data_6ZQ2 # _model_server_result.job_id CMMVSxqOLpd5eE6BuBkr-Q _model_server_result.datetime_utc '2024-11-26 05:25:12' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6zq2 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":303}' # _entry.id 6ZQ2 # _exptl.entry_id 6ZQ2 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 6ZQ2 _cell.length_a 54.803 _cell.length_b 54.803 _cell.length_c 108.558 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6ZQ2 _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall 'P 31 2"' _symmetry.space_group_name_H-M 'P 31 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 D N N ? 4 F N N ? 4 G N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 7 A CYS 22 1_555 A SG CYS 137 A CYS 157 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? disulf ? disulf2 A SG CYS 25 A CYS 42 1_555 A SG CYS 41 A CYS 58 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? disulf ? disulf3 A SG CYS 109 A CYS 128 1_555 A SG CYS 210 A CYS 235 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? disulf ? disulf4 A SG CYS 116 A CYS 136 1_555 A SG CYS 183 A CYS 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? disulf ? disulf5 A SG CYS 148 A CYS 168 1_555 A SG CYS 162 A CYS 182 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf6 A SG CYS 173 A CYS 193 1_555 A SG CYS 197 A CYS 222 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? metalc ? metalc1 A OE1 GLU 52 A GLU 70 1_555 C CA CA . A CA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.259 ? metalc ? metalc2 A O ASN 54 A ASN 72 1_555 C CA CA . A CA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.341 ? metalc ? metalc3 A O VAL 57 A VAL 75 1_555 C CA CA . A CA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.286 ? metalc ? metalc4 A OE2 GLU 62 A GLU 80 1_555 C CA CA . A CA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.329 ? metalc ? metalc5 C CA CA . A CA 302 1_555 H O HOH . A HOH 406 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.354 ? metalc ? metalc6 C CA CA . A CA 302 1_555 H O HOH . A HOH 492 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.377 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 188 n n C1 C2 GOL sing 189 n n C1 H11 GOL sing 190 n n C1 H12 GOL sing 191 n n O1 HO1 GOL sing 192 n n C2 O2 GOL sing 193 n n C2 C3 GOL sing 194 n n C2 H2 GOL sing 195 n n O2 HO2 GOL sing 196 n n C3 O3 GOL sing 197 n n C3 H31 GOL sing 198 n n C3 H32 GOL sing 199 n n O3 HO3 GOL sing 200 n n # _atom_sites.entry_id 6ZQ2 _atom_sites.fract_transf_matrix[1][1] 0.018247 _atom_sites.fract_transf_matrix[1][2] 0.010535 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.02107 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009212 