data_6ZOF # _model_server_result.job_id pXb3GdKA2zdIfNBdRL5hsg _model_server_result.datetime_utc '2024-11-05 10:31:10' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6zof # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"J","auth_seq_id":1102}' # _entry.id 6ZOF # _exptl.entry_id 6ZOF _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 201.349 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description DECYLAMINE-N,N-DIMETHYL-N-OXIDE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6ZOF _cell.length_a 145.1 _cell.length_b 162.327 _cell.length_c 244.852 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6ZOF _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details pentameric _pdbx_struct_assembly.oligomeric_count 5 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 6 _struct_asym.id J _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C12 H27 N O' _chem_comp.formula_weight 201.349 _chem_comp.id DDQ _chem_comp.mon_nstd_flag . _chem_comp.name DECYLAMINE-N,N-DIMETHYL-N-OXIDE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 O1 DDQ sing 114 n n N1 CM1 DDQ sing 115 n n N1 CM2 DDQ sing 116 n n N1 C1 DDQ sing 117 n n CM1 HM11 DDQ sing 118 n n CM1 HM12 DDQ sing 119 n n CM1 HM13 DDQ sing 120 n n CM2 HM21 DDQ sing 121 n n CM2 HM22 DDQ sing 122 n n CM2 HM23 DDQ sing 123 n n C1 C2 DDQ sing 124 n n C1 H11 DDQ sing 125 n n C1 H12 DDQ sing 126 n n C2 C3 DDQ sing 127 n n C2 H21 DDQ sing 128 n n C2 H22 DDQ sing 129 n n C3 C4 DDQ sing 130 n n C3 H31 DDQ sing 131 n n C3 H32 DDQ sing 132 n n C4 C5 DDQ sing 133 n n C4 H41 DDQ sing 134 n n C4 H42 DDQ sing 135 n n C5 C6 DDQ sing 136 n n C5 H51 DDQ sing 137 n n C5 H52 DDQ sing 138 n n C6 C7 DDQ sing 139 n n C6 H61 DDQ sing 140 n n C6 H62 DDQ sing 141 n n C7 C8 DDQ sing 142 n n C7 H71 DDQ sing 143 n n C7 H72 DDQ sing 144 n n C8 C9 DDQ sing 145 n n C8 H81 DDQ sing 146 n n C8 H82 DDQ sing 147 n n C9 C10 DDQ sing 148 n n C9 H91 DDQ sing 149 n n C9 H92 DDQ sing 150 n n C10 H101 DDQ sing 151 n n C10 H102 DDQ sing 152 n n C10 H103 DDQ sing 153 n n # _atom_sites.entry_id 6ZOF _atom_sites.fract_transf_matrix[1][1] 0.006892 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.00616 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004084 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code F 3 LMT A 1 1101 5 LMT LMT . G 3 LMT A 1 1102 6 LMT LMT . H 4 SO4 A 1 1103 1 SO4 SO4 . I 5 D10 B 1 1101 1101 D10 D10 . J 6 DDQ B 1 1102 1201 DDQ DDQ . K 7 GOL B 1 1103 1301 GOL GOL . L 8 FUA B 1 1104 1401 FUA FUA . M 9 R16 B 1 1105 1201 R16 R16 . N 3 LMT B 1 1106 4 LMT LMT . O 3 LMT B 1 1107 7 LMT LMT . P 10 PTY C 1 1101 1101 PTY PTY . Q 3 LMT C 1 1102 3 LMT LMT . R 4 SO4 C 1 1103 2 SO4 SO4 . S 11 HOH A 1 1201 15 HOH HOH . S 11 HOH A 2 1202 10 HOH HOH . S 11 HOH A 3 1203 3 HOH HOH . S 11 HOH A 4 1204 22 HOH HOH . S 11 HOH A 5 1205 12 HOH HOH . T 11 HOH B 1 1201 18 HOH HOH . T 11 HOH B 2 1202 1 HOH HOH . T 11 HOH B 3 1203 8 HOH HOH . T 11 HOH B 4 1204 16 HOH HOH . T 11 HOH B 5 1205 17 HOH HOH . T 11 HOH B 6 1206 19 HOH HOH . T 11 HOH B 7 1207 20 HOH HOH . T 11 HOH B 8 1208 6 HOH HOH . T 11 HOH B 9 1209 21 HOH HOH . U 11 HOH C 1 1201 14 HOH HOH . U 11 HOH C 2 1202 9 HOH HOH . U 11 HOH C 3 1203 13 HOH HOH . U 11 HOH C 4 1204 5 HOH HOH . U 11 HOH C 5 1205 2 HOH HOH . U 11 HOH C 6 1206 11 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 DDQ . . . J 6 28.65 3.645 -65.52 1 73.78 ? N1 DDQ 1102 B 1 HETATM 2 O O1 DDQ . . . J 6 28.043 4.736 -66.171 1 74.36 ? O1 DDQ 1102 B 1 HETATM 3 C CM1 DDQ . . . J 6 29.733 4.171 -64.64 1 73.46 ? CM1 DDQ 1102 B 1 HETATM 4 C CM2 DDQ . . . J 6 29.23 2.745 -66.56 1 73.49 ? CM2 DDQ 1102 B 1 HETATM 5 C C1 DDQ . . . J 6 27.596 2.939 -64.707 1 72.99 ? C1 DDQ 1102 B 1 HETATM 6 C C2 DDQ . . . J 6 27.972 1.537 -64.263 1 71.79 ? C2 DDQ 1102 B 1 HETATM 7 C C3 DDQ . . . J 6 26.914 0.895 -63.391 1 70.24 ? C3 DDQ 1102 B 1 HETATM 8 C C4 DDQ . . . J 6 27.283 -0.49 -62.913 1 68.74 ? C4 DDQ 1102 B 1 HETATM 9 C C5 DDQ . . . J 6 26.394 -1.024 -61.817 1 67.56 ? C5 DDQ 1102 B 1 HETATM 10 C C6 DDQ . . . J 6 26.535 -2.504 -61.559 1 66.42 ? C6 DDQ 1102 B 1 HETATM 11 C C7 DDQ . . . J 6 25.574 -3.048 -60.525 1 65.66 ? C7 DDQ 1102 B 1 HETATM 12 C C8 DDQ . . . J 6 26.213 -3.399 -59.201 1 65.23 ? C8 DDQ 1102 B 1 HETATM 13 C C9 DDQ . . . J 6 25.248 -3.889 -58.148 1 64.66 ? C9 DDQ 1102 B 1 HETATM 14 C C10 DDQ . . . J 6 25.594 -3.45 -56.744 1 64.12 ? C10 DDQ 1102 B 1 # _model_server_stats.io_time_ms 17 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 31 _model_server_stats.query_time_ms 294 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 14 #