data_6ZPC # _model_server_result.job_id A4r8LIpHukDS7vLFYXw2Ag _model_server_result.datetime_utc '2024-11-13 05:16:49' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6zpc # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":202}' # _entry.id 6ZPC # _exptl.entry_id 6ZPC _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 65.409 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'ZINC ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 6ZPC _cell.length_a 141.65 _cell.length_b 141.65 _cell.length_c 53.73 _cell.Z_PDB 18 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6ZPC _symmetry.cell_setting ? _symmetry.Int_Tables_number 155 _symmetry.space_group_name_Hall 'R 3 2"' _symmetry.space_group_name_H-M 'H 3 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details hexameric _pdbx_struct_assembly.oligomeric_count 6 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4,5,6 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 -y,x-y,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 0 0 0 3 'crystal symmetry operation' 3_555 -x+y,-x,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 0 0 0 4 'crystal symmetry operation' 4_555 y,x,-z -0.5 0.866025 0 0.866025 0.5 0 0 0 -1 0 0 0 5 'crystal symmetry operation' 5_555 x-y,-y,-z 1 0 0 0 -1 0 0 0 -1 0 0 0 6 'crystal symmetry operation' 6_555 -x,-x+y,-z -0.5 -0.866025 0 -0.866025 0.5 0 0 0 -1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A O TRP 26 A TRP 20 1_555 D LI LI . A LI 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.796 ? metalc ? metalc2 A O VAL 29 A VAL 23 1_555 D LI LI . A LI 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.899 ? metalc ? metalc3 A NE2 HIS 40 A HIS 34 1_555 C ZN ZN . A ZN 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.177 ? metalc ? metalc4 A NE2 HIS 72 A HIS 66 1_555 C ZN ZN . A ZN 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.929 ? metalc ? metalc5 A OE2 GLU 76 A GLU 70 1_555 E LI LI . A LI 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? metalc ? metalc6 A OD1 ASP 81 A ASP 75 1_555 E LI LI . A LI 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.913 ? metalc ? metalc7 A OD1 ASP 125 A ASP 119 1_555 C ZN ZN . A ZN 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.196 ? metalc ? metalc8 B O2A DTP . A DTP 201 1_555 E LI LI . A LI 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.8 ? metalc ? metalc9 C ZN ZN . A ZN 202 1_555 F O HOH . A HOH 322 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.708 ? metalc ? metalc10 D LI LI . A LI 203 1_555 F O HOH . A HOH 335 6_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.999 ? metalc ? metalc11 D LI LI . A LI 203 1_555 F O HOH . A HOH 342 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.991 ? metalc ? metalc12 E LI LI . A LI 204 1_555 F O HOH . A HOH 323 