data_6ZOG # _model_server_result.job_id N0GBnZHPjKWg1RC5YZRRaw _model_server_result.datetime_utc '2024-11-17 00:34:51' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6zog # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"V","auth_seq_id":1301}' # _entry.id 6ZOG # _exptl.entry_id 6ZOG _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 170.335 _entity.id 13 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description DODECANE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6ZOG _cell.length_a 145.965 _cell.length_b 161.954 _cell.length_c 245.288 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6ZOG _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details pentameric _pdbx_struct_assembly.oligomeric_count 5 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 13 _struct_asym.id V _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C12 H26' _chem_comp.formula_weight 170.335 _chem_comp.id D12 _chem_comp.mon_nstd_flag . _chem_comp.name DODECANE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 D12 sing 212 n n C1 H11 D12 sing 213 n n C1 H12 D12 sing 214 n n C1 H13 D12 sing 215 n n C2 C3 D12 sing 216 n n C2 H21 D12 sing 217 n n C2 H22 D12 sing 218 n n C3 C4 D12 sing 219 n n C3 H31 D12 sing 220 n n C3 H32 D12 sing 221 n n C4 C5 D12 sing 222 n n C4 H41 D12 sing 223 n n C4 H42 D12 sing 224 n n C5 C6 D12 sing 225 n n C5 H51 D12 sing 226 n n C5 H52 D12 sing 227 n n C6 C7 D12 sing 228 n n C6 H61 D12 sing 229 n n C6 H62 D12 sing 230 n n C7 C8 D12 sing 231 n n C7 H71 D12 sing 232 n n C7 H72 D12 sing 233 n n C8 C9 D12 sing 234 n n C8 H81 D12 sing 235 n n C8 H82 D12 sing 236 n n C9 C10 D12 sing 237 n n C9 H91 D12 sing 238 n n C9 H92 D12 sing 239 n n C10 C11 D12 sing 240 n n C10 H101 D12 sing 241 n n C10 H102 D12 sing 242 n n C11 C12 D12 sing 243 n n C11 H111 D12 sing 244 n n C11 H112 D12 sing 245 n n C12 H121 D12 sing 246 n n C12 H122 D12 sing 247 n n C12 H123 D12 sing 248 n n # _atom_sites.entry_id 6ZOG _atom_sites.fract_transf_matrix[1][1] 0.006851 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006175 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004077 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code F 3 LMT A 1 1101 1101 LMT LMT . G 4 D10 A 1 1102 1201 D10 D10 . H 3 LMT A 1 1103 1401 LMT LMT . I 5 EDO A 1 1104 1501 EDO EDO . J 3 LMT A 1 1105 1801 LMT LMT . K 3 LMT A 1 1106 1401 LMT LMT . L 3 LMT B 1 1101 1101 LMT LMT . M 6 DDR B 1 1102 1201 DDR DDR . N 7 MYS B 1 1103 1301 MYS MYS . O 8 8K6 B 1 1104 1401 8K6 8K6 . P 9 MIY B 1 1105 1501 MIY MIY . Q 10 GOL B 1 1106 1601 GOL GOL . R 11 OCT B 1 1107 1701 OCT OCT . S 5 EDO B 1 1108 2001 EDO EDO . T 12 SO4 B 1 1109 2 SO4 SO4 . U 12 SO4 B 1 1110 3 SO4 SO4 . V 13 D12 C 1 1301 1301 D12 D12 . W 3 LMT C 1 1302 1101 LMT LMT . X 4 D10 C 1 1303 1201 D10 D10 . Y 14 PTY C 1 1304 1301 PTY PTY . Z 15 C14 C 1 1305 1501 C14 C14 . AA 5 EDO C 1 1306 1601 EDO EDO . BA 5 EDO C 1 