data_6ZOD # _model_server_result.job_id gPnuKNrSQ2XWwZYmUSgkxA _model_server_result.datetime_utc '2024-11-04 20:19:47' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6zod # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"QA","auth_seq_id":1309}' # _entry.id 6ZOD # _exptl.entry_id 6ZOD _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 86.175 _entity.id 13 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description HEXANE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6ZOD _cell.length_a 145.985 _cell.length_b 166.129 _cell.length_c 243.683 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6ZOD _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details pentameric _pdbx_struct_assembly.oligomeric_count 5 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA,VA,WA,XA,YA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 13 _struct_asym.id QA _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C6 H14' _chem_comp.formula_weight 86.175 _chem_comp.id HEX _chem_comp.mon_nstd_flag . _chem_comp.name HEXANE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 HEX sing 362 n n C1 H11 HEX sing 363 n n C1 H12 HEX sing 364 n n C1 H13 HEX sing 365 n n C2 C3 HEX sing 366 n n C2 H21 HEX sing 367 n n C2 H22 HEX sing 368 n n C3 C4 HEX sing 369 n n C3 H31 HEX sing 370 n n C3 H32 HEX sing 371 n n C4 C5 HEX sing 372 n n C4 H41 HEX sing 373 n n C4 H42 HEX sing 374 n n C5 C6 HEX sing 375 n n C5 H51 HEX sing 376 n n C5 H52 HEX sing 377 n n C6 H61 HEX sing 378 n n C6 H62 HEX sing 379 n n C6 H63 HEX sing 380 n n # _atom_sites.entry_id 6ZOD _atom_sites.fract_transf_matrix[1][1] 0.00685 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006019 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004104 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code F 3 LMT A 1 1101 1101 LMT LMT . G 4 EDO A 1 1102 1201 EDO EDO . H 3 LMT A 1 1103 1401 LMT LMT . I 4 EDO A 1 1104 1601 EDO EDO . J 5 GOL A 1 1105 1701 GOL GOL . K 4 EDO A 1 1106 2501 EDO EDO . L 6 D10 A 1 1107 3001 D10 D10 . M 4 EDO A 1 1108 3101 EDO EDO . N 4 EDO A 1 1109 3201 EDO EDO . O 4 EDO A 1 1110 3301 EDO EDO . P 3 LMT A 1 1111 3401 LMT LMT . Q 3 LMT A 1 1112 1501 LMT LMT . R 7 FUA A 1 1113 3 FUA FUA . S 4 EDO B 1 1201 1201 EDO EDO . T 5 GOL B 1 1202 1601 GOL GOL . U 4 EDO B 1 1203 1701 EDO EDO . V 8 PGE B 1 1204 1801 PGE PGE . W 4 EDO B 1 1205 2201 EDO EDO . X 4 EDO B 1 1206 2301 EDO EDO . Y 6 D10 B 1 1207 2601 D10 D10 . Z 9 8K6 B 1 1208 2701 8K6 8K6 . AA 10 SO4 