data_6ZOD
#
_model_server_result.job_id            pur9Sd4o-a-1ihLRY5sbHQ 
_model_server_result.datetime_utc      '2024-11-27 09:00:26' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6zod 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"Y","auth_seq_id":1207}' 
#
_entry.id    6ZOD 
#
_exptl.entry_id    6ZOD 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              142.282 
_entity.id                          6 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            DECANE 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            6ZOD 
_cell.length_a            145.985 
_cell.length_b            166.129 
_cell.length_c            243.683 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6ZOD 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    pentameric 
_pdbx_struct_assembly.oligomeric_count      5 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA,VA,WA,XA,YA 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 6 L N N 
? 6 Y N N 
#
_chem_comp.formula           'C10 H22' 
_chem_comp.formula_weight    142.282 
_chem_comp.id                D10 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              DECANE 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 D10 sing 138 n n 
C1 H11 D10 sing 139 n n 
C1 H12 D10 sing 140 n n 
C1 H13 D10 sing 141 n n 
C2 C3 D10 sing 142 n n 
C2 H21 D10 sing 143 n n 
C2 H22 D10 sing 144 n n 
C3 C4 D10 sing 145 n n 
C3 H31 D10 sing 146 n n 
C3 H32 D10 sing 147 n n 
C4 C5 D10 sing 148 n n 
C4 H41 D10 sing 149 n n 
C4 H42 D10 sing 150 n n 
C5 C6 D10 sing 151 n n 
C5 H51 D10 sing 152 n n 
C5 H52 D10 sing 153 n n 
C6 C7 D10 sing 154 n n 
C6 H61 D10 sing 155 n n 
C6 H62 D10 sing 156 n n 
C7 C8 D10 sing 157 n n 
C7 H71 D10 sing 158 n n 
C7 H72 D10 sing 159 n n 
C8 C9 D10 sing 160 n n 
C8 H81 D10 sing 161 n n 
C8 H82 D10 sing 162 n n 
C9 C10 D10 sing 163 n n 
C9 H91 D10 sing 164 n n 
C9 H92 D10 sing 165 n n 
C10 H101 D10 sing 166 n n 
C10 H102 D10 sing 167 n n 
C10 H103 D10 sing 168 n n 
#
_atom_sites.entry_id                     6ZOD 
_atom_sites.fract_transf_matrix[1][1]    0.00685 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.006019 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.004104 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
F 3 LMT A 1 1101 1101 LMT LMT . 
G 4 EDO A 1 1102 1201 EDO EDO . 
H 3 LMT A 1 1103 1401 LMT LMT . 
I 4 EDO A 1 1104 1601 EDO EDO . 
J 5 GOL A 1 1105 1701 GOL GOL . 
K 4 EDO A 1 1106 2501 EDO EDO . 
L 6 D10 A 1 1107 3001 D10 D10 . 
M 4 EDO A 1 1108 3101 EDO EDO . 
N 4 EDO A 1 1109 3201 EDO EDO . 
O 4 EDO A 1 1110 3301 EDO EDO . 
P 3 LMT A 1 1111 3401 LMT LMT . 
Q 3 LMT A 1 1112 1501 LMT LMT . 
R 7 FUA A 1 1113 3 FUA FUA . 
S 4 EDO B 1 1201 1201 EDO EDO . 
T 5 GOL B 1 1202 1601 GOL GOL . 
U 4 EDO B 1 1203 1701 EDO EDO . 
V 8 PGE B 1 1204 1801 PGE PGE . 
W 4 EDO B 1 1205 2201 EDO EDO . 
X 4 EDO B 1 1206 2301 EDO EDO . 
Y 6 D10 B 1 1207 2601 D10 D10 . 
Z 9 8K6 B 1 1208 2701 8K6 8K6 . 
AA 10 SO4 B 1 1209 3 SO4 SO4 . 
BA 10 SO4 B 1 1210 4 SO4 SO4 . 