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 32U A 1 301 1 32U LIG . C 3 CA A 1 302 1 CA CA . D 4 GOL A 1 303 501 GOL GOL . E 5 SO4 A 1 304 801 SO4 SO4 . F 4 GOL A 1 305 901 GOL GOL . G 4 GOL A 1 306 1101 GOL GOL . H 6 HOH A 1 401 156 HOH HOH . H 6 HOH A 2 402 216 HOH HOH . H 6 HOH A 3 403 233 HOH HOH . H 6 HOH A 4 404 118 HOH HOH . H 6 HOH A 5 405 211 HOH HOH . H 6 HOH A 6 406 18 HOH HOH . H 6 HOH A 7 407 242 HOH HOH . H 6 HOH A 8 408 219 HOH HOH . H 6 HOH A 9 409 203 HOH HOH . H 6 HOH A 10 410 138 HOH HOH . H 6 HOH A 11 411 7 HOH HOH . H 6 HOH A 12 412 79 HOH HOH . H 6 HOH A 13 413 49 HOH HOH . H 6 HOH A 14 414 259 HOH HOH . H 6 HOH A 15 415 119 HOH HOH . H 6 HOH A 16 416 66 HOH HOH . H 6 HOH A 17 417 147 HOH HOH . H 6 HOH A 18 418 74 HOH HOH . H 6 HOH A 19 419 72 HOH HOH . H 6 HOH A 20 420 263 HOH HOH . H 6 HOH A 21 421 63 HOH HOH . H 6 HOH A 22 422 58 HOH HOH . H 6 HOH A 23 423 4 HOH HOH . H 6 HOH A 24 424 140 HOH HOH . H 6 HOH A 25 425 262 HOH HOH . H 6 HOH A 26 426 94 HOH HOH . H 6 HOH A 27 427 82 HOH HOH . H 6 HOH A 28 428 71 HOH HOH . H 6 HOH A 29 429 236 HOH HOH . H 6 HOH A 30 430 21 HOH HOH . H 6 HOH A 31 431 251 HOH HOH . H 6 HOH A 32 432 89 HOH HOH . H 6 HOH A 33 433 176 HOH HOH . H 6 HOH A 34 434 252 HOH HOH . H 6 HOH A 35 435 57 HOH HOH . H 6 HOH A 36 436 202 HOH HOH . H 6 HOH A 37 437 213 HOH HOH . H 6 HOH A 38 438 84 HOH HOH . H 6 HOH A 39 439 97 HOH HOH . H 6 HOH A 40 440 6 HOH HOH . H 6 HOH A 41 441 125 HOH HOH . H 6 HOH A 42 442 155 HOH HOH . H 6 HOH A 43 443 217 HOH HOH . H 6 HOH A 44 444 23 HOH HOH . H 6 HOH A 45 445 103 HOH HOH . H 6 HOH A 46 446 113 HOH HOH . H 6 HOH A 47 447 60 HOH HOH . H 6 HOH A 48 448 187 HOH HOH . H 6 HOH A 49 449 20 HOH HOH . H 6 HOH A 50 450 50 HOH HOH . H 6 HOH A 51 451 240 HOH HOH . H 6 HOH A 52 452 257 HOH HOH . H 6 HOH A 53 453 220 HOH HOH . H 6 HOH A 54 454 246 HOH HOH . H 6 HOH A 55 455 64 HOH HOH . H 6 HOH A 56 456 45 HOH HOH . H 6 HOH A 57 457 11 HOH HOH . H 6 HOH A 58 458 13 HOH HOH . H 6 HOH A 59 459 27 HOH HOH . H 6 HOH A 60 460 54 HOH HOH . H 6 HOH A 61 461 17 HOH HOH . H 6 HOH A 62 462 237 HOH HOH . H 6 HOH A 63 463 9 HOH HOH . H 6 HOH A 64 464 8 HOH HOH . H 6 HOH A 65 465 152 HOH HOH . H 6 HOH A 66 466 228 HOH HOH . H 6 HOH A 67 467 14 HOH HOH . H 6 HOH A 68 468 161 HOH HOH . H 6 HOH A 69 469 101 HOH HOH . H 6 HOH A 70 470 38 HOH HOH . H 6 HOH A 71 471 80 HOH HOH . H 6 HOH A 72 472 16 HOH HOH . H 6 HOH A 73 473 121 HOH HOH . H 6 HOH A 74 474 25 HOH HOH . H 6 HOH A 75 475 120 HOH HOH . H 6 HOH A 76 476 136 HOH HOH . H 6 HOH A 77 477 87 HOH HOH . H 6 HOH A 78 478 109 HOH HOH . H 6 HOH A 79 479 93 HOH HOH . H 6 HOH A 80 480 165 HOH HOH . H 6 HOH A 81 481 