data_6ZOG # _model_server_result.job_id crV_--N3uUN5oErP1fWtRw _model_server_result.datetime_utc '2025-03-04 08:28:53' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6zog # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"M","auth_seq_id":1102}' # _entry.id 6ZOG # _exptl.entry_id 6ZOG _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 400.592 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(2S)-3-hydroxypropane-1,2-diyl didecanoate' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6ZOG _cell.length_a 145.965 _cell.length_b 161.954 _cell.length_c 245.288 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6ZOG _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details pentameric _pdbx_struct_assembly.oligomeric_count 5 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 6 _struct_asym.id M _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C23 H44 O5' _chem_comp.formula_weight 400.592 _chem_comp.id DDR _chem_comp.mon_nstd_flag . _chem_comp.name '(2S)-3-hydroxypropane-1,2-diyl didecanoate' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 1,2-DIDECANOYL-SN-GLYCEROL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C30 C29 DDR sing 289 n n C29 C28 DDR sing 290 n n C8 C9 DDR sing 291 n n C8 C7 DDR sing 292 n n C10 C9 DDR sing 293 n n C28 C27 DDR sing 294 n n C7 C6 DDR sing 295 n n C6 C5 DDR sing 296 n n C27 C26 DDR sing 297 n n C5 C4 DDR sing 298 n n C26 C25 DDR sing 299 n n C4 C3 DDR sing 300 n n C25 C24 DDR sing 301 n n C3 C2 DDR sing 302 n n C2 C1 DDR sing 303 n n C24 C23 DDR sing 304 n n C23 C22 DDR sing 305 n n C1 O1 DDR doub 306 n n C1 O51 DDR sing 307 n n O21 C21 DDR doub 308 n n C22 C21 DDR sing 309 n n O51 C51 DDR sing 310 n n C21 O52 DDR sing 311 n n O52 C52 DDR sing 312 n n C51 C52 DDR sing 313 n n C52 C53 DDR sing 314 n n C53 O53 DDR sing 315 n n C22 H221 DDR sing 316 n n C22 H222 DDR sing 317 n n C23 H231 DDR sing 318 n n C23 H232 DDR sing 319 n n C24 H241 DDR sing 320 n n C24 H242 DDR sing 321 n n C25 H251 DDR sing 322 n n C25 H252 DDR sing 323 n n C26 H261 DDR sing 324 n n C26 H262 DDR sing 325 n n C27 H271 DDR sing 326 n n C27 H272 DDR sing 327 n n C28 H281 DDR sing 328 n n C28 H282 DDR sing 329 n n C29 H291 DDR sing 330 n n C29 H292 DDR sing 331 n n C30 H301 DDR sing 332 n n C30 H302 DDR sing 333 n n C30 H303 DDR sing 334 n n C52 H52 DDR sing 335 n n C53 H531 DDR sing 336 n n C53 H532 DDR sing 337 n n O53 HO53 DDR sing 338 n n C51 H511 DDR sing 339 n n C51 H512 DDR sing 340 n n C2 H21 DDR sing 341 n n C2 H22 DDR sing 342 n n C3 H31 DDR sing 343 n n C3 H32 DDR sing 344 n n C4 H41 DDR sing 345 n n C4 H42 DDR sing 346 n n C5 H51 DDR sing 347 n n C5 H52A DDR sing 348 n n C6 H61 DDR sing 349 n n C6 H62 DDR sing 350 n n C7 H71 DDR sing 351 n n C7 H72 DDR