data_6ZOH # _model_server_result.job_id h44bJsLe5pHo5nKF3litVg _model_server_result.datetime_utc '2024-11-23 16:21:04' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6zoh # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"NA","auth_seq_id":1116}' # _entry.id 6ZOH # _exptl.entry_id 6ZOH _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6ZOH _cell.length_a 145.143 _cell.length_b 160.129 _cell.length_c 243.588 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6ZOH _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details pentameric _pdbx_struct_assembly.oligomeric_count 5 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 I N N ? 5 T N N ? 5 JA N N ? 5 NA N N # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 419 n n C1 C2 GOL sing 420 n n C1 H11 GOL sing 421 n n C1 H12 GOL sing 422 n n O1 HO1 GOL sing 423 n n C2 O2 GOL sing 424 n n C2 C3 GOL sing 425 n n C2 H2 GOL sing 426 n n O2 HO2 GOL sing 427 n n C3 O3 GOL sing 428 n n C3 H31 GOL sing 429 n n C3 H32 GOL sing 430 n n O3 HO3 GOL sing 431 n n # _atom_sites.entry_id 6ZOH _atom_sites.fract_transf_matrix[1][1] 0.00689 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006245 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004105 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code F 3 LMT A 1 1201 1201 LMT LMT . G 3 LMT A 1 1202 1301 LMT LMT . H 4 EDO A 1 1203 1501 EDO EDO . I 5 GOL A 1 1204 1601 GOL GOL . J 6 D12 A 1 1205 1901 D12 D12 . K 7 DDQ A 1 1206 2001 DDQ DDQ . L 4 EDO A 1 1207 2201 EDO EDO . M 6 D12 A 1 1208 2301 D12 D12 . N 4 EDO A 1 1209 2401 EDO EDO . O 8 3YI A 1 1210 2501 3YI 3YI . P 3 LMT A 1 1211 1501 LMT LMT . Q 4 EDO A 1 1212 3001 EDO EDO . R 3 LMT B 1 1101 1101 LMT LMT . S 4 EDO B 1 1102 1301 EDO EDO . T 5 GOL B 1 1103 1401 GOL GOL . U 4 EDO B 1 1104 1601 EDO EDO . V 9 DDR B 1 1105 1701 DDR DDR . W 7 DDQ B 1 1106 1801 DDQ DDQ . X 8 3YI B 1 1107 1901 3YI 3YI . Y 10 PTY C 1 1101 1101 PTY PTY . Z 3 LMT C 1 1102 1201 LMT LMT . AA 6 D12 C 1 1103 1401 D12 D12 . BA 6 D12 C 1 1104 1601 D12 D12 . CA 11 D10 C 1 1105 1701 D10 D10 . DA 12 LPX C 1 1106 1801 LPX LPX . EA 4 EDO C 1 1107 1901 EDO EDO . FA 4 EDO C 1 1108 2001 EDO EDO . GA 4 EDO C 1 1109 2101 EDO EDO . HA 4 EDO C 1 1110 2201 EDO EDO . IA 13 HEX C 1 1111 2301 HEX HEX . JA 5 GOL C 1 1112 2501 GOL GOL . KA 3 LMT C 1 1113 2601 LMT LMT . LA 3 LMT C 1 1114 2701 LMT LMT . MA 13 HEX C 1 1115 2801 HEX HEX . NA 5 GOL C 1 1116 2901 GOL GOL . OA 14 HOH A 1 1301 147 HOH HOH . OA 14 HOH A 2 1302 56 HOH HOH . OA 14 HOH A 3 1303 98 HOH HOH . OA 14 HOH A 4 1304 229 HOH HOH . OA 14 HOH A 5 1305 162 HOH HOH . OA 14 HOH A 6 1306 140 HOH HOH . OA 14 HOH A 7 1307 61 HOH HOH . OA 14 HOH A 8 1308 128 HOH HOH . OA 14 HOH A 9 1309 219 HOH HOH . OA 14 HOH A 10 1310 14 HOH HOH . OA 14 HOH A 