CA 10 SO4 B 1 1211 5 SO4 SO4 . 
DA 10 SO4 B 1 1212 6 SO4 SO4 . 
EA 7 FUA B 1 1213 1 FUA FUA . 
FA 7 FUA B 1 1214 4 FUA FUA . 
GA 7 FUA B 1 1215 1 FUA FUA . 
HA 4 EDO B 1 1216 1 EDO EDO . 
IA 4 EDO C 1 1301 1301 EDO EDO . 
JA 3 LMT C 1 1302 1101 LMT LMT . 
KA 11 PTY C 1 1303 1801 PTY PTY . 
LA 4 EDO C 1 1304 1901 EDO EDO . 
MA 3 LMT C 1 1305 2101 LMT LMT . 
NA 3 LMT C 1 1306 2401 LMT LMT . 
OA 11 PTY C 1 1307 2601 PTY PTY . 
PA 12 D12 C 1 1308 2701 D12 D12 . 
QA 13 HEX C 1 1309 2901 HEX HEX . 
RA 10 SO4 C 1 1310 1 SO4 SO4 . 
SA 4 EDO D 1 201 201 EDO EDO . 
TA 4 EDO D 1 202 301 EDO EDO . 
UA 14 HOH A 1 1201 32 HOH HOH . 
UA 14 HOH A 2 1202 2 HOH HOH . 
UA 14 HOH A 3 1203 29 HOH HOH . 
UA 14 HOH A 4 1204 180 HOH HOH . 
UA 14 HOH A 5 1205 72 HOH HOH . 
UA 14 HOH A 6 1206 39 HOH HOH . 
UA 14 HOH A 7 1207 98 HOH HOH . 
UA 14 HOH A 8 1208 173 HOH HOH . 
UA 14 HOH A 9 1209 97 HOH HOH . 
UA 14 HOH A 10 1210 36 HOH HOH . 
UA 14 HOH A 11 1211 93 HOH HOH . 
UA 14 HOH A 12 1212 171 HOH HOH . 
UA 14 HOH A 13 1213 139 HOH HOH . 
UA 14 HOH A 14 1214 174 HOH HOH . 
UA 14 HOH A 15 1215 23 HOH HOH . 
UA 14 HOH A 16 1216 68 HOH HOH . 
UA 14 HOH A 17 1217 94 HOH HOH . 
UA 14 HOH A 18 1218 181 HOH HOH . 
UA 14 HOH A 19 1219 34 HOH HOH . 
UA 14 HOH A 20 1220 115 HOH HOH . 
UA 14 HOH A 21 1221 159 HOH HOH . 
UA 14 HOH A 22 1222 140 HOH HOH . 
UA 14 HOH A 23 1223 172 HOH HOH . 
UA 14 HOH A 24 1224 153 HOH HOH . 
UA 14 HOH A 25 1225 13 HOH HOH . 
UA 14 HOH A 26 1226 35 HOH HOH . 
UA 14 HOH A 27 1227 41 HOH HOH . 
UA 14 HOH A 28 1228 25 HOH HOH . 
UA 14 HOH A 29 1229 40 HOH HOH . 
UA 14 HOH A 30 1230 179 HOH HOH . 
UA 14 HOH A 31 1231 4 HOH HOH . 
UA 14 HOH A 32 1232 176 HOH HOH . 
UA 14 HOH A 33 1233 14 HOH HOH . 
UA 14 HOH A 34 1234 178 HOH HOH . 
UA 14 HOH A 35 1235 3 HOH HOH . 
UA 14 HOH A 36 1236 177 HOH HOH . 
UA 14 HOH A 37 1237 24 HOH HOH . 
UA 14 HOH A 38 1238 16 HOH HOH . 
UA 14 HOH A 39 1239 182 HOH HOH . 
UA 14 HOH A 40 1240 175 HOH HOH . 
UA 14 HOH A 41 1241 149 HOH HOH . 
UA 14 HOH A 42 1242 92 HOH HOH . 
