data_6ZOG # _model_server_result.job_id jXkJFdTXS_2JYha1Ced3NA _model_server_result.datetime_utc '2024-11-17 00:57:28' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6zog # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"P","auth_seq_id":1105}' # _entry.id 6ZOG # _exptl.entry_id 6ZOG _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 457.476 _entity.id 9 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(4S,4AS,5AR,12AS)-4,7-BIS(DIMETHYLAMINO)-3,10,12,12A-TETRAHYDROXY-1,11-DIOXO-1,4,4A,5,5A,6,11,12A-OCTAHYDROTETRACENE-2- CARBOXAMIDE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6ZOG _cell.length_a 145.965 _cell.length_b 161.954 _cell.length_c 245.288 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6ZOG _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details pentameric _pdbx_struct_assembly.oligomeric_count 5 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 9 _struct_asym.id P _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C23 H27 N3 O7' _chem_comp.formula_weight 457.476 _chem_comp.id MIY _chem_comp.mon_nstd_flag . _chem_comp.name '(4S,4AS,5AR,12AS)-4,7-BIS(DIMETHYLAMINO)-3,10,12,12A-TETRAHYDROXY-1,11-DIOXO-1,4,4A,5,5A,6,11,12A-OCTAHYDROTETRACENE-2- CARBOXAMIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms MINOCYCLINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O8 C21 MIY doub 618 n n C21 N2 MIY sing 619 n n C21 C2 MIY sing 620 n n N2 HN21 MIY sing 621 n n N2 HN22 MIY sing 622 n n C2 C1 MIY sing 623 n n C2 C3 MIY doub 624 n n C1 O1 MIY doub 625 n n C1 C18 MIY sing 626 n n C3 O2 MIY sing 627 n n C3 C4 MIY sing 628 n n O2 HO2 MIY sing 629 n n C4 N1 MIY sing 630 n n C4 C5 MIY sing 631 n n C4 H4 MIY sing 632 n n N1 C20 MIY sing 633 n n N1 C19 MIY sing 634 n n C20 H201 MIY sing 635 n n C20 H202 MIY sing 636 n n C20 H203 MIY sing 637 n n C19 H191 MIY sing 638 n n C19 H192 MIY sing 639 n n C19 H193 MIY sing 640 n n C5 C18 MIY sing 641 n n C5 C6 MIY sing 642 n n C5 H5 MIY sing 643 n n C18 O7 MIY sing 644 n n C18 C17 MIY sing 645 n n O7 HO7 MIY sing 646 n n C17 O6 MIY sing 647 n n C17 C16 MIY doub 648 n n O6 HO6 MIY sing 649 n n C16 C7 MIY sing 650 n n C16 C15 MIY sing 651 n n C7 C6 MIY sing 652 n n C7 C8 MIY sing 653 n n C7 H7 MIY sing 654 n n C6 H61 MIY sing 655 n n C6 H62 MIY sing 656 n n C15 O5 MIY doub 657 n n C15 C14 MIY sing 658 n n C14 C9 MIY doub 659 n y C14 C13 MIY sing 660 n y C9 C8 MIY sing 661 n n C9 C10 MIY sing 662 n y C8 H81 MIY sing 663 n n C8 H82 MIY sing 664 n n C13 O4 MIY sing 665 n n C13 C12 MIY doub 666 n y O4 HO4 MIY sing 667 n n C12 C11 MIY sing 668 n y C12 H12 MIY sing 669 n n C11 C10 MIY doub 670 n y C11 H11 MIY sing 671 n n C10 N7 MIY sing 672 n n N7 CN7 MIY sing 673 n n N7 C71 MIY sing 674 n n CN7 HN71 MIY sing 675 n n CN7 HN72 MIY sing 676 n n CN7 HN73 MIY sing 677 n n C71 H711 MIY sing 678 n n C71 