B 1 1209 3 SO4 SO4 . BA 10 SO4 B 1 1210 4 SO4 SO4 . CA 10 SO4 B 1 1211 5 SO4 SO4 . DA 10 SO4 B 1 1212 6 SO4 SO4 . EA 7 FUA B 1 1213 1 FUA FUA . FA 7 FUA B 1 1214 4 FUA FUA . GA 7 FUA B 1 1215 1 FUA FUA . HA 4 EDO B 1 1216 1 EDO EDO . IA 4 EDO C 1 1301 1301 EDO EDO . JA 3 LMT C 1 1302 1101 LMT LMT . KA 11 PTY C 1 1303 1801 PTY PTY . LA 4 EDO C 1 1304 1901 EDO EDO . MA 3 LMT C 1 1305 2101 LMT LMT . NA 3 LMT C 1 1306 2401 LMT LMT . OA 11 PTY C 1 1307 2601 PTY PTY . PA 12 D12 C 1 1308 2701 D12 D12 . QA 13 HEX C 1 1309 2901 HEX HEX . RA 10 SO4 C 1 1310 1 SO4 SO4 . SA 4 EDO D 1 201 201 EDO EDO . TA 4 EDO D 1 202 301 EDO EDO . UA 14 HOH A 1 1201 32 HOH HOH . UA 14 HOH A 2 1202 2 HOH HOH . UA 14 HOH A 3 1203 29 HOH HOH . UA 14 HOH A 4 1204 180 HOH HOH . UA 14 HOH A 5 1205 72 HOH HOH . UA 14 HOH A 6 1206 39 HOH HOH . UA 14 HOH A 7 1207 98 HOH HOH . UA 14 HOH A 8 1208 173 HOH HOH . UA 14 HOH A 9 1209 97 HOH HOH . UA 14 HOH A 10 1210 36 HOH HOH . UA 14 HOH A 11 1211 93 HOH HOH . UA 14 HOH A 12 1212 171 HOH HOH . UA 14 HOH A 13 1213 139 HOH HOH . UA 14 HOH A 14 1214 174 HOH HOH . UA 14 HOH A 15 1215 23 HOH HOH . UA 14 HOH A 16 1216 68 HOH HOH . UA 14 HOH A 17 1217 94 HOH HOH . UA 14 HOH A 18 1218 181 HOH HOH . UA 14 HOH A 19 1219 34 HOH HOH . UA 14 HOH A 20 1220 115 HOH HOH . UA 14 HOH A 21 1221 159 HOH HOH . UA 14 HOH A 22 1222 140 HOH HOH . UA 14 HOH A 23 1223 172 HOH HOH . UA 14 HOH A 24 1224 153 HOH HOH . UA 14 HOH A 25 1225 13 HOH HOH . UA 14 HOH A 26 1226 35 HOH HOH . UA 14 HOH A 27 1227 41 HOH HOH . UA 14 HOH A 28 1228 25 HOH HOH . UA 14 HOH A 29 1229 40 HOH HOH . UA 14 HOH A 30 1230 179 HOH HOH . UA 14 HOH A 31 1231 4 HOH HOH . UA 14 HOH A 32 1232 176 HOH HOH . UA 14 HOH A 33 1233 14 HOH HOH . UA 14 HOH A 34 1234 178 HOH HOH . UA 14 HOH A 35 1235 3 HOH HOH . UA 14 HOH A 36 1236 177 HOH HOH . UA 14 HOH A 37 1237 24 HOH HOH . UA 14 HOH A 38 1238 16 HOH HOH . UA 14 HOH A 39 1239 182 HOH HOH . UA 14 HOH A 40 1240 175 HOH HOH . UA 14 HOH A 41 1241 149 HOH HOH . UA 14 HOH A 42 1242 92 HOH HOH . UA 14 HOH A 43 1243 96 HOH HOH . UA 14 HOH A 44 1244 28 HOH HOH . UA 14 HOH A 45 1245 69 HOH HOH . UA 14 HOH A 46 1246 31 HOH HOH . UA 14 HOH A 47 1247 183 HOH HOH . UA 14 HOH A 48 1248 26 HOH HOH . UA 14 HOH A 49 1249 127 HOH HOH . UA 14 HOH A 50 1250 185 HOH HOH . UA 14 HOH A 51 1251 154 HOH HOH . UA 14 HOH A 52 1252 186 HOH HOH . UA 14 HOH A 53 1253 100 HOH HOH . UA 14 HOH A 54 1254 95 HOH HOH . VA 14 HOH B 1 1301 109 HOH HOH . VA 14 HOH B 2 1302 50 