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.119 ? # _chem_comp.formula 'Zn 2' _chem_comp.formula_weight 65.409 _chem_comp.id ZN _chem_comp.mon_nstd_flag . _chem_comp.name 'ZINC ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 6ZPC _atom_sites.fract_transf_matrix[1][1] 0.00706 _atom_sites.fract_transf_matrix[1][2] 0.004076 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008152 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.018612 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 DTP A 1 201 1 DTP DTP . C 3 ZN A 1 202 1 ZN ZN . D 4 LI A 1 203 1 LI LI . E 4 LI A 1 204 2 LI LI . F 5 HOH A 1 301 224 HOH HOH . F 5 HOH A 2 302 136 HOH HOH . F 5 HOH A 3 303 209 HOH HOH . F 5 HOH A 4 304 177 HOH HOH . F 5 HOH A 5 305 90 HOH HOH . F 5 HOH A 6 306 222 HOH HOH . F 5 HOH A 7 307 217 HOH HOH . F 5 HOH A 8 308 205 HOH HOH . F 5 HOH A 9 309 138 HOH HOH . F 5 HOH A 10 310 158 HOH HOH . F 5 HOH A 11 311 74 HOH HOH . F 5 HOH A 12 312 221 HOH HOH . F 5 HOH A 13 313 186 HOH HOH . F 5 HOH A 14 314 131 HOH HOH . F 5 HOH A 15 315 4 HOH HOH . F 5 HOH A 16 316 149 HOH HOH . F 5 HOH A 17 317 39 HOH HOH . F 5 HOH A 18 318 103 HOH HOH . F 5 HOH A 19 319 213 HOH HOH . F 5 HOH A 20 320 212 HOH HOH . F 5 HOH A 21 321 86 HOH HOH . F 5 HOH A 22 322 208 HOH HOH . F 5 HOH A 23 323 94 HOH HOH . F 5 HOH A 24 324 104 HOH HOH . F 5 HOH A 25 325 125 HOH HOH . F 5 HOH A 26 326 88 HOH HOH . F 5 HOH A 27 327 5 HOH HOH . F 5 HOH A 28 328 67 HOH HOH . F 5 HOH A 29 329 128 HOH HOH . F 5 HOH A 30 330 19 HOH HOH . F 5 HOH A 31 331 115 HOH HOH . F 5 HOH A 32 332 93 HOH HOH . F 5 HOH A 33 333 12 HOH HOH . F 5 HOH A 34 334 45 HOH HOH . F 5 HOH A 35 335 14 HOH HOH . F 5 HOH A 36 336 168 HOH HOH . F 5 HOH A 37 337 194 HOH HOH . F 5 HOH A 38 338 76 HOH HOH . F 5 HOH A 39 339 175 HOH HOH . F 5 HOH A 40 340 81 HOH HOH . F 5 HOH A 41 341 207 HOH HOH . F 5 HOH A 42 342 7 HOH HOH . F 5 HOH A 43 343 89 HOH HOH . F 5 HOH A 44 344 2 HOH HOH . F 5 HOH A 45 345 150 HOH HOH . F 5 HOH A 46 346 38 HOH HOH . F 5 HOH A 47 347 192 HOH HOH . F 5 HOH A 48 348 124 HOH HOH . F 5 HOH A 49 349 59 HOH HOH . F 5 HOH A 50 350 35 HOH HOH . F 5 HOH A 51 351 114 HOH HOH . F 5 HOH A 52 352 10 HOH HOH . F 5 HOH A 53 353 110 HOH HOH . F 5 HOH A 54 354 26 HOH HOH . F 5 HOH A 55 355 91 HOH HOH . F 5 HOH A 56 356 195 HOH HOH . F 5 HOH A 57 357 155 HOH HOH . F 5 HOH A 58 358 56 HOH HOH . F 5 HOH A 59 359 50 HOH HOH . F 5 HOH A 60 360 31 HOH HOH . F 5 HOH A 61 361 28 HOH HOH . F 5 HOH A 62 362 118 HOH HOH . F 5 HOH A 63 363 48 HOH HOH . F 5 HOH A 64 364 190 HOH HOH . F 5 HOH A 65 365 151 HOH HOH . F 5 HOH A 66 366 120 HOH HOH . F 5 HOH A 67 367 113 HOH HOH . F 5 HOH A 68 368 24 HOH HOH . F 5 HOH A 69 369 133 HOH HOH . F 5 HOH A 70 370 63 HOH HOH . F 5 HOH A 71 371 166 HOH HOH . F 5 HOH A 72 372 82 HOH HOH . F 5 