H712 MIY sing 679 n n C71 H713 MIY sing 680 n n # _atom_sites.entry_id 6ZOG _atom_sites.fract_transf_matrix[1][1] 0.006851 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006175 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004077 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code F 3 LMT A 1 1101 1101 LMT LMT . G 4 D10 A 1 1102 1201 D10 D10 . H 3 LMT A 1 1103 1401 LMT LMT . I 5 EDO A 1 1104 1501 EDO EDO . J 3 LMT A 1 1105 1801 LMT LMT . K 3 LMT A 1 1106 1401 LMT LMT . L 3 LMT B 1 1101 1101 LMT LMT . M 6 DDR B 1 1102 1201 DDR DDR . N 7 MYS B 1 1103 1301 MYS MYS . O 8 8K6 B 1 1104 1401 8K6 8K6 . P 9 MIY B 1 1105 1501 MIY MIY . Q 10 GOL B 1 1106 1601 GOL GOL . R 11 OCT B 1 1107 1701 OCT OCT . S 5 EDO B 1 1108 2001 EDO EDO . T 12 SO4 B 1 1109 2 SO4 SO4 . U 12 SO4 B 1 1110 3 SO4 SO4 . V 13 D12 C 1 1301 1301 D12 D12 . W 3 LMT C 1 1302 1101 LMT LMT . X 4 D10 C 1 1303 1201 D10 D10 . Y 14 PTY C 1 1304 1301 PTY PTY . Z 15 C14 C 1 1305 1501 C14 C14 . AA 5 EDO C 1 1306 1601 EDO EDO . BA 5 EDO C 1 1307 1801 EDO EDO . CA 10 GOL C 1 1308 1901 GOL GOL . DA 10 GOL C 1 1309 2001 GOL GOL . EA 10 GOL C 1 1310 2101 GOL GOL . FA 16 DDQ C 1 1311 2201 DDQ DDQ . GA 12 SO4 C 1 1312 1 SO4 SO4 . HA 10 GOL D 1 201 201 GOL GOL . IA 5 EDO E 1 201 201 EDO EDO . JA 5 EDO E 1 202 301 EDO EDO . KA 17 HOH A 1 1201 34 HOH HOH . KA 17 HOH A 2 1202 88 HOH HOH . KA 17 HOH A 3 1203 92 HOH HOH . KA 17 HOH A 4 1204 10 HOH HOH . KA 17 HOH A 5 1205 43 HOH HOH . KA 17 HOH A 6 1206 63 HOH HOH . KA 17 HOH A 7 1207 89 HOH HOH . KA 17 HOH A 8 1208 100 HOH HOH . KA 17 HOH A 9 1209 42 HOH HOH . KA 17 HOH A 10 1210 41 HOH HOH . KA 17 HOH A 11 1211 9 HOH HOH . KA 17 HOH A 12 1212 126 HOH HOH . KA 17 HOH A 13 1213 82 HOH HOH . KA 17 HOH A 14 1214 77 HOH HOH . KA 17 HOH A 15 1215 67 HOH HOH . KA 17 HOH A 16 1216 83 HOH HOH . KA 17 HOH A 17 1217 66 HOH HOH . KA 17 HOH A 18 1218 24 HOH HOH . KA 17 HOH A 19 1219 99 HOH HOH . KA 17 HOH A 20 1220 46 HOH HOH . KA 17 HOH A 21 1221 85 HOH HOH . KA 17 HOH A 22 1222 1 HOH HOH . KA 17 HOH A 23 1223 78 HOH HOH . KA 17 HOH A 24 1224 101 HOH HOH . KA 17 HOH A 25 1225 14 HOH HOH . KA 17 HOH A 26 1226 79 HOH HOH . KA 17 HOH A 27 1227 75 HOH HOH . KA 17 HOH A 28 1228 16 HOH HOH . KA 17 HOH A 29 1229 57 HOH HOH . KA 17 HOH A 30 1230 61 HOH HOH . KA 17 HOH A 31 1231 76 HOH HOH . KA 17 HOH A 32 1232 86 HOH HOH . KA 17 HOH A 33 1233 102 HOH HOH . KA 17 HOH A 34 1234 40 HOH HOH . KA 17 HOH A 35 1235 65 HOH HOH . KA 17 HOH A 36 1236 94 HOH HOH . KA 17 HOH A 37 1237 62 HOH HOH . KA 17 HOH A 38 1238 7 HOH HOH . KA 17 HOH A 39 1239 52 HOH HOH . KA 17 HOH A 40 1240 87 HOH HOH . KA 17 HOH A 41 1241 38 HOH HOH . KA 17 HOH A 42 1242 81 HOH HOH . KA 17 HOH A 43 1243 68 HOH HOH . KA 17 HOH A 44 1244 39 HOH HOH . KA 17 HOH A 45 1245 80 HOH HOH . KA 17 HOH A 46 1246 56 HOH HOH . KA 17 HOH A 47 