11 1311 74 HOH HOH . OA 14 HOH A 12 1312 157 HOH HOH . OA 14 HOH A 13 1313 158 HOH HOH . OA 14 HOH A 14 1314 16 HOH HOH . OA 14 HOH A 15 1315 179 HOH HOH . OA 14 HOH A 16 1316 45 HOH HOH . OA 14 HOH A 17 1317 88 HOH HOH . OA 14 HOH A 18 1318 129 HOH HOH . OA 14 HOH A 19 1319 13 HOH HOH . OA 14 HOH A 20 1320 156 HOH HOH . OA 14 HOH A 21 1321 159 HOH HOH . OA 14 HOH A 22 1322 150 HOH HOH . OA 14 HOH A 23 1323 65 HOH HOH . OA 14 HOH A 24 1324 96 HOH HOH . OA 14 HOH A 25 1325 26 HOH HOH . OA 14 HOH A 26 1326 25 HOH HOH . OA 14 HOH A 27 1327 23 HOH HOH . OA 14 HOH A 28 1328 95 HOH HOH . OA 14 HOH A 29 1329 125 HOH HOH . OA 14 HOH A 30 1330 12 HOH HOH . OA 14 HOH A 31 1331 72 HOH HOH . OA 14 HOH A 32 1332 204 HOH HOH . OA 14 HOH A 33 1333 176 HOH HOH . OA 14 HOH A 34 1334 87 HOH HOH . OA 14 HOH A 35 1335 149 HOH HOH . OA 14 HOH A 36 1336 1 HOH HOH . OA 14 HOH A 37 1337 230 HOH HOH . OA 14 HOH A 38 1338 165 HOH HOH . OA 14 HOH A 39 1339 15 HOH HOH . OA 14 HOH A 40 1340 8 HOH HOH . OA 14 HOH A 41 1341 231 HOH HOH . OA 14 HOH A 42 1342 208 HOH HOH . OA 14 HOH A 43 1343 44 HOH HOH . OA 14 HOH A 44 1344 21 HOH HOH . OA 14 HOH A 45 1345 227 HOH HOH . OA 14 HOH A 46 1346 148 HOH HOH . OA 14 HOH A 47 1347 220 HOH HOH . OA 14 HOH A 48 1348 11 HOH HOH . OA 14 HOH A 49 1349 233 HOH HOH . OA 14 HOH A 50 1350 223 HOH HOH . OA 14 HOH A 51 1351 90 HOH HOH . OA 14 HOH A 52 1352 205 HOH HOH . OA 14 HOH A 53 1353 131 HOH HOH . OA 14 HOH A 54 1354 214 HOH HOH . OA 14 HOH A 55 1355 153 HOH HOH . OA 14 HOH A 56 1356 141 HOH HOH . OA 14 HOH A 57 1357 144 HOH HOH . OA 14 HOH A 58 1358 142 HOH HOH . OA 14 HOH A 59 1359 89 HOH HOH . OA 14 HOH A 60 1360 207 HOH HOH . OA 14 HOH A 61 1361 66 HOH HOH . OA 14 HOH A 62 1362 5 HOH HOH . OA 14 HOH A 63 1363 226 HOH HOH . OA 14 HOH A 64 1364 91 HOH HOH . OA 14 HOH A 65 1365 151 HOH HOH . OA 14 HOH A 66 1366 180 HOH HOH . OA 14 HOH A 67 1367 213 HOH HOH . OA 14 HOH A 68 1368 28 HOH HOH . OA 14 HOH A 69 1369 71 HOH HOH . OA 14 HOH A 70 1370 209 HOH HOH . OA 14 HOH A 71 1371 171 HOH HOH . OA 14 HOH A 72 1372 132 HOH HOH . OA 14 HOH A 73 1373 76 HOH HOH . OA 14 HOH A 74 1374 164 HOH HOH . OA 14 HOH A 75 1375 99 HOH HOH . OA 14 HOH A 76 1376 232 HOH HOH . OA 14 HOH A 77 1377 161 HOH HOH . OA 14 HOH A 78 1378 35 HOH HOH . PA 14 HOH B 1 1201 34 HOH HOH . PA 14 HOH B 2 1202 155 HOH HOH . PA 14 HOH B 3 1203 152 HOH HOH . PA 14 HOH B 4 1204 79 HOH HOH . PA 14 HOH B 5 1205 174 HOH HOH . PA 14 HOH B 6 1206 127 HOH HOH . PA 14 HOH B 7 1207 103 HOH HOH . PA 14 HOH B 8 1208 182 HOH HOH . PA 14 HOH B 9 1209 7 HOH HOH . PA 14 HOH B 10 1210 234 HOH HOH . PA 14 HOH B 11 1211 111 HOH HOH . PA 14 HOH B 12 1212 18 HOH HOH . PA 14 HOH B 13 1213 177 HOH HOH . PA 14 HOH B 14 1214 154 HOH HOH . PA 14 HOH B 15 1215 242 HOH HOH . PA 