sing 352 n n C8 H81 DDR sing 353 n n C8 H82 DDR sing 354 n n C9 H91 DDR sing 355 n n C9 H92 DDR sing 356 n n C10 H101 DDR sing 357 n n C10 H102 DDR sing 358 n n C10 H103 DDR sing 359 n n # _atom_sites.entry_id 6ZOG _atom_sites.fract_transf_matrix[1][1] 0.006851 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006175 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004077 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code F 3 LMT A 1 1101 1101 LMT LMT . G 4 D10 A 1 1102 1201 D10 D10 . H 3 LMT A 1 1103 1401 LMT LMT . I 5 EDO A 1 1104 1501 EDO EDO . J 3 LMT A 1 1105 1801 LMT LMT . K 3 LMT A 1 1106 1401 LMT LMT . L 3 LMT B 1 1101 1101 LMT LMT . M 6 DDR B 1 1102 1201 DDR DDR . N 7 MYS B 1 1103 1301 MYS MYS . O 8 8K6 B 1 1104 1401 8K6 8K6 . P 9 MIY B 1 1105 1501 MIY MIY . Q 10 GOL B 1 1106 1601 GOL GOL . R 11 OCT B 1 1107 1701 OCT OCT . S 5 EDO B 1 1108 2001 EDO EDO . T 12 SO4 B 1 1109 2 SO4 SO4 . U 12 SO4 B 1 1110 3 SO4 SO4 . V 13 D12 C 1 1301 1301 D12 D12 . W 3 LMT C 1 1302 1101 LMT LMT . X 4 D10 C 1 1303 1201 D10 D10 . Y 14 PTY C 1 1304 1301 PTY PTY . Z 15 C14 C 1 1305 1501 C14 C14 . AA 5 EDO C 1 1306 1601 EDO EDO . BA 5 EDO C 1 1307 1801 EDO EDO . CA 10 GOL C 1 1308 1901 GOL GOL . DA 10 GOL C 1 1309 2001 GOL GOL . EA 10 GOL C 1 1310 2101 GOL GOL . FA 16 DDQ C 1 1311 2201 DDQ DDQ . GA 12 SO4 C 1 1312 1 SO4 SO4 . HA 10 GOL D 1 201 201 GOL GOL . IA 5 EDO E 1 201 201 EDO EDO . JA 5 EDO E 1 202 301 EDO EDO . KA 17 HOH A 1 1201 34 HOH HOH . KA 17 HOH A 2 1202 88 HOH HOH . KA 17 HOH A 3 1203 92 HOH HOH . KA 17 HOH A 4 1204 10 HOH HOH . KA 17 HOH A 5 1205 43 HOH HOH . KA 17 HOH A 6 1206 63 HOH HOH . KA 17 HOH A 7 1207 89 HOH HOH . KA 17 HOH A 8 1208 100 HOH HOH . KA 17 HOH A 9 1209 42 HOH HOH . KA 17 HOH A 10 1210 41 HOH HOH . KA 17 HOH A 11 1211 9 HOH HOH . KA 17 HOH A 12 1212 126 HOH HOH . KA 17 HOH A 13 1213 82 HOH HOH . KA 17 HOH A 14 1214 77 HOH HOH . KA 17 HOH A 15 1215 67 HOH HOH . KA 17 HOH A 16 1216 83 HOH HOH . KA 17 HOH A 17 1217 66 HOH HOH . KA 17 HOH A 18 1218 24 HOH HOH . KA 17 HOH A 19 1219 99 HOH HOH . KA 17 HOH A 20 1220 46 HOH HOH . KA 17 HOH A 21 1221 85 HOH HOH . KA 17 HOH A 22 1222 1 HOH HOH . KA 17 HOH A 23 1223 78 HOH HOH . KA 17 HOH A 24 1224 101 HOH HOH . KA 17 HOH A 25 1225 14 HOH HOH . KA 17 HOH A 26 1226 79 HOH HOH . KA 17 HOH A 27 1227 75 HOH HOH . KA 17 HOH A 28 1228 16 HOH HOH . KA 17 HOH A 29 1229 57 HOH HOH . KA 17 HOH A 30 1230 61 HOH HOH . KA 17 HOH A 31 1231 76 HOH HOH . KA 17 HOH A 32 1232 86 HOH HOH . KA 17 HOH A 33 1233 102 HOH HOH . KA 17 HOH A 34 1234 40 HOH HOH . KA 17 HOH A 35 1235 65 HOH HOH . KA 17 HOH A 36 1236 94 HOH HOH . KA 17 HOH A 37 1237 62 HOH HOH . KA 17 HOH A 38 1238 7 HOH HOH . KA 17 HOH A 39 1239 52 HOH HOH . KA 17 HOH A 40 1240 87 HOH