HOH HOH . VA 14 HOH B 3 1303 17 HOH HOH . VA 14 HOH B 4 1304 129 HOH HOH . VA 14 HOH B 5 1305 190 HOH HOH . VA 14 HOH B 6 1306 193 HOH HOH . VA 14 HOH B 7 1307 160 HOH HOH . VA 14 HOH B 8 1308 125 HOH HOH . VA 14 HOH B 9 1309 57 HOH HOH . VA 14 HOH B 10 1310 8 HOH HOH . VA 14 HOH B 11 1311 48 HOH HOH . VA 14 HOH B 12 1312 124 HOH HOH . VA 14 HOH B 13 1313 195 HOH HOH . VA 14 HOH B 14 1314 107 HOH HOH . VA 14 HOH B 15 1315 164 HOH HOH . VA 14 HOH B 16 1316 106 HOH HOH . VA 14 HOH B 17 1317 130 HOH HOH . VA 14 HOH B 18 1318 119 HOH HOH . VA 14 HOH B 19 1319 126 HOH HOH . VA 14 HOH B 20 1320 157 HOH HOH . VA 14 HOH B 21 1321 184 HOH HOH . VA 14 HOH B 22 1322 158 HOH HOH . VA 14 HOH B 23 1323 47 HOH HOH . VA 14 HOH B 24 1324 46 HOH HOH . VA 14 HOH B 25 1325 9 HOH HOH . VA 14 HOH B 26 1326 54 HOH HOH . VA 14 HOH B 27 1327 192 HOH HOH . VA 14 HOH B 28 1328 196 HOH HOH . VA 14 HOH B 29 1329 49 HOH HOH . VA 14 HOH B 30 1330 122 HOH HOH . VA 14 HOH B 31 1331 108 HOH HOH . VA 14 HOH B 32 1332 189 HOH HOH . VA 14 HOH B 33 1333 131 HOH HOH . VA 14 HOH B 34 1334 104 HOH HOH . VA 14 HOH B 35 1335 128 HOH HOH . VA 14 HOH B 36 1336 123 HOH HOH . VA 14 HOH B 37 1337 162 HOH HOH . VA 14 HOH B 38 1338 163 HOH HOH . VA 14 HOH B 39 1339 102 HOH HOH . VA 14 HOH B 40 1340 120 HOH HOH . VA 14 HOH B 41 1341 188 HOH HOH . VA 14 HOH B 42 1342 191 HOH HOH . VA 14 HOH B 43 1343 105 HOH HOH . VA 14 HOH B 44 1344 197 HOH HOH . VA 14 HOH B 45 1345 161 HOH HOH . WA 14 HOH C 1 1401 6 HOH HOH . WA 14 HOH C 2 1402 110 HOH HOH . WA 14 HOH C 3 1403 73 HOH HOH . WA 14 HOH C 4 1404 58 HOH HOH . WA 14 HOH C 5 1405 21 HOH HOH . WA 14 HOH C 6 1406 27 HOH HOH . WA 14 HOH C 7 1407 137 HOH HOH . WA 14 HOH C 8 1408 118 HOH HOH . WA 14 HOH C 9 1409 78 HOH HOH . WA 14 HOH C 10 1410 165 HOH HOH . WA 14 HOH C 11 1411 147 HOH HOH . WA 14 HOH C 12 1412 145 HOH HOH . WA 14 HOH C 13 1413 76 HOH HOH . WA 14 HOH C 14 1414 43 HOH HOH . WA 14 HOH C 15 1415 116 HOH HOH . WA 14 HOH C 16 1416 60 HOH HOH . WA 14 HOH C 17 1417 166 HOH HOH . WA 14 HOH C 18 1418 71 HOH HOH . WA 14 HOH C 19 1419 111 HOH HOH . WA 14 HOH C 20 1420 81 HOH HOH . WA 14 HOH C 21 1421 143 HOH HOH . WA 14 HOH C 22 1422 62 HOH HOH . WA 14 HOH C 23 1423 61 HOH HOH . WA 14 HOH C 24 1424 199 HOH HOH . WA 14 HOH C 25 1425 79 HOH HOH . WA 14 HOH C 26 1426 70 HOH HOH . WA 14 HOH C 27 1427 146 HOH HOH . WA 14 HOH C 28 1428 75 HOH HOH . WA 14 HOH C 29 1429 167 HOH HOH . WA 14 HOH C 30 1430 22 HOH HOH . WA 14 HOH C 31 1431 5 HOH