data_6ZPT # _model_server_result.job_id 40vSLV2hvHez41srRLzjeA _model_server_result.datetime_utc '2024-11-27 01:01:03' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6zpt # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"EA","auth_seq_id":709}' # _entry.id 6ZPT # _exptl.entry_id 6ZPT _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 40.078 _entity.id 8 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CALCIUM ION' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 98.631 _cell.angle_beta 89.629 _cell.angle_gamma 111.147 _cell.entry_id 6ZPT _cell.length_a 73.65 _cell.length_b 99.257 _cell.length_c 127.98 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6ZPT _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall 'P 1' _symmetry.space_group_name_H-M 'P 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 ? monomeric 1 author_defined_assembly 3 ? monomeric 1 author_defined_assembly 4 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,E,F,I,J,K,L,M,N,MA 1 1 B,O,P,Q,R,S,T,U,V,NA 2 1 C,G,W,X,Y,Z,AA,BA,CA,DA,EA,OA 3 1 D,H,FA,GA,HA,IA,JA,KA,LA,PA 4 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 8 N N N ? 8 V N N ? 8 EA N N ? 8 LA N N # loop_ _pdbx_entity_branch.entity_id _pdbx_entity_branch.type 2 oligosaccharide 3 oligosaccharide # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.details _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.atom_stereo_config_1 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.atom_stereo_config_2 _pdbx_entity_branch_link.value_order 1 ? 2 2 1 NAG NAG C1 O1 . O4 HO4 . sing 2 ? 3 2 1 FUC NAG C1 O1 . O6 HO6 . sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 2 n E NAG 1 E 1 NAG A 701 NAG 2 n E NAG 2 E 2 NAG A 702 NAG 3 n F NAG 1 F 1 NAG A 703 NAG 3 n F FUC 2 F 2 FUC A 704 FUC 3 n G NAG 1 G 1 NAG C 702 NAG 3 n G FUC 2 G 2 FUC C 703 FUC 3 n H NAG 1 H 1 NAG D 701 NAG 3 n H FUC 2 H 2 FUC D 702 FUC # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 128 A CYS 128 1_555 A SG CYS 136 A CYS 136 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf2 A SG CYS 330 A CYS 330 1_555 A SG CYS 348 A CYS 348 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf3 A SG CYS 516 A CYS 516 1_555 A SG CYS 528 A CYS 528 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf4 B SG CYS 128 B CYS 128 1_555 B SG CYS 136 B CYS 136 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf5 B SG CYS 330 B CYS 330 1_555 B SG CYS 348 B CYS 348 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? disulf ? disulf6 B SG CYS 516 B CYS 516 1_555 B SG CYS 528 B CYS 528 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf7 C SG CYS 128 C CYS 128 1_555 C SG CYS 136 C CYS 136 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf8 C SG CYS 330 C CYS 330 1_555 C SG CYS 348 C CYS 348 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf9 C SG CYS 516 C CYS 516 1_555 C SG CYS 528 C CYS 528 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf10 D SG CYS 128 D CYS 128 1_555 D SG CYS 136 D CYS 136 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf11 D SG CYS 330 D CYS 330 1_555 D SG CYS 348 D CYS 348 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? disulf ? disulf12 D SG CYS 516 D CYS 516 1_555 D SG CYS 528 D CYS 528 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? covale ? covale1 A ND2 ASN 45 A ASN 45 1_555 E C1 NAG . E NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.423 ? covale ? covale2 A ND2 ASN 480 A ASN 480 1_555 F C1 NAG . F NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.443 ? covale ? covale3 B ND2 ASN 45 B ASN 45 1_555 O C1 NAG . B NAG 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.439 ? covale ? covale4 B ND2 ASN 480 B ASN 480 1_555 P C1 NAG . B NAG 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.443 ? covale ? covale5 C ND2 ASN 45 C ASN 45 1_555 W C1 NAG . C NAG 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? covale ? covale6 C ND2 ASN 480 C ASN 480 1_555 G C1 NAG . G NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? covale ? covale7 D ND2 ASN 480 D ASN 480 1_555 H C1 NAG . H NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.444 ? covale ? covale8 E O4 NAG . E NAG 1 1_555 E C1 NAG . E NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.437 ? covale ? covale9 F O6 NAG . F NAG 1 1_555 F C1 FUC . F FUC 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.447 ? covale ? covale10 G O6 NAG . G NAG 1 1_555 G C1 FUC . G FUC 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.449 ? covale ? covale11 H O6 NAG . H NAG 1 1_555 H C1 FUC . H FUC 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.445 ? metalc ? metalc1 A NE2 HIS 361 A HIS 361 1_555 L ZN ZN . A ZN 704 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.314 ? metalc ? metalc2 A NE2 HIS 365 A HIS 365 1_555 L ZN ZN . A ZN 704 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? metalc ? metalc3 A OE1 GLU 389 A GLU 389 1_555 L ZN ZN . A ZN 704 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.397 ? metalc ? metalc4 I O21 BCN . A BCN 701 1_555 N CA CA . A CA 706 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.382 ? metalc ? metalc5 I O4 BCN . A BCN 701 1_555 N CA CA . A CA 706 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.339 ? metalc ? metalc6 I O6 BCN . A BCN 701 1_555 N CA CA . A CA 706 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.569 ? metalc ? metalc7 N CA CA . A CA 706 1_555 MA O HOH . A HOH 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.446 ? metalc ? metalc8 N CA CA . A CA 706 1_555 MA O HOH . A HOH 812 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.428 ? metalc ? metalc9 B NE2 HIS 361 B HIS 361 1_555 T ZN ZN . B ZN 706 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.122 ? metalc ? metalc10 B NE2 HIS 365 B HIS 365 1_555 T ZN ZN . B ZN 706 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.052 ? metalc ? metalc11 B OE1 GLU 389 B GLU 389 1_555 T ZN ZN . B ZN 706 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.84 ? metalc ? metalc12 Q O22 BCN . B BCN 703 1_555 V CA CA . B CA 708 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.397 ? metalc ? metalc13 Q O4 BCN . B BCN 703 1_555 V CA CA . B CA 708 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.467 ? metalc ? metalc14 Q O6 BCN . B BCN 703 1_555 V CA CA . B CA 708 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.469 ? metalc ? metalc15 V CA CA . B CA 708 1_555 NA O HOH . B HOH 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.417 ? metalc ? metalc16 V CA CA . B CA 708 1_555 NA O HOH . B HOH 805 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.753 ? metalc ? metalc17 V CA CA . B CA 708 1_555 NA O HOH . B HOH 809 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.49 ? metalc ? metalc18 C NE2 HIS 361 C HIS 361 1_555 CA ZN ZN . C ZN 707 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.338 ? metalc ? metalc19 C NE2 HIS 365 C HIS 365 1_555 CA ZN ZN . C ZN 707 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.103 ? metalc ? metalc20 C OE1 GLU 389 C GLU 389 1_555 CA ZN ZN . C ZN 707 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.937 ? metalc ? metalc21 BA O22 BCN . C BCN 706 1_555 EA CA CA . C CA 709 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.544 ? metalc ? metalc22 BA O4 BCN . C BCN 706 1_555 EA CA CA . C CA 709 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.6 ? metalc ? metalc23 BA O6 BCN . C BCN 706 1_555 EA CA CA . C CA 709 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.736 ? metalc ? metalc24 D NE2 HIS 361 D HIS 361 1_555 JA ZN ZN . D ZN 705 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.139 ? metalc ? metalc25 D NE2 HIS 365 D HIS 365 1_555 JA ZN ZN . D ZN 705 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.311 ? metalc ? metalc26 D OE1 GLU 389 D GLU 389 1_555 JA ZN ZN . D ZN 705 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.865 ? metalc ? metalc27 HA O21 BCN . D BCN 703 1_555 LA CA CA . D CA 707 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.475 ? metalc ? metalc28 HA O4 BCN . D BCN 703 1_555 LA CA CA . D CA 707 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.48 ? metalc ? metalc29 HA O6 BCN . D BCN 703 1_555 LA CA CA . D CA 707 