1247 50 HOH HOH . KA 17 HOH A 48 1248 33 HOH HOH . KA 17 HOH A 49 1249 91 HOH HOH . LA 17 HOH B 1 1201 112 HOH HOH . LA 17 HOH B 2 1202 64 HOH HOH . LA 17 HOH B 3 1203 111 HOH HOH . LA 17 HOH B 4 1204 93 HOH HOH . LA 17 HOH B 5 1205 12 HOH HOH . LA 17 HOH B 6 1206 103 HOH HOH . LA 17 HOH B 7 1207 114 HOH HOH . LA 17 HOH B 8 1208 110 HOH HOH . LA 17 HOH B 9 1209 6 HOH HOH . LA 17 HOH B 10 1210 135 HOH HOH . LA 17 HOH B 11 1211 113 HOH HOH . LA 17 HOH B 12 1212 11 HOH HOH . LA 17 HOH B 13 1213 5 HOH HOH . LA 17 HOH B 14 1214 22 HOH HOH . LA 17 HOH B 15 1215 55 HOH HOH . LA 17 HOH B 16 1216 8 HOH HOH . LA 17 HOH B 17 1217 20 HOH HOH . LA 17 HOH B 18 1218 115 HOH HOH . LA 17 HOH B 19 1219 44 HOH HOH . LA 17 HOH B 20 1220 104 HOH HOH . LA 17 HOH B 21 1221 121 HOH HOH . LA 17 HOH B 22 1222 109 HOH HOH . LA 17 HOH B 23 1223 70 HOH HOH . LA 17 HOH B 24 1224 53 HOH HOH . LA 17 HOH B 25 1225 123 HOH HOH . LA 17 HOH B 26 1226 120 HOH HOH . LA 17 HOH B 27 1227 116 HOH HOH . LA 17 HOH B 28 1228 45 HOH HOH . LA 17 HOH B 29 1229 90 HOH HOH . LA 17 HOH B 30 1230 72 HOH HOH . LA 17 HOH B 31 1231 49 HOH HOH . LA 17 HOH B 32 1232 117 HOH HOH . LA 17 HOH B 33 1233 51 HOH HOH . LA 17 HOH B 34 1234 105 HOH HOH . LA 17 HOH B 35 1235 122 HOH HOH . MA 17 HOH C 1 1401 30 HOH HOH . MA 17 HOH C 2 1402 98 HOH HOH . MA 17 HOH C 3 1403 125 HOH HOH . MA 17 HOH C 4 1404 59 HOH HOH . MA 17 HOH C 5 1405 36 HOH HOH . MA 17 HOH C 6 1406 28 HOH HOH . MA 17 HOH C 7 1407 2 HOH HOH . MA 17 HOH C 8 1408 130 HOH HOH . MA 17 HOH C 9 1409 124 HOH HOH . MA 17 HOH C 10 1410 18 HOH HOH . MA 17 HOH C 11 1411 17 HOH HOH . MA 17 HOH C 12 1412 106 HOH HOH . MA 17 HOH C 13 1413 13 HOH HOH . MA 17 HOH C 14 1414 29 HOH HOH . MA 17 HOH C 15 1415 21 HOH HOH . MA 17 HOH C 16 1416 27 HOH HOH . MA 17 HOH C 17 1417 95 HOH HOH . MA 17 HOH C 18 1418 132 HOH HOH . MA 17 HOH C 19 1419 96 HOH HOH . MA 17 HOH C 20 1420 26 HOH HOH . MA 17 HOH C 21 1421 128 HOH HOH . MA 17 HOH C 22 1422 69 HOH HOH . MA 17 HOH C 23 1423 32 HOH HOH . MA 17 HOH C 24 1424 15 HOH HOH . MA 17 HOH C 25 1425 23 HOH HOH . MA 17 HOH C 26 1426 71 HOH HOH . MA 17 HOH C 27 1427 58 HOH HOH . MA 17 HOH C 28 1428 127 HOH HOH . MA 17 HOH C 29 1429 107 HOH HOH . MA 17 HOH C 30 1430 37 HOH HOH . MA 17 HOH C 31 1431 134 HOH HOH . MA 17 HOH C 32 1432 74 HOH HOH . MA 17 HOH C 33 1433 131 HOH HOH . MA 17 HOH C 34 1434 97 HOH HOH . MA 17 HOH C 35 1435 31 HOH HOH . MA 17 HOH C 36 1436 108 HOH HOH . MA 17 HOH C 37 1437 25 HOH HOH . MA 17 HOH C 38 1438 35 HOH HOH . MA 17 HOH C 39 1439 54 HOH HOH . MA 17 HOH C 40 1440 129 HOH HOH . MA 17 HOH C 41 1441 73 HOH HOH . MA 17 HOH C 42 1442 133 HOH HOH . MA 17 HOH C 43 1443 60 HOH HOH . NA 17 HOH D 1 301 118 HOH HOH . NA 17 HOH D 2 302 84 HOH HOH . NA 17 HOH D 3 303 48 HOH HOH . NA 17 HOH D 4 304 119 HOH HOH . NA 17 HOH D 5 305 47 HOH HOH . OA 17 