HOH A 73 373 69 HOH HOH . F 5 HOH A 74 374 153 HOH HOH . F 5 HOH A 75 375 77 HOH HOH . F 5 HOH A 76 376 54 HOH HOH . F 5 HOH A 77 377 36 HOH HOH . F 5 HOH A 78 378 1 HOH HOH . F 5 HOH A 79 379 60 HOH HOH . F 5 HOH A 80 380 119 HOH HOH . F 5 HOH A 81 381 8 HOH HOH . F 5 HOH A 82 382 121 HOH HOH . F 5 HOH A 83 383 40 HOH HOH . F 5 HOH A 84 384 70 HOH HOH . F 5 HOH A 85 385 182 HOH HOH . F 5 HOH A 86 386 199 HOH HOH . F 5 HOH A 87 387 21 HOH HOH . F 5 HOH A 88 388 18 HOH HOH . F 5 HOH A 89 389 102 HOH HOH . F 5 HOH A 90 390 165 HOH HOH . F 5 HOH A 91 391 42 HOH HOH . F 5 HOH A 92 392 126 HOH HOH . F 5 HOH A 93 393 47 HOH HOH . F 5 HOH A 94 394 183 HOH HOH . F 5 HOH A 95 395 127 HOH HOH . F 5 HOH A 96 396 112 HOH HOH . F 5 HOH A 97 397 107 HOH HOH . F 5 HOH A 98 398 122 HOH HOH . F 5 HOH A 99 399 87 HOH HOH . F 5 HOH A 100 400 13 HOH HOH . F 5 HOH A 101 401 80 HOH HOH . F 5 HOH A 102 402 17 HOH HOH . F 5 HOH A 103 403 52 HOH HOH . F 5 HOH A 104 404 3 HOH HOH . F 5 HOH A 105 405 116 HOH HOH . F 5 HOH A 106 406 20 HOH HOH . F 5 HOH A 107 407 130 HOH HOH . F 5 HOH A 108 408 16 HOH HOH . F 5 HOH A 109 409 27 HOH HOH . F 5 HOH A 110 410 100 HOH HOH . F 5 HOH A 111 411 23 HOH HOH . F 5 HOH A 112 412 123 HOH HOH . F 5 HOH A 113 413 101 HOH HOH . F 5 HOH A 114 414 75 HOH HOH . F 5 HOH A 115 415 210 HOH HOH . F 5 HOH A 116 416 148 HOH HOH . F 5 HOH A 117 417 65 HOH HOH . F 5 HOH A 118 418 62 HOH HOH . F 5 HOH A 119 419 25 HOH HOH . F 5 HOH A 120 420 34 HOH HOH . F 5 HOH A 121 421 43 HOH HOH . F 5 HOH A 122 422 99 HOH HOH . F 5 HOH A 123 423 44 HOH HOH . F 5 HOH A 124 424 109 HOH HOH . F 5 HOH A 125 425 179 HOH HOH . F 5 HOH A 126 426 96 HOH HOH . F 5 HOH A 127 427 53 HOH HOH . F 5 HOH A 128 428 137 HOH HOH . F 5 HOH A 129 429 171 HOH HOH . F 5 HOH A 130 430 214 HOH HOH . F 5 HOH A 131 431 117 HOH HOH . F 5 HOH A 132 432 142 HOH HOH . F 5 HOH A 133 433 184 HOH HOH . F 5 HOH A 134 434 95 HOH HOH . F 5 HOH A 135 435 176 HOH HOH . F 5 HOH A 136 436 22 HOH HOH . F 5 HOH A 137 437 200 HOH HOH . F 5 HOH A 138 438 58 HOH HOH . F 5 HOH A 139 439 33 HOH HOH . F 5 HOH A 140 440 41 HOH HOH . F 5 HOH A 141 441 11 HOH HOH . F 5 HOH A 142 442 29 HOH HOH . F 5 HOH A 143 443 111 HOH HOH . F 5 HOH A 144 444 108 HOH HOH . F 5 HOH A 145 445 49 HOH HOH . F 5 HOH A 146 446 206 HOH HOH . F 5 HOH A 147 447 72 HOH HOH . F 5 HOH A 148 448 147 HOH HOH . F 5 HOH A 149 449 198 HOH HOH . F 5 HOH A 150 450 68 HOH HOH . F 5 HOH A 151 451 71 HOH HOH . F 5 HOH A 152 452 92 HOH HOH . F 5 HOH A 153 453 106 HOH HOH . F 5 HOH A 154 454 55 HOH HOH . F 5 HOH A 155 455 152 HOH HOH . F 5 HOH A 156 456 215 HOH HOH . F 5 HOH A 157 457 15 HOH HOH . F 5 HOH A 158 458 64 HOH HOH . F 5 HOH A 159 459 216 HOH HOH . F 5 HOH A 160 460 32 HOH HOH . F 5 HOH A 161 461 6 HOH HOH . F 5 HOH A 162 462 230 HOH HOH . F 5 