HOH . WA 14 HOH C 32 1432 169 HOH HOH . WA 14 HOH C 33 1433 134 HOH HOH . WA 14 HOH C 34 1434 200 HOH HOH . WA 14 HOH C 35 1435 91 HOH HOH . WA 14 HOH C 36 1436 90 HOH HOH . WA 14 HOH C 37 1437 144 HOH HOH . WA 14 HOH C 38 1438 89 HOH HOH . WA 14 HOH C 39 1439 117 HOH HOH . WA 14 HOH C 40 1440 170 HOH HOH . WA 14 HOH C 41 1441 99 HOH HOH . WA 14 HOH C 42 1442 198 HOH HOH . WA 14 HOH C 43 1443 168 HOH HOH . WA 14 HOH C 44 1444 88 HOH HOH . WA 14 HOH C 45 1445 112 HOH HOH . XA 14 HOH D 1 301 86 HOH HOH . XA 14 HOH D 2 302 82 HOH HOH . XA 14 HOH D 3 303 194 HOH HOH . YA 14 HOH E 1 201 187 HOH HOH . YA 14 HOH E 2 202 136 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 HEX . . . QA 13 52.864 -3.754 -46.145 1 91.55 ? C1 HEX 1309 C 1 HETATM 2 C C2 HEX . . . QA 13 53.706 -4.916 -46.602 1 93.79 ? C2 HEX 1309 C 1 HETATM 3 C C3 HEX . . . QA 13 52.957 -6.223 -46.71 1 88.26 ? C3 HEX 1309 C 1 HETATM 4 C C4 HEX . . . QA 13 53.892 -7.314 -47.158 1 80.9 ? C4 HEX 1309 C 1 HETATM 5 C C5 HEX . . . QA 13 53.27 -8.503 -47.828 1 83.14 ? C5 HEX 1309 C 1 HETATM 6 C C6 HEX . . . QA 13 52.828 -9.566 -46.855 1 87.2 ? C6 HEX 1309 C 1 HETATM 7 H H11 HEX . . . QA 13 53.33 -3.27 -45.441 1 109.85 ? H11 HEX 1309 C 1 HETATM 8 H H12 HEX . . . QA 13 52.014 -4.082 -45.804 1 109.85 ? H12 HEX 1309 C 1 HETATM 9 H H13 HEX . . . QA 13 52.701 -3.155 -46.895 1 109.85 ? H13 HEX 1309 C 1 HETATM 10 H H21 HEX . . . QA 13 54.45 -5.033 -45.972 1 112.55 ? H21 HEX 1309 C 1 HETATM 11 H H22 HEX . . . QA 13 54.089 -4.701 -47.48 1 112.55 ? H22 HEX 1309 C 1 HETATM 12 H H31 HEX . . . QA 13 52.221 -6.131 -47.352 1 105.91 ? H31 HEX 1309 C 1 HETATM 13 H H32 HEX . . . QA 13 52.567 -6.455 -45.84 1 105.91 ? H32 HEX 1309 C 1 HETATM 14 H H41 HEX . . . QA 13 54.387 -7.633 -46.373 1 97.08 ? H41 HEX 1309 C 1 HETATM 15 H H42 HEX . . . QA 13 54.542 -6.922 -47.78 1 97.08 ? H42 HEX 1309 C 1 HETATM 16 H H51 HEX . . . QA 13 53.919 -8.892 -48.453 1 99.77 ? H51 HEX 1309 C 1 HETATM 17 H H52 HEX . . . QA 13 52.494 -8.204 -48.349 1 99.77 ? H52 HEX 1309 C 1 HETATM 18 H H61 HEX . . . QA 13 53.148 -9.344 -45.963 1 104.64 ? H61 HEX 1309 C 1 HETATM 19 H H62 HEX . . . QA 13 53.194 -10.426 -47.125 1 104.64 ? H62 HEX 1309 C 1 HETATM 20 H H63 HEX . . . QA 13 51.857 -9.616 -46.847 1 104.64 ? H63 HEX 1309 C 1 # _model_server_stats.io_time_ms 44 _model_server_stats.parse_time_ms 15 _model_server_stats.create_model_time_ms 35 _model_server_stats.query_time_ms 293 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 20 #