UA 14 HOH A 43 1243 96 HOH HOH . 
UA 14 HOH A 44 1244 28 HOH HOH . 
UA 14 HOH A 45 1245 69 HOH HOH . 
UA 14 HOH A 46 1246 31 HOH HOH . 
UA 14 HOH A 47 1247 183 HOH HOH . 
UA 14 HOH A 48 1248 26 HOH HOH . 
UA 14 HOH A 49 1249 127 HOH HOH . 
UA 14 HOH A 50 1250 185 HOH HOH . 
UA 14 HOH A 51 1251 154 HOH HOH . 
UA 14 HOH A 52 1252 186 HOH HOH . 
UA 14 HOH A 53 1253 100 HOH HOH . 
UA 14 HOH A 54 1254 95 HOH HOH . 
VA 14 HOH B 1 1301 109 HOH HOH . 
VA 14 HOH B 2 1302 50 HOH HOH . 
VA 14 HOH B 3 1303 17 HOH HOH . 
VA 14 HOH B 4 1304 129 HOH HOH . 
VA 14 HOH B 5 1305 190 HOH HOH . 
VA 14 HOH B 6 1306 193 HOH HOH . 
VA 14 HOH B 7 1307 160 HOH HOH . 
VA 14 HOH B 8 1308 125 HOH HOH . 
VA 14 HOH B 9 1309 57 HOH HOH . 
VA 14 HOH B 10 1310 8 HOH HOH . 
VA 14 HOH B 11 1311 48 HOH HOH . 
VA 14 HOH B 12 1312 124 HOH HOH . 
VA 14 HOH B 13 1313 195 HOH HOH . 
VA 14 HOH B 14 1314 107 HOH HOH . 
VA 14 HOH B 15 1315 164 HOH HOH . 
VA 14 HOH B 16 1316 106 HOH HOH . 
VA 14 HOH B 17 1317 130 HOH HOH . 
VA 14 HOH B 18 1318 119 HOH HOH . 
VA 14 HOH B 19 1319 126 HOH HOH . 
VA 14 HOH B 20 1320 157 HOH HOH . 
VA 14 HOH B 21 1321 184 HOH HOH . 
VA 14 HOH B 22 1322 158 HOH HOH . 
VA 14 HOH B 23 1323 47 HOH HOH . 
VA 14 HOH B 24 1324 46 HOH HOH . 
VA 14 HOH B 25 1325 9 HOH HOH . 
VA 14 HOH B 26 1326 54 HOH HOH . 
VA 14 HOH B 27 1327 192 HOH HOH . 
VA 14 HOH B 28 1328 196 HOH HOH . 
VA 14 HOH B 29 1329 49 HOH HOH . 
VA 14 HOH B 30 1330 122 HOH HOH . 
VA 14 HOH B 31 1331 108 HOH HOH . 
VA 14 HOH B 32 1332 189 HOH HOH . 
VA 14 HOH B 33 1333 131 HOH HOH . 
VA 14 HOH B 34 1334 104 HOH HOH . 
VA 14 HOH B 35 1335 128 HOH HOH . 
VA 14 HOH B 36 1336 123 HOH HOH . 
VA 14 HOH B 37 1337 162 HOH HOH . 
VA 14 HOH B 38 1338 163 HOH HOH . 
VA 14 HOH B 39 1339 102 HOH HOH . 
VA 14 HOH B 40 1340 120 HOH HOH . 
VA 14 HOH B 41 1341 188 HOH HOH . 
VA 14 HOH B 42 1342 191 HOH HOH . 
VA 14 HOH B 43 1343 105 HOH HOH . 
VA 14 HOH B 44 1344 197 HOH HOH . 
VA 14 HOH B 45 1345 161 HOH HOH . 
WA 14 HOH C 1 1401 6 HOH HOH . 
WA 14 HOH C 2 1402 110 HOH HOH . 
WA 14 HOH C 3 1403 73 HOH HOH . 