HOH A 163 463 9 HOH HOH . F 5 HOH A 164 464 211 HOH HOH . F 5 HOH A 165 465 132 HOH HOH . F 5 HOH A 166 466 185 HOH HOH . F 5 HOH A 167 467 98 HOH HOH . F 5 HOH A 168 468 193 HOH HOH . F 5 HOH A 169 469 223 HOH HOH . F 5 HOH A 170 470 139 HOH HOH . F 5 HOH A 171 471 83 HOH HOH . F 5 HOH A 172 472 145 HOH HOH . F 5 HOH A 173 473 84 HOH HOH . F 5 HOH A 174 474 229 HOH HOH . F 5 HOH A 175 475 187 HOH HOH . F 5 HOH A 176 476 73 HOH HOH . F 5 HOH A 177 477 173 HOH HOH . F 5 HOH A 178 478 160 HOH HOH . F 5 HOH A 179 479 191 HOH HOH . F 5 HOH A 180 480 61 HOH HOH . F 5 HOH A 181 481 159 HOH HOH . F 5 HOH A 182 482 196 HOH HOH . F 5 HOH A 183 483 203 HOH HOH . F 5 HOH A 184 484 135 HOH HOH . F 5 HOH A 185 485 231 HOH HOH . F 5 HOH A 186 486 163 HOH HOH . F 5 HOH A 187 487 46 HOH HOH . F 5 HOH A 188 488 164 HOH HOH . F 5 HOH A 189 489 97 HOH HOH . F 5 HOH A 190 490 154 HOH HOH . F 5 HOH A 191 491 134 HOH HOH . F 5 HOH A 192 492 144 HOH HOH . F 5 HOH A 193 493 169 HOH HOH . F 5 HOH A 194 494 141 HOH HOH . F 5 HOH A 195 495 161 HOH HOH . F 5 HOH A 196 496 204 HOH HOH . F 5 HOH A 197 497 51 HOH HOH . F 5 HOH A 198 498 157 HOH HOH . F 5 HOH A 199 499 105 HOH HOH . F 5 HOH A 200 500 129 HOH HOH . F 5 HOH A 201 501 156 HOH HOH . F 5 HOH A 202 502 167 HOH HOH . F 5 HOH A 203 503 37 HOH HOH . F 5 HOH A 204 504 146 HOH HOH . F 5 HOH A 205 505 170 HOH HOH . F 5 HOH A 206 506 30 HOH HOH . F 5 HOH A 207 507 66 HOH HOH . F 5 HOH A 208 508 226 HOH HOH . F 5 HOH A 209 509 227 HOH HOH . F 5 HOH A 210 510 172 HOH HOH . F 5 HOH A 211 511 188 HOH HOH . F 5 HOH A 212 512 218 HOH HOH . F 5 HOH A 213 513 178 HOH HOH . F 5 HOH A 214 514 181 HOH HOH . F 5 HOH A 215 515 225 HOH HOH . F 5 HOH A 216 516 78 HOH HOH . F 5 HOH A 217 517 85 HOH HOH . F 5 HOH A 218 518 57 HOH HOH . F 5 HOH A 219 519 79 HOH HOH . F 5 HOH A 220 520 140 HOH HOH . F 5 HOH A 221 521 143 HOH HOH . F 5 HOH A 222 522 189 HOH HOH . F 5 HOH A 223 523 201 HOH HOH . F 5 HOH A 224 524 162 HOH HOH . F 5 HOH A 225 525 174 HOH HOH . F 5 HOH A 226 526 197 HOH HOH . F 5 HOH A 227 527 180 HOH HOH . F 5 HOH A 228 528 228 HOH HOH . F 5 HOH A 229 529 202 HOH HOH . F 5 HOH A 230 530 219 HOH HOH . F 5 HOH A 231 531 220 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol ZN _atom_site.label_atom_id ZN _atom_site.label_comp_id ZN _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id C _atom_site.label_entity_id 3 _atom_site.Cartn_x 1.479 _atom_site.Cartn_y 22.675 _atom_site.Cartn_z -5.305 _atom_site.occupancy 0.17 _atom_site.B_iso_or_equiv 27.58 _atom_site.pdbx_formal_charge 2 _atom_site.auth_atom_id ZN _atom_site.auth_comp_id ZN _atom_site.auth_seq_id 202 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 22 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 283 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 1 #