1307 1801 EDO EDO . CA 10 GOL C 1 1308 1901 GOL GOL . DA 10 GOL C 1 1309 2001 GOL GOL . EA 10 GOL C 1 1310 2101 GOL GOL . FA 16 DDQ C 1 1311 2201 DDQ DDQ . GA 12 SO4 C 1 1312 1 SO4 SO4 . HA 10 GOL D 1 201 201 GOL GOL . IA 5 EDO E 1 201 201 EDO EDO . JA 5 EDO E 1 202 301 EDO EDO . KA 17 HOH A 1 1201 34 HOH HOH . KA 17 HOH A 2 1202 88 HOH HOH . KA 17 HOH A 3 1203 92 HOH HOH . KA 17 HOH A 4 1204 10 HOH HOH . KA 17 HOH A 5 1205 43 HOH HOH . KA 17 HOH A 6 1206 63 HOH HOH . KA 17 HOH A 7 1207 89 HOH HOH . KA 17 HOH A 8 1208 100 HOH HOH . KA 17 HOH A 9 1209 42 HOH HOH . KA 17 HOH A 10 1210 41 HOH HOH . KA 17 HOH A 11 1211 9 HOH HOH . KA 17 HOH A 12 1212 126 HOH HOH . KA 17 HOH A 13 1213 82 HOH HOH . KA 17 HOH A 14 1214 77 HOH HOH . KA 17 HOH A 15 1215 67 HOH HOH . KA 17 HOH A 16 1216 83 HOH HOH . KA 17 HOH A 17 1217 66 HOH HOH . KA 17 HOH A 18 1218 24 HOH HOH . KA 17 HOH A 19 1219 99 HOH HOH . KA 17 HOH A 20 1220 46 HOH HOH . KA 17 HOH A 21 1221 85 HOH HOH . KA 17 HOH A 22 1222 1 HOH HOH . KA 17 HOH A 23 1223 78 HOH HOH . KA 17 HOH A 24 1224 101 HOH HOH . KA 17 HOH A 25 1225 14 HOH HOH . KA 17 HOH A 26 1226 79 HOH HOH . KA 17 HOH A 27 1227 75 HOH HOH . KA 17 HOH A 28 1228 16 HOH HOH . KA 17 HOH A 29 1229 57 HOH HOH . KA 17 HOH A 30 1230 61 HOH HOH . KA 17 HOH A 31 1231 76 HOH HOH . KA 17 HOH A 32 1232 86 HOH HOH . KA 17 HOH A 33 1233 102 HOH HOH . KA 17 HOH A 34 1234 40 HOH HOH . KA 17 HOH A 35 1235 65 HOH HOH . KA 17 HOH A 36 1236 94 HOH HOH . KA 17 HOH A 37 1237 62 HOH HOH . KA 17 HOH A 38 1238 7 HOH HOH . KA 17 HOH A 39 1239 52 HOH HOH . KA 17 HOH A 40 1240 87 HOH HOH . KA 17 HOH A 41 1241 38 HOH HOH . KA 17 HOH A 42 1242 81 HOH HOH . KA 17 HOH A 43 1243 68 HOH HOH . KA 17 HOH A 44 1244 39 HOH HOH . KA 17 HOH A 45 1245 80 HOH HOH . KA 17 HOH A 46 1246 56 HOH HOH . KA 17 HOH A 47 1247 50 HOH HOH . KA 17 HOH A 48 1248 33 HOH HOH . KA 17 HOH A 49 1249 91 HOH HOH . LA 17 HOH B 1 1201 112 HOH HOH . LA 17 HOH B 2 1202 64 HOH HOH . LA 17 HOH B 3 1203 111 HOH HOH . LA 17 HOH B 4 1204 93 HOH HOH . LA 17 HOH B 5 1205 12 HOH HOH . LA 17 HOH B 6 1206 103 HOH HOH . LA 17 HOH B 7 1207 114 HOH HOH . LA 17 HOH B 8 1208 110 HOH HOH . LA 17 HOH B 9 1209 6 HOH HOH . LA 17 HOH B 10 1210 135 HOH HOH . LA 17 HOH B 11 1211 113 HOH HOH . LA 17 HOH B 12 1212 11 HOH HOH . LA 17 HOH B 13 1213 5 HOH HOH . LA 17 HOH B 14 1214 22 HOH HOH . LA 17 HOH B 15 1215 55 HOH HOH . LA 17 HOH B 16 1216 8 HOH HOH . LA 17 HOH B 17 1217 20 HOH HOH . LA 17 HOH B 18 1218 115 HOH HOH . LA 17 HOH B 19 1219 44 HOH HOH . LA 17 HOH B 20 1220 104 HOH HOH . LA 17 HOH B 21 1221 121 HOH HOH . LA 17 HOH B 22 1222 109 HOH HOH . LA 17 HOH B 23 1223 70 HOH HOH . LA 17 HOH B 24 1224 53 HOH HOH . LA 17 HOH B 25 1225 123 HOH HOH . LA 17 HOH B 26 1226 120 HOH HOH . LA 17 HOH B 27 1227 116 HOH HOH . LA 17 HOH B 28 1228 45 HOH HOH . LA 17 HOH B 29 1229 90 HOH HOH . LA 17 HOH B 30 1230 72 HOH HOH . LA 17 HOH B 31 1231 