WA 14 HOH C 4 1404 58 HOH HOH . 
WA 14 HOH C 5 1405 21 HOH HOH . 
WA 14 HOH C 6 1406 27 HOH HOH . 
WA 14 HOH C 7 1407 137 HOH HOH . 
WA 14 HOH C 8 1408 118 HOH HOH . 
WA 14 HOH C 9 1409 78 HOH HOH . 
WA 14 HOH C 10 1410 165 HOH HOH . 
WA 14 HOH C 11 1411 147 HOH HOH . 
WA 14 HOH C 12 1412 145 HOH HOH . 
WA 14 HOH C 13 1413 76 HOH HOH . 
WA 14 HOH C 14 1414 43 HOH HOH . 
WA 14 HOH C 15 1415 116 HOH HOH . 
WA 14 HOH C 16 1416 60 HOH HOH . 
WA 14 HOH C 17 1417 166 HOH HOH . 
WA 14 HOH C 18 1418 71 HOH HOH . 
WA 14 HOH C 19 1419 111 HOH HOH . 
WA 14 HOH C 20 1420 81 HOH HOH . 
WA 14 HOH C 21 1421 143 HOH HOH . 
WA 14 HOH C 22 1422 62 HOH HOH . 
WA 14 HOH C 23 1423 61 HOH HOH . 
WA 14 HOH C 24 1424 199 HOH HOH . 
WA 14 HOH C 25 1425 79 HOH HOH . 
WA 14 HOH C 26 1426 70 HOH HOH . 
WA 14 HOH C 27 1427 146 HOH HOH . 
WA 14 HOH C 28 1428 75 HOH HOH . 
WA 14 HOH C 29 1429 167 HOH HOH . 
WA 14 HOH C 30 1430 22 HOH HOH . 
WA 14 HOH C 31 1431 5 HOH HOH . 
WA 14 HOH C 32 1432 169 HOH HOH . 
WA 14 HOH C 33 1433 134 HOH HOH . 
WA 14 HOH C 34 1434 200 HOH HOH . 
WA 14 HOH C 35 1435 91 HOH HOH . 
WA 14 HOH C 36 1436 90 HOH HOH . 
WA 14 HOH C 37 1437 144 HOH HOH . 
WA 14 HOH C 38 1438 89 HOH HOH . 
WA 14 HOH C 39 1439 117 HOH HOH . 
WA 14 HOH C 40 1440 170 HOH HOH . 
WA 14 HOH C 41 1441 99 HOH HOH . 
WA 14 HOH C 42 1442 198 HOH HOH . 
WA 14 HOH C 43 1443 168 HOH HOH . 
WA 14 HOH C 44 1444 88 HOH HOH . 
WA 14 HOH C 45 1445 112 HOH HOH . 
XA 14 HOH D 1 301 86 HOH HOH . 
XA 14 HOH D 2 302 82 HOH HOH . 
XA 14 HOH D 3 303 194 HOH HOH . 
YA 14 HOH E 1 201 187 HOH HOH . 