HOH E 1 301 3 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O8 MIY . . . P 9 34.786 -60.478 -35.686 1 88.58 ? O8 MIY 1105 B 1 HETATM 2 C C21 MIY . . . P 9 34.712 -61.162 -36.693 1 89.19 ? C21 MIY 1105 B 1 HETATM 3 N N2 MIY . . . P 9 33.706 -62.245 -36.743 1 88.69 ? N2 MIY 1105 B 1 HETATM 4 C C2 MIY . . . P 9 35.637 -60.897 -37.84 1 89.85 ? C2 MIY 1105 B 1 HETATM 5 C C1 MIY . . . P 9 35.657 -61.755 -38.991 1 89.95 ? C1 MIY 1105 B 1 HETATM 6 O O1 MIY . . . P 9 34.754 -62.573 -39.222 1 90.57 ? O1 MIY 1105 B 1 HETATM 7 C C3 MIY . . . P 9 36.489 -59.796 -37.811 1 90.1 ? C3 MIY 1105 B 1 HETATM 8 O O2 MIY . . . P 9 36.564 -58.973 -36.767 1 90.43 ? O2 MIY 1105 B 1 HETATM 9 C C4 MIY . . . P 9 37.416 -59.401 -38.941 1 89.78 ? C4 MIY 1105 B 1 HETATM 10 N N1 MIY . . . P 9 38.823 -59.417 -38.453 1 89.89 ? N1 MIY 1105 B 1 HETATM 11 C C20 MIY . . . P 9 39.873 -59.029 -39.395 1 89.16 ? C20 MIY 1105 B 1 HETATM 12 C C19 MIY . . . P 9 39.276 -60.477 -37.55 1 89.9 ? C19 MIY 1105 B 1 HETATM 13 C C5 MIY . . . P 9 37.215 -60.215 -40.241 1 89.34 ? C5 MIY 1105 B 1 HETATM 14 C C18 MIY . . . P 9 36.844 -61.672 -39.988 1 89.35 ? C18 MIY 1105 B 1 HETATM 15 O O7 MIY . . . P 9 37.959 -62.336 -39.4 1 88.69 ? O7 MIY 1105 B 1 HETATM 16 C C17 MIY . . . P 9 36.548 -62.398 -41.278 1 89.02 ? C17 MIY 1105 B 1 HETATM 17 O O6 MIY . . . P 9 36.512 -63.723 -41.164 1 89.15 ? O6 MIY 1105 B 1 HETATM 18 C C16 MIY . . . P 9 36.338 -61.776 -42.469 1 88.72 ? C16 MIY 1105 B 1 HETATM 19 C C7 MIY . . . P 9 36.242 -60.27 -42.575 1 88.67 ? C7 MIY 1105 B 1 HETATM 20 C C6 MIY . . . P 9 36.191 -59.601 -41.198 1 88.8 ? C6 MIY 1105 B 1 HETATM 21 C C15 MIY . . . P 9 36.202 -62.546 -43.689 1 88.54 ? C15 MIY 1105 B 1 HETATM 22 O O5 MIY . . . P 9 36.499 -63.786 -43.72 1 88.27 ? O5 MIY 1105 B 1 HETATM 23 C C14 MIY . . . P 9 35.713 -61.877 -44.888 1 88.64 ? C14 MIY 1105 B 1 HETATM 24 C C9 MIY . . . P 9 35.127 -60.605 -44.809 1 88.77 ? C9 MIY 1105 B 1 HETATM 25 C C8 MIY . . . P 9 35.038 -59.944 -43.469 1 88.54 ? C8 MIY 1105 B 1 HETATM 26 C C13 MIY . . . P 9 35.813 -62.513 -46.141 1 88.55 ? C13 MIY 1105 B 1 HETATM 27 O O4 MIY . . . P 9 36.359 -63.737 -46.281 1 88.26 ? O4 MIY 1105 B 1 HETATM 28 C C12 MIY . . . P 9 35.342 -61.876 -47.282 1 88.58 ? C12 MIY 1105 B 1 HETATM 29 C C11 MIY . . . P 9 34.779 -60.625 -47.198 1 88.58 ? C11 MIY 1105 B 1 HETATM 30 C C10 MIY . . . P 9 34.665 -59.973 -45.982 1 89.13 ? C10 MIY 1105 B 1 HETATM 31 N N7 MIY . . . P 9 34.068 -58.678 -45.926 1 89.61 ? N7 MIY 1105 B 1 HETATM 32 C CN7 MIY . . . P 9 33.068 -58.309 -46.921 1 89.51 ? CN7 MIY 1105 B 1 HETATM 33 C C71 MIY . . . P 9 34.842 -57.526 -45.482 1 89.6 ? C71 MIY 1105 B 1 # _model_server_stats.io_time_ms 21 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 36 _model_server_stats.query_time_ms 294 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 33 #