 HOH HOH . QA 16 HOH A 58 1358 46 HOH HOH . QA 16 HOH A 59 1359 28 HOH HOH . QA 16 HOH A 60 1360 174 HOH HOH . QA 16 HOH A 61 1361 192 HOH HOH . QA 16 HOH A 62 1362 170 HOH HOH . QA 16 HOH A 63 1363 108 HOH HOH . QA 16 HOH A 64 1364 48 HOH HOH . QA 16 HOH A 65 1365 118 HOH HOH . RA 16 HOH B 1 1201 39 HOH HOH . RA 16 HOH B 2 1202 154 HOH HOH . RA 16 HOH B 3 1203 7 HOH HOH . RA 16 HOH B 4 1204 149 HOH HOH . RA 16 HOH B 5 1205 128 HOH HOH . RA 16 HOH B 6 1206 6 HOH HOH . RA 16 HOH B 7 1207 175 HOH HOH . RA 16 HOH B 8 1208 163 HOH HOH . RA 16 HOH B 9 1209 52 HOH HOH . RA 16 HOH B 10 1210 74 HOH HOH . RA 16 HOH B 11 1211 8 HOH HOH . RA 16 HOH B 12 1212 61 HOH HOH . RA 16 HOH B 13 1213 185 HOH HOH . RA 16 HOH B 14 1214 79 HOH HOH . RA 16 HOH B 15 1215 130 HOH HOH . RA 16 HOH B 16 1216 87 HOH HOH . RA 16 HOH B 17 1217 58 HOH HOH . RA 16 HOH B 18 1218 119 HOH HOH . RA 16 HOH B 19 1219 85 HOH HOH . RA 16 HOH B 20 1220 126 HOH HOH . RA 16 HOH B 21 1221 86 HOH HOH . RA 16 HOH B 22 1222 64 HOH HOH . RA 16 HOH B 23 1223 9 HOH HOH . RA 16 HOH B 24 1224 194 HOH HOH . RA 16 HOH B 25 1225 114 HOH HOH . RA 16 HOH B 26 1226 73 HOH HOH . RA 16 HOH B 27 1227 127 HOH HOH . RA 16 HOH B 28 1228 131 HOH HOH . RA 16 HOH B 29 1229 10 HOH HOH . RA 16 HOH B 30 1230 71 HOH HOH . RA 16 HOH B 31 1231 80 HOH HOH . RA 16 HOH B 32 1232 62 HOH HOH . RA 16 HOH B 33 1233 120 HOH HOH . RA 16 HOH B 34 1234 105 HOH HOH . RA 16 HOH B 35 1235 66 HOH HOH . RA 16 HOH B 36 1236 124 HOH HOH . RA 16 HOH B 37 1237 125 HOH HOH . RA 16 HOH B 38 1238 40 HOH HOH . RA 16 HOH B 39 1239 65 HOH HOH . RA 16 HOH B 40 1240 49 HOH HOH . RA 16 HOH B 41 1241 123 HOH HOH . RA 16 HOH B 42 1242 121 HOH HOH . RA 16 HOH B 43 1243 129 HOH HOH . RA 16 HOH B 44 1244 5 HOH HOH . RA 16 HOH B 45 1245 195 HOH HOH . RA 16 HOH B 46 1246 57 HOH HOH . RA 16 HOH B 47 1247 41 HOH HOH . RA 16 HOH B 48 1248 122 HOH HOH . RA 16 HOH B 49 1249 59 HOH HOH . RA 16 HOH B 50 1250 4 HOH HOH . SA 16 HOH C 1 1201 134 HOH HOH . SA 16 HOH C 2 1202 95 HOH HOH . SA 16 HOH C 3 1203 25 HOH HOH . SA 16 HOH C 4 1204 16 HOH HOH . SA 16 HOH C 5 1205 139 HOH HOH . SA 16 HOH C 6 1206 93 HOH HOH . SA 16 HOH C 7 1207 144 HOH HOH . SA 16 HOH C 8 1208 14 HOH HOH . SA 16 HOH C 9 1209 162 HOH HOH . SA 16 HOH C 10 1210 142 HOH HOH . SA 16 HOH C 11 1211 23 HOH HOH . SA 16 HOH C 12 1212 187 HOH HOH . SA 16 HOH C 13 1213 167 HOH HOH . SA 16 HOH C 14 1214 184 HOH HOH . SA 16 HOH C 15 1215 164 HOH HOH . SA 16 HOH C 16 1216 161 HOH HOH . SA 16 HOH C 17 1217 137 HOH HOH . SA 16 HOH C 18 1218 35 HOH HOH . SA 16 HOH C 19 1219 68 HOH HOH . SA 16 HOH C 20 1220 98 HOH HOH . SA 16 HOH C 21 1221 141 HOH HOH . SA 16 HOH C 22 1222 70 HOH HOH . SA 16 HOH C 23 1223 17 HOH HOH . SA 