YA 14 HOH E 2 202 136 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 D10 . . . Y 6 41.505 -0.146 -63.996 1 73.45 ? C1 D10 1207 B 1 
HETATM 2 C C2 D10 . . . Y 6 42.68 -1.094 -63.993 1 73.44 ? C2 D10 1207 B 1 
HETATM 3 C C3 D10 . . . Y 6 42.36 -2.421 -63.351 1 81.32 ? C3 D10 1207 B 1 
HETATM 4 C C4 D10 . . . Y 6 43.512 -3.391 -63.335 1 72.16 ? C4 D10 1207 B 1 
HETATM 5 C C5 D10 . . . Y 6 43.233 -4.704 -62.641 1 65.55 ? C5 D10 1207 B 1 
HETATM 6 C C6 D10 . . . Y 6 44.404 -5.65 -62.698 1 78 ? C6 D10 1207 B 1 
HETATM 7 C C7 D10 . . . Y 6 44.235 -6.936 -61.938 1 80.62 ? C7 D10 1207 B 1 
HETATM 8 C C8 D10 . . . Y 6 43.195 -7.874 -62.494 1 83.24 ? C8 D10 1207 B 1 
HETATM 9 C C9 D10 . . . Y 6 43.233 -9.205 -61.787 1 84.94 ? C9 D10 1207 B 1 
HETATM 10 C C10 D10 . . . Y 6 42.166 -10.182 -62.207 1 88.59 ? C10 D10 1207 B 1 
HETATM 11 H H11 D10 . . . Y 6 41.762 0.692 -64.419 1 88.15 ? H11 D10 1207 B 1 
HETATM 12 H H12 D10 . . . Y 6 41.224 0.028 -63.08 1 88.15 ? H12 D10 1207 B 1 
HETATM 13 H H13 D10 . . . Y 6 40.767 -0.544 -64.49 1 88.15 ? H13 D10 1207 B 1 
HETATM 14 H H21 D10 . . . Y 6 43.427 -0.678 -63.51 1 88.13 ? H21 D10 1207 B 1 
HETATM 15 H H22 D10 . . . Y 6 42.971 -1.248 -64.918 1 88.13 ? H22 D10 1207 B 1 
HETATM 16 H H31 D10 . . . Y 6 41.609 -2.831 -63.832 1 97.59 ? H31 D10 1207 B 1 
HETATM 17 H H32 D10 . . . Y 6 42.069 -2.262 -62.427 1 97.59 ? H32 D10 1207 B 1 
HETATM 18 H H41 D10 . . . Y 6 44.274 -2.961 -62.892 1 86.59 ? H41 D10 1207 B 1 
HETATM 19 H H42 D10 . . . Y 6 43.773 -3.578 -64.262 1 86.59 ? H42 D10 1207 B 1 
HETATM 20 H H51 D10 . . . Y 6 42.456 -5.13 -63.061 1 78.66 ? H51 D10 1207 B 1 
HETATM 21 H H52 D10 . . . Y 6 43.006 -4.53 -61.703 1 78.66 ? H52 D10 1207 B 1 
HETATM 22 H H61 D10 . . . Y 6 44.581 -5.868 -63.638 1 93.6 ? H61 D10 1207 B 1 
HETATM 23 H H62 D10 . . . Y 6 45.194 -5.186 -62.347 1 93.6 ? H62 D10 1207 B 1 
HETATM 24 H H71 D10 . . . Y 6 45.097 -7.403 -61.922 1 96.74 ? H71 D10 1207 B 1 
HETATM 25 H H72 D10 . . . Y 6 43.996 -6.721 -61.012 1 96.74 ? H72 D10 1207 B 1 
HETATM 26 H H81 D10 . . . Y 6 42.305 -7.474 -62.392 1 99.89 ? H81 D10 1207 B 1 
HETATM 27 H H82 D10 . . . Y 6 43.352 -8.007 -63.453 1 99.89 ? H82 D10 1207 B 1 
HETATM 28 H H91 D10 . . . Y 6 43.147 -9.045 -60.822 1 101.93 ? H91 D10 1207 B 1 
HETATM 29 H H92 D10 . . . Y 6 44.111 -9.615 -61.946 1 101.93 ? H92 D10 1207 B 1 
HETATM 30 H H101 D10 . . . Y 6 42.262 -11.007 -61.7 1 106.31 ? H101 D10 1207 B 1 
HETATM 31 H H102 D10 . . . Y 6 42.256 -10.374 -63.157 1 106.31 ? H102 D10 1207 B 1 
HETATM 32 H H103 D10 . . . Y 6 41.288 -9.799 -62.037 1 106.31 ? H103 D10 1207 B 1 
#
_model_server_stats.io_time_ms              60 
_model_server_stats.parse_time_ms           17 
_model_server_stats.create_model_time_ms    57 
_model_server_stats.query_time_ms           342 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           32 
#