49 HOH HOH . LA 17 HOH B 32 1232 117 HOH HOH . LA 17 HOH B 33 1233 51 HOH HOH . LA 17 HOH B 34 1234 105 HOH HOH . LA 17 HOH B 35 1235 122 HOH HOH . MA 17 HOH C 1 1401 30 HOH HOH . MA 17 HOH C 2 1402 98 HOH HOH . MA 17 HOH C 3 1403 125 HOH HOH . MA 17 HOH C 4 1404 59 HOH HOH . MA 17 HOH C 5 1405 36 HOH HOH . MA 17 HOH C 6 1406 28 HOH HOH . MA 17 HOH C 7 1407 2 HOH HOH . MA 17 HOH C 8 1408 130 HOH HOH . MA 17 HOH C 9 1409 124 HOH HOH . MA 17 HOH C 10 1410 18 HOH HOH . MA 17 HOH C 11 1411 17 HOH HOH . MA 17 HOH C 12 1412 106 HOH HOH . MA 17 HOH C 13 1413 13 HOH HOH . MA 17 HOH C 14 1414 29 HOH HOH . MA 17 HOH C 15 1415 21 HOH HOH . MA 17 HOH C 16 1416 27 HOH HOH . MA 17 HOH C 17 1417 95 HOH HOH . MA 17 HOH C 18 1418 132 HOH HOH . MA 17 HOH C 19 1419 96 HOH HOH . MA 17 HOH C 20 1420 26 HOH HOH . MA 17 HOH C 21 1421 128 HOH HOH . MA 17 HOH C 22 1422 69 HOH HOH . MA 17 HOH C 23 1423 32 HOH HOH . MA 17 HOH C 24 1424 15 HOH HOH . MA 17 HOH C 25 1425 23 HOH HOH . MA 17 HOH C 26 1426 71 HOH HOH . MA 17 HOH C 27 1427 58 HOH HOH . MA 17 HOH C 28 1428 127 HOH HOH . MA 17 HOH C 29 1429 107 HOH HOH . MA 17 HOH C 30 1430 37 HOH HOH . MA 17 HOH C 31 1431 134 HOH HOH . MA 17 HOH C 32 1432 74 HOH HOH . MA 17 HOH C 33 1433 131 HOH HOH . MA 17 HOH C 34 1434 97 HOH HOH . MA 17 HOH C 35 1435 31 HOH HOH . MA 17 HOH C 36 1436 108 HOH HOH . MA 17 HOH C 37 1437 25 HOH HOH . MA 17 HOH C 38 1438 35 HOH HOH . MA 17 HOH C 39 1439 54 HOH HOH . MA 17 HOH C 40 1440 129 HOH HOH . MA 17 HOH C 41 1441 73 HOH HOH . MA 17 HOH C 42 1442 133 HOH HOH . MA 17 HOH C 43 1443 60 HOH HOH . NA 17 HOH D 1 301 118 HOH HOH . NA 17 HOH D 2 302 84 HOH HOH . NA 17 HOH D 3 303 48 HOH HOH . NA 17 HOH D 4 304 119 HOH HOH . NA 17 HOH D 5 305 47 HOH HOH . OA 17 HOH E 1 301 3 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 D12 . . . V 13 59.721 11.697 -33.251 1 81.14 ? C1 D12 1301 C 1 HETATM 2 C C2 D12 . . . V 13 60.407 12.62 -34.229 1 81.58 ? C2 D12 1301 C 1 HETATM 3 C C3 D12 . . . V 13 59.677 13.92 -34.456 1 82 ? C3 D12 1301 C 1 HETATM 4 C C4 D12 . . . V 13 60.447 14.929 -35.274 1 82.37 ? C4 D12 1301 C 1 HETATM 5 C C5 D12 . . . V 13 59.609 16.061 -35.819 1 82.78 ? C5 D12 1301 C 1 HETATM 6 C C6 D12 . . . V 13 60.413 17.217 -36.366 1 83.5 ? C6 D12 1301 C 1 HETATM 7 C C7 D12 . . . V 13 59.627 18.172 -37.233 1 84.21 ? C7 D12 1301 C 1 HETATM 8 C C8 D12 . . . V 13 60.319 19.495 -37.481 1 84.52 ? C8 D12 1301 C 1 HETATM 9 C C9 D12 . . . V 13 59.961 20.161 -38.792 1 84.88 ? C9 D12 1301 C 1 HETATM 10 C C10 D12 . . . V 13 58.816 21.143 -38.701 1 85.08 ? C10 D12 1301 C 1 HETATM 11 C C11 D12 . . . V 13 58.063 21.342 -39.994 1 84.86 ? C11 D12 1301 C 1 HETATM 12 C C12 D12 . . . V 13 57.248 22.614 -40.052 1 84.41 ? C12 D12 1301 C 1 # _model_server_stats.io_time_ms 17 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 62 _model_server_stats.query_time_ms 317 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 12 #