16 HOH C 24 1224 72 HOH HOH . SA 16 HOH C 25 1225 60 HOH HOH . SA 16 HOH C 26 1226 97 HOH HOH . SA 16 HOH C 27 1227 190 HOH HOH . SA 16 HOH C 28 1228 183 HOH HOH . SA 16 HOH C 29 1229 140 HOH HOH . SA 16 HOH C 30 1230 138 HOH HOH . SA 16 HOH C 31 1231 92 HOH HOH . SA 16 HOH C 32 1232 3 HOH HOH . SA 16 HOH C 33 1233 100 HOH HOH . SA 16 HOH C 34 1234 189 HOH HOH . SA 16 HOH C 35 1235 136 HOH HOH . SA 16 HOH C 36 1236 36 HOH HOH . SA 16 HOH C 37 1237 47 HOH HOH . SA 16 HOH C 38 1238 2 HOH HOH . SA 16 HOH C 39 1239 1 HOH HOH . SA 16 HOH C 40 1240 91 HOH HOH . SA 16 HOH C 41 1241 160 HOH HOH . SA 16 HOH C 42 1242 26 HOH HOH . SA 16 HOH C 43 1243 90 HOH HOH . SA 16 HOH C 44 1244 165 HOH HOH . SA 16 HOH C 45 1245 186 HOH HOH . SA 16 HOH C 46 1246 188 HOH HOH . SA 16 HOH C 47 1247 67 HOH HOH . SA 16 HOH C 48 1248 11 HOH HOH . SA 16 HOH C 49 1249 94 HOH HOH . SA 16 HOH C 50 1250 38 HOH HOH . SA 16 HOH C 51 1251 31 HOH HOH . SA 16 HOH C 52 1252 96 HOH HOH . SA 16 HOH C 53 1253 99 HOH HOH . SA 16 HOH C 54 1254 181 HOH HOH . SA 16 HOH C 55 1255 37 HOH HOH . SA 16 HOH C 56 1256 159 HOH HOH . SA 16 HOH C 57 1257 69 HOH HOH . SA 16 HOH C 58 1258 24 HOH HOH . SA 16 HOH C 59 1259 191 HOH HOH . TA 16 HOH D 1 301 145 HOH HOH . TA 16 HOH D 2 302 146 HOH HOH . TA 16 HOH D 3 303 169 HOH HOH . TA 16 HOH D 4 304 132 HOH HOH . TA 16 HOH D 5 305 133 HOH HOH . UA 16 HOH E 1 301 112 HOH HOH . UA 16 HOH E 2 302 180 HOH HOH . UA 16 HOH E 3 303 147 HOH HOH . UA 16 HOH E 4 304 148 HOH HOH . UA 16 HOH E 5 305 179 HOH HOH . UA 16 HOH E 6 306 113 HOH HOH . UA 16 HOH E 7 307 109 HOH HOH . UA 16 HOH E 8 308 111 HOH HOH . UA 16 HOH E 9 309 32 HOH HOH . UA 16 HOH E 10 310 182 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . JA 6 80.127 -30.707 -54.798 1 53.18 ? C1 EDO 1110 C 1 HETATM 2 O O1 EDO . . . JA 6 81.142 -30.605 -55.776 1 53.2 ? O1 EDO 1110 C 1 HETATM 3 C C2 EDO . . . JA 6 78.991 -29.787 -55.044 1 53.16 ? C2 EDO 1110 C 1 HETATM 4 O O2 EDO . . . JA 6 77.997 -29.859 -54.042 1 53.16 ? O2 EDO 1110 C 1 HETATM 5 H H11 EDO . . . JA 6 80.511 -30.508 -53.919 1 66.54 ? H11 EDO 1110 C 1 HETATM 6 H H12 EDO . . . JA 6 79.791 -31.628 -54.782 1 66.7 ? H12 EDO 1110 C 1 HETATM 7 H HO1 EDO . . . JA 6 81.774 -31.133 -55.581 1 67.23 ? HO1 EDO 1110 C 1 HETATM 8 H H21 EDO . . . JA 6 79.331 -28.87 -55.092 1 66.37 ? H21 EDO 1110 C 1 HETATM 9 H H22 EDO . . . JA 6 78.588 -30.007 -55.91 1 66.57 ? H22 EDO 1110 C 1 HETATM 10 H HO2 EDO . . . JA 6 78.34 -29.661 -53.294 1 65.93 ? HO2 EDO 1110 C 1 # _model_server_stats.io_time_ms 60 _model_server_stats.parse_time_ms 22 _model_server_stats.create_model_time_ms 82 _model_server_stats.query_time_ms 251 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 10 #