HOH . KA 17 HOH A 41 1241 38 HOH HOH . KA 17 HOH A 42 1242 81 HOH HOH . KA 17 HOH A 43 1243 68 HOH HOH . KA 17 HOH A 44 1244 39 HOH HOH . KA 17 HOH A 45 1245 80 HOH HOH . KA 17 HOH A 46 1246 56 HOH HOH . KA 17 HOH A 47 1247 50 HOH HOH . KA 17 HOH A 48 1248 33 HOH HOH . KA 17 HOH A 49 1249 91 HOH HOH . LA 17 HOH B 1 1201 112 HOH HOH . LA 17 HOH B 2 1202 64 HOH HOH . LA 17 HOH B 3 1203 111 HOH HOH . LA 17 HOH B 4 1204 93 HOH HOH . LA 17 HOH B 5 1205 12 HOH HOH . LA 17 HOH B 6 1206 103 HOH HOH . LA 17 HOH B 7 1207 114 HOH HOH . LA 17 HOH B 8 1208 110 HOH HOH . LA 17 HOH B 9 1209 6 HOH HOH . LA 17 HOH B 10 1210 135 HOH HOH . LA 17 HOH B 11 1211 113 HOH HOH . LA 17 HOH B 12 1212 11 HOH HOH . LA 17 HOH B 13 1213 5 HOH HOH . LA 17 HOH B 14 1214 22 HOH HOH . LA 17 HOH B 15 1215 55 HOH HOH . LA 17 HOH B 16 1216 8 HOH HOH . LA 17 HOH B 17 1217 20 HOH HOH . LA 17 HOH B 18 1218 115 HOH HOH . LA 17 HOH B 19 1219 44 HOH HOH . LA 17 HOH B 20 1220 104 HOH HOH . LA 17 HOH B 21 1221 121 HOH HOH . LA 17 HOH B 22 1222 109 HOH HOH . LA 17 HOH B 23 1223 70 HOH HOH . LA 17 HOH B 24 1224 53 HOH HOH . LA 17 HOH B 25 1225 123 HOH HOH . LA 17 HOH B 26 1226 120 HOH HOH . LA 17 HOH B 27 1227 116 HOH HOH . LA 17 HOH B 28 1228 45 HOH HOH . LA 17 HOH B 29 1229 90 HOH HOH . LA 17 HOH B 30 1230 72 HOH HOH . LA 17 HOH B 31 1231 49 HOH HOH . LA 17 HOH B 32 1232 117 HOH HOH . LA 17 HOH B 33 1233 51 HOH HOH . LA 17 HOH B 34 1234 105 HOH HOH . LA 17 HOH B 35 1235 122 HOH HOH . MA 17 HOH C 1 1401 30 HOH HOH . MA 17 HOH C 2 1402 98 HOH HOH . MA 17 HOH C 3 1403 125 HOH HOH . MA 17 HOH C 4 1404 59 HOH HOH . MA 17 HOH C 5 1405 36 HOH HOH . MA 17 HOH C 6 1406 28 HOH HOH . MA 17 HOH C 7 1407 2 HOH HOH . MA 17 HOH C 8 1408 130 HOH HOH . MA 17 HOH C 9 1409 124 HOH HOH . MA 17 HOH C 10 1410 18 HOH HOH . MA 17 HOH C 11 1411 17 HOH HOH . MA 17 HOH C 12 1412 106 HOH HOH . MA 17 HOH C 13 1413 13 HOH HOH . MA 17 HOH C 14 1414 29 HOH HOH . MA 17 HOH C 15 1415 21 HOH HOH . MA 17 HOH C 16 1416 27 HOH HOH . MA 17 HOH C 17 1417 95 HOH HOH . MA 17 HOH C 18 1418 132 HOH HOH . MA 17 HOH C 19 1419 96 HOH HOH . MA 17 HOH C 20 1420 26 HOH HOH . MA 17 HOH C 21 1421 128 HOH HOH . MA 17 HOH C 22 1422 69 HOH HOH . MA 17 HOH C 23 1423 32 HOH HOH . MA 17 HOH C 24 1424 15 HOH HOH . MA 17 HOH C 25 1425 23 HOH HOH . MA 17 HOH C 26 1426 71 HOH HOH . MA 17 HOH C 27 1427 58 HOH HOH . MA 17 HOH C 28 1428 127 HOH HOH . MA 17 HOH C 29 1429 107 HOH HOH . MA 17 HOH C 30 1430 37 HOH HOH . MA 17 HOH C 31 1431 134 HOH HOH . MA 17 HOH C 32 1432 74 HOH HOH . MA 17 HOH C 33 1433 131 HOH HOH . MA 17 HOH C 34 1434 97 HOH HOH . MA 17 HOH C 35 1435 31 HOH HOH . MA 17 HOH C 36 1436 108 HOH HOH . MA 17 HOH C 37 1437 25 HOH HOH . MA 17 HOH C 38 1438 35 HOH HOH . MA 17 HOH C 39 1439 54 HOH HOH . MA 17 HOH C 40 1440 129 HOH HOH . MA 17 HOH C 41 1441 73 HOH HOH . MA 17 HOH C 42 1442 133 HOH HOH . MA 17 HOH C 43 1443 60 HOH HOH . NA 17 HOH D 1 301 118 HOH HOH . NA 17 HOH D 2 302 84 HOH HOH . NA 17 HOH D 3 303 48 HOH HOH . NA 17 HOH D 4 304 119 HOH HOH . NA 17 HOH D 5 305 47 HOH HOH . OA 17 HOH E 1 301 3 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O21 DDR . . . M 6 16.754 -26.776 -57.689 1 92.9 ? O21 DDR 1102 B 1 HETATM 2 C C21 DDR . . . M 6 17.583 -26.057 -58.184 1 92.04 ? C21 DDR 1102 B 1 HETATM 3 C C22 DDR . . . M 6 17.418 -25.352 -59.502 1 91.7 ? C22 DDR 1102 B 1 HETATM 4 C C23 DDR . . . M 6 16.311 -24.339 -59.505 1 91.66 ? C23 DDR 1102 B 1 HETATM 5 C C24 DDR . . . M 6 15.476 -24.374 -60.775 1 92.18 ? C24 DDR 1102 B 1 HETATM 6 C C25 DDR . . . M 6 14.136 -23.689 -60.654 1 92.76 ? C25 DDR 1102 B 1 HETATM 7 C C26 DDR . . . M 6 14.211 -22.183 -60.59 1 93.59 ? C26 DDR 1102 B 1 HETATM 8 C C27 DDR . . . M 6 12.889 -21.509 -60.318 1 94.29 ? C27 DDR 1102 B 1 HETATM 9 C C28 DDR . . . M 6 12.031 -21.305 -61.545 1 94.62 ? C28 DDR 1102 B 1 HETATM 10 C C29 DDR . . . M 6 10.543 -21.333 -61.29 1 94.68 ? C29 DDR 1102 B 1 HETATM 11 C C30 DDR . . . M 6 9.767 -20.327 -62.105 1 94.46 ? C30 DDR 1102 B 1 HETATM 12 O O52 DDR . . . M 6 18.769 -25.817 -57.599 1 91.13 ? O52 DDR 1102 B 1 HETATM 13 C C52 DDR . . . M 6 18.778 -25.219 -56.272 1 90.27 ? C52 DDR 1102 B 1 HETATM 14 C C53 DDR . . . M 6 19.579 -26.112 -55.351 1 90.74 ? C53 DDR 1102 B 1 HETATM 15 O O53 DDR . . . M 6 18.748 -27.083 -54.719 1 91.07 ? O53 DDR 1102 B 1 HETATM 16 C C51 DDR . . . M 6 19.33 -23.815 -56.379 1 89.54 ? C51 DDR 1102 B 1 HETATM 17 O O51 DDR . . . M 6 18.838 -23.036 -55.265 1 88.31 ? O51 DDR 1102 B 1 HETATM 18 C C1 DDR . . . M 6 19.062 -21.726 -55.318 1 87.17 ? C1 DDR 1102 B 1 HETATM 19 O O1 DDR . . . M 6 20.052 -21.206 -54.874 1 86.73 ? O1 DDR 1102 B 1 HETATM 20 C C2 DDR . . . M 6 17.935 -20.999 -55.996 1 86.86 ? C2 DDR 1102 B 1 HETATM 21 C C3 DDR . . . M 6 18.377 -20.163 -57.158 1 86.55 ? C3 DDR 1102 B 1 HETATM 22 C C4 DDR . . . M 6 17.26 -19.901 -58.156 1 86.59 ? C4 DDR 1102 B 1 HETATM 23 C C5 DDR . . . M 6 17.289 -18.524 -58.773 1 86.33 ? C5 DDR 1102 B 1 HETATM 24 C C6 DDR . . . M 6 16.174 -18.267 -59.758 1 86.16 ? C6 DDR 1102 B 1 HETATM 25 C C7 DDR . . . M 6 15.99 -16.814 -60.128 1 86.26 ? C7 DDR 1102 B 1 HETATM 26 C C8 DDR . . . M 6 16.757 -16.382 -61.354 1 86.44 ? C8 DDR 1102 B 1 HETATM 27 C C9 DDR . . . M 6 16.686 -14.904 -61.637 1 86.41 ? C9 DDR 1102 B 1 HETATM 28 C C10 DDR . . . M 6 17.324 -14.5 -62.945 1 86.28 ? C10 DDR 1102 B 1 # _model_server_stats.io_time_ms 20 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 41 _model_server_stats.query_time_ms 261 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 28 #