14 HOH B 16 1216 216 HOH HOH . PA 14 HOH B 17 1217 108 HOH HOH . PA 14 HOH B 18 1218 29 HOH HOH . PA 14 HOH B 19 1219 67 HOH HOH . PA 14 HOH B 20 1220 77 HOH HOH . PA 14 HOH B 21 1221 19 HOH HOH . PA 14 HOH B 22 1222 43 HOH HOH . PA 14 HOH B 23 1223 58 HOH HOH . PA 14 HOH B 24 1224 215 HOH HOH . PA 14 HOH B 25 1225 115 HOH HOH . PA 14 HOH B 26 1226 178 HOH HOH . PA 14 HOH B 27 1227 126 HOH HOH . PA 14 HOH B 28 1228 33 HOH HOH . PA 14 HOH B 29 1229 73 HOH HOH . PA 14 HOH B 30 1230 112 HOH HOH . PA 14 HOH B 31 1231 173 HOH HOH . PA 14 HOH B 32 1232 113 HOH HOH . PA 14 HOH B 33 1233 104 HOH HOH . PA 14 HOH B 34 1234 62 HOH HOH . PA 14 HOH B 35 1235 175 HOH HOH . PA 14 HOH B 36 1236 107 HOH HOH . PA 14 HOH B 37 1237 206 HOH HOH . PA 14 HOH B 38 1238 57 HOH HOH . PA 14 HOH B 39 1239 181 HOH HOH . PA 14 HOH B 40 1240 31 HOH HOH . PA 14 HOH B 41 1241 3 HOH HOH . PA 14 HOH B 42 1242 55 HOH HOH . PA 14 HOH B 43 1243 235 HOH HOH . PA 14 HOH B 44 1244 36 HOH HOH . PA 14 HOH B 45 1245 17 HOH HOH . PA 14 HOH B 46 1246 78 HOH HOH . PA 14 HOH B 47 1247 211 HOH HOH . PA 14 HOH B 48 1248 54 HOH HOH . PA 14 HOH B 49 1249 251 HOH HOH . PA 14 HOH B 50 1250 210 HOH HOH . PA 14 HOH B 51 1251 37 HOH HOH . PA 14 HOH B 52 1252 109 HOH HOH . PA 14 HOH B 53 1253 237 HOH HOH . PA 14 HOH B 54 1254 238 HOH HOH . PA 14 HOH B 55 1255 38 HOH HOH . PA 14 HOH B 56 1256 121 HOH HOH . PA 14 HOH B 57 1257 30 HOH HOH . PA 14 HOH B 58 1258 172 HOH HOH . PA 14 HOH B 59 1259 249 HOH HOH . PA 14 HOH B 60 1260 32 HOH HOH . PA 14 HOH B 61 1261 239 HOH HOH . PA 14 HOH B 62 1262 243 HOH HOH . PA 14 HOH B 63 1263 80 HOH HOH . PA 14 HOH B 64 1264 240 HOH HOH . PA 14 HOH B 65 1265 236 HOH HOH . PA 14 HOH B 66 1266 244 HOH HOH . PA 14 HOH B 67 1267 241 HOH HOH . QA 14 HOH C 1 1201 92 HOH HOH . QA 14 HOH C 2 1202 190 HOH HOH . QA 14 HOH C 3 1203 68 HOH HOH . QA 14 HOH C 4 1204 22 HOH HOH . QA 14 HOH C 5 1205 192 HOH HOH . QA 14 HOH C 6 1206 10 HOH HOH . QA 14 HOH C 7 1207 130 HOH HOH . QA 14 HOH C 8 1208 225 HOH HOH . QA 14 HOH C 9 1209 24 HOH HOH . QA 14 HOH C 10 1210 86 HOH HOH . QA 14 HOH C 11 1211 189 HOH HOH . QA 14 HOH C 12 1212 53 HOH HOH . QA 14 HOH C 13 1213 46 HOH HOH . QA 14 HOH C 14 1214 40 HOH HOH . QA 14 HOH C 15 1215 245 HOH HOH . QA 14 HOH C 16 1216 102 HOH HOH . QA 14 HOH C 17 1217 81 HOH HOH . QA 14 HOH C 18 1218 221 HOH HOH . QA 14 HOH C 19 1219 94 HOH HOH . QA 14 HOH C 20 1220 84 HOH HOH . QA 14 HOH C 21 1221 169 HOH HOH . QA 14 HOH C 22 1222 193 HOH HOH . QA 14 HOH C 23 1223 51 HOH HOH . QA 14 HOH C 24 1224 39 HOH HOH . QA 14 HOH C 25 1225 9 HOH HOH . QA 14 HOH C 26 1226 137 HOH HOH . QA 14 HOH C 27 1227 42 HOH HOH . QA 14 HOH C 28 1228 135 HOH HOH . QA 14 HOH C 29 1229 60 HOH HOH . QA 14 HOH C 30 1230 185 HOH HOH . QA 14 HOH C 31 1231 75 HOH HOH . QA 14 HOH C 32 1232 97 HOH HOH . QA 14 HOH C 33 1233 83 HOH HOH . QA 14 HOH C 34 1234 6 HOH HOH . QA 14 HOH C 35 1235 222 HOH HOH . QA 14 HOH C 36 1236 41 HOH HOH . QA 14 HOH C 37 1237 194 HOH HOH . QA 14 HOH C 38 1238 139 HOH HOH . QA 14 HOH C 39 1239 136 HOH HOH . QA 14 HOH C 40 1240 20 HOH HOH . QA 14 HOH C 41 1241 188 HOH HOH . QA 14 HOH C 42 1242 167 HOH HOH . QA 14 HOH C 43 1243 52 HOH HOH . QA 14 HOH C 44 1244 143 HOH HOH . QA 14 HOH C 45 1245 59 HOH HOH . QA 14 HOH C 46 1246 198 HOH HOH . QA 14 HOH C 47 1247 48 HOH HOH . QA 14 HOH C 48 1248 183 HOH HOH . QA 14 HOH C 49 1249 134 HOH HOH . QA 14 HOH C 50 1250 196 HOH HOH . QA 14 HOH C 51 1251 138 HOH HOH . QA 14 HOH C 52 1252 105 HOH HOH . QA 14 HOH C 53 1253 187 HOH HOH . QA 14 HOH C 54 1254 82 HOH HOH . QA 14 HOH C 55 1255 145 HOH HOH . QA 14 HOH C 56 1256 85 HOH HOH . QA 14 HOH C 57 1257 186 HOH HOH . QA 14 HOH C 58 1258 100 HOH HOH . QA 14 HOH C 59 1259 146 HOH HOH . QA 14 HOH C 60 1260 170 HOH HOH . QA 14 HOH C 61 1261 27 HOH HOH . QA 14 HOH C 62 1262 93 HOH HOH . QA 14 HOH C 63 1263 197 HOH HOH . QA 14 HOH C 64 1264 195 HOH HOH . QA 14 HOH C 65 1265 168 HOH HOH . QA 14 HOH C 66 1266 184 HOH HOH . QA 14 HOH C 67 1267 47 HOH HOH . QA 14 HOH C 68 1268 224 HOH HOH . RA 14 HOH D 1 201 247 HOH HOH . RA 14 HOH D 2 202 217 HOH HOH . RA 14 HOH D 3 203 122 HOH HOH . RA 14 HOH D 4 204 110 HOH HOH . RA 14 HOH D 5 205 163 HOH HOH . RA 14 HOH D 6 206 218 HOH HOH . RA 14 HOH D 7 207 246 HOH HOH . RA 14 HOH D 8 208 212 HOH HOH . RA 14 HOH D 9 209 114 HOH HOH . RA 14 HOH D 10 210 250 HOH HOH . RA 14 HOH D 11 211 63 HOH HOH . RA 14 HOH D 12 212 2 HOH HOH . RA 14 HOH D 13 213 123 HOH HOH . RA 14 HOH D 14 214 116 HOH HOH . RA 14 HOH D 15 215 124 HOH HOH . RA 14 HOH D 16 216 64 HOH HOH . RA 14 HOH D 17 217 248 HOH HOH . SA 14 HOH E 1 201 203 HOH HOH . SA 14 HOH E 2 202 200 HOH HOH . SA 14 HOH E 3 203 70 HOH HOH . SA 14 HOH E 4 204 69 HOH HOH . SA 14 HOH E 5 205 228 HOH HOH . SA 14 HOH E 6 206 106 HOH HOH . SA 14 HOH E 7 207 201 HOH HOH . SA 14 HOH E 8 208 199 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . NA 5 92.353 -38.069 -22.123 1 86.47 ? C1 GOL 1116 C 1 HETATM 2 O O1 GOL . . . NA 5 92.194 -38.309 -20.727 1 86.16 ? O1 GOL 1116 C 1 HETATM 3 C C2 GOL . . . NA 5 93.05 -39.221 -22.818 1 86.32 ? C2 GOL 1116 C 1 HETATM 4 O O2 GOL . . . NA 5 92.094 -40.227 -23.153 1 84.43 ? O2 GOL 1116 C 1 HETATM 5 C C3 GOL . . . NA 5 93.803 -38.802 -24.064 1 86.03 ? C3 GOL 1116 C 1 HETATM 6 O O3 GOL . . . NA 5 94.751 -37.772 -23.792 1 85.62 ? O3 GOL 1116 C 1 # _model_server_stats.io_time_ms 18 _model_server_stats.parse_time_ms 16 _model_server_stats.create_model_time_ms 98 _model_server_stats.query_time_ms 342 _model_server_stats.encode_time_ms 10 _model_server_stats.element_count 6 #