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.716 ? metalc ? metalc30 LA CA CA . D CA 707 1_555 PA O HOH . D HOH 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.685 ? # _chem_comp.formula 'Ca 2' _chem_comp.formula_weight 40.078 _chem_comp.id CA _chem_comp.mon_nstd_flag . _chem_comp.name 'CALCIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 6ZPT _atom_sites.fract_transf_matrix[1][1] 0.013578 _atom_sites.fract_transf_matrix[1][2] 0.005252 _atom_sites.fract_transf_matrix[1][3] 0.000754 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010802 _atom_sites.fract_transf_matrix[2][3] 0.001733 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007914 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code I 4 BCN A 1 701 705 BCN BCN . J 5 PG0 A 1 702 706 PG0 PG0 . K 5 PG0 A 1 703 707 PG0 PG0 . L 6 ZN A 1 704 708 ZN ZN . M 7 CL A 1 705 709 CL CL . N 8 CA A 1 706 710 CA CA . O 9 NAG B 1 701 701 NAG NAG . P 9 NAG B 1 702 702 NAG NAG . Q 4 BCN B 1 703 703 BCN BCN . R 10 EDO B 1 704 704 EDO EDO . S 5 PG0 B 1 705 705 PG0 PG0 . T 6 ZN B 1 706 706 ZN ZN . U 7 CL B 1 707 707 CL CL . V 8 CA B 1 708 708 CA CA . W 9 NAG C 1 701 701 NAG NAG . X 10 EDO C 1 702 704 EDO EDO . Y 10 EDO C 1 703 705 EDO EDO . Z 10 EDO C 1 704 706 EDO EDO . AA 10 EDO C 1 705 707 EDO EDO . BA 4 BCN C 1 706 708 BCN BCN . CA 6 ZN C 1 707 709 ZN ZN . DA 7 CL C 1 708 710 CL CL . EA 8 CA C 1 709 711 CA CA . FA 10 EDO D 1 701 703 EDO EDO . GA 10 EDO D 1 702 704 EDO EDO . HA 4 BCN D 1 703 705 BCN BCN . IA 10 EDO D 1 704 706 EDO EDO . JA 6 ZN D 1 705 707 ZN ZN . KA 7 CL D 1 706 708 CL CL . LA 8 CA D 1 707 709 CA CA . MA 11 HOH A 1 801 801 HOH HOH . MA 11 HOH A 2 802 802 HOH HOH . MA 11 HOH A 3 803 803 HOH HOH . MA 11 HOH A 4 804 804 HOH HOH . MA 11 HOH A 5 805 805 HOH HOH . MA 11 HOH A 6 806 806 HOH HOH . MA 11 HOH A 7 807 807 HOH HOH . MA 11 HOH A 8 808 808 HOH HOH . MA 11 HOH A 9 809 809 HOH HOH . MA 11 HOH A 10 810 810 HOH HOH . MA 11 HOH A 11 811 811 HOH HOH . MA 11 HOH A 12 812 812 HOH HOH . MA 11 HOH A 13 813 813 HOH HOH . MA 11 HOH A 14 814 814 HOH HOH . MA 11 HOH A 15 815 815 HOH HOH . MA 11 HOH A 16 816 816 HOH HOH . MA 11 HOH A 17 817 817 HOH HOH . MA 11 HOH A 18 818 818 HOH HOH . MA 11 HOH A 19 819 819 HOH HOH . MA 11 HOH A 20 820 820 HOH HOH . MA 11 HOH A 21 821 821 HOH HOH . NA 11 HOH B 1 801 801 HOH HOH . NA 11 HOH B 2 802 802 HOH HOH . NA 11 HOH B 3 803 803 HOH HOH . NA 11 HOH B 4 804 804 HOH HOH . NA 11 HOH B 5 805 805 HOH HOH . NA 11 HOH B 6 806 806 HOH HOH . NA 11 HOH B 7 807 807 HOH HOH . NA 11 HOH B 8 808 808 HOH HOH . NA 11 HOH B 9 809 809 HOH HOH . NA 11 HOH B 10 810 810 HOH HOH . OA 11 HOH C 1 801 801 HOH HOH . OA 11 HOH C 2 802 802 HOH HOH . OA 11 HOH C 3 803 803 HOH HOH . OA 11 HOH C 4 804 804 HOH HOH . OA 11 HOH C 5 805 805 HOH HOH . OA 11 HOH C 6 806 806 HOH HOH . OA 11 HOH C 7 807 807 HOH HOH . OA 11 HOH C 8 808 808 HOH HOH . OA 11 HOH C 9 809 809 HOH HOH . OA 11 HOH C 10 810 810 HOH HOH . OA 11 HOH C 11 811 811 HOH HOH . OA 11 HOH C 12 812 812 HOH HOH . OA 11 HOH C 13 813 813 HOH HOH . OA 11 HOH C 14 814 814 HOH HOH . OA 11 HOH C 15 815 815 HOH HOH . OA 11 HOH C 16 816 816 HOH HOH . PA 11 HOH D 1 801 802 HOH HOH . PA 11 HOH D 2 802 801 HOH HOH . PA 11 HOH D 3 803 803 HOH HOH . PA 11 HOH D 4 804 804 HOH HOH . PA 11 HOH D 5 805 805 HOH HOH . PA 11 HOH D 6 806 806 HOH HOH . PA 11 HOH D 7 807 807 HOH HOH . PA 11 HOH D 8 808 808 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CA _atom_site.label_atom_id CA _atom_site.label_comp_id CA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id EA _atom_site.label_entity_id 8 _atom_site.Cartn_x -34.317 _atom_site.Cartn_y 33.324 _atom_site.Cartn_z -61.635 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 69.12 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id CA _atom_site.auth_comp_id CA _atom_site.auth_seq_id 709 _atom_site.auth_asym_id C _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 45 _model_server_stats.parse_time_ms 15 _model_server_stats.create_model_time_ms 53 _model_server_stats.query_time_ms 323 _model_server_stats.encode_time_ms 12 _model_server_stats.element_count 1 #