100 HOH HOH . H 6 HOH A 82 482 65 HOH HOH . H 6 HOH A 83 483 166 HOH HOH . H 6 HOH A 84 484 78 HOH HOH . H 6 HOH A 85 485 201 HOH HOH . H 6 HOH A 86 486 139 HOH HOH . H 6 HOH A 87 487 126 HOH HOH . H 6 HOH A 88 488 19 HOH HOH . H 6 HOH A 89 489 12 HOH HOH . H 6 HOH A 90 490 39 HOH HOH . H 6 HOH A 91 491 42 HOH HOH . H 6 HOH A 92 492 1 HOH HOH . H 6 HOH A 93 493 153 HOH HOH . H 6 HOH A 94 494 55 HOH HOH . H 6 HOH A 95 495 43 HOH HOH . H 6 HOH A 96 496 250 HOH HOH . H 6 HOH A 97 497 143 HOH HOH . H 6 HOH A 98 498 36 HOH HOH . H 6 HOH A 99 499 29 HOH HOH . H 6 HOH A 100 500 107 HOH HOH . H 6 HOH A 101 501 235 HOH HOH . H 6 HOH A 102 502 52 HOH HOH . H 6 HOH A 103 503 10 HOH HOH . H 6 HOH A 104 504 5 HOH HOH . H 6 HOH A 105 505 226 HOH HOH . H 6 HOH A 106 506 62 HOH HOH . H 6 HOH A 107 507 209 HOH HOH . H 6 HOH A 108 508 37 HOH HOH . H 6 HOH A 109 509 61 HOH HOH . H 6 HOH A 110 510 223 HOH HOH . H 6 HOH A 111 511 227 HOH HOH . H 6 HOH A 112 512 24 HOH HOH . H 6 HOH A 113 513 41 HOH HOH . H 6 HOH A 114 514 245 HOH HOH . H 6 HOH A 115 515 164 HOH HOH . H 6 HOH A 116 516 95 HOH HOH . H 6 HOH A 117 517 32 HOH HOH . H 6 HOH A 118 518 53 HOH HOH . H 6 HOH A 119 519 102 HOH HOH . H 6 HOH A 120 520 28 HOH HOH . H 6 HOH A 121 521 142 HOH HOH . H 6 HOH A 122 522 177 HOH HOH . H 6 HOH A 123 523 34 HOH HOH . H 6 HOH A 124 524 51 HOH HOH . H 6 HOH A 125 525 76 HOH HOH . H 6 HOH A 126 526 133 HOH HOH . H 6 HOH A 127 527 35 HOH HOH . H 6 HOH A 128 528 256 HOH HOH . H 6 HOH A 129 529 112 HOH HOH . H 6 HOH A 130 530 129 HOH HOH . H 6 HOH A 131 531 162 HOH HOH . H 6 HOH A 132 532 225 HOH HOH . H 6 HOH A 133 533 158 HOH HOH . H 6 HOH A 134 534 48 HOH HOH . H 6 HOH A 135 535 88 HOH HOH . H 6 HOH A 136 536 200 HOH HOH . H 6 HOH A 137 537 135 HOH HOH . H 6 HOH A 138 538 26 HOH HOH . H 6 HOH A 139 539 44 HOH HOH . H 6 HOH A 140 540 30 HOH HOH . H 6 HOH A 141 541 106 HOH HOH . H 6 HOH A 142 542 243 HOH HOH . H 6 HOH A 143 543 116 HOH HOH . H 6 HOH A 144 544 148 HOH HOH . H 6 HOH A 145 545 145 HOH HOH . H 6 HOH A 146 546 46 HOH HOH . H 6 HOH A 147 547 204 HOH HOH . H 6 HOH A 148 548 146 HOH HOH . H 6 HOH A 149 549 22 HOH HOH . H 6 HOH A 150 550 131 HOH HOH . H 6 HOH A 151 551 77 HOH HOH . H 6 HOH A 152 552 59 HOH HOH . H 6 HOH A 153 553 199 HOH HOH . H 6 HOH A 154 554 192 HOH HOH . H 6 HOH A 155 555 110 HOH HOH . H 6 HOH A 156 556 31 HOH HOH . H 6 HOH A 157 557 90 HOH HOH . H 6 HOH A 158 558 137 HOH HOH . H 6 HOH A 159 559 218 HOH HOH . H 6 HOH A 160 560 173 HOH HOH . H 6 HOH A 161 561 81 HOH HOH . H 6 HOH A 162 562 123 HOH HOH . H 6 HOH A 163 563 144 HOH HOH . H 6 HOH A 164 564 206 HOH HOH . H 6 HOH A 165 565 69 HOH HOH . H 6 HOH A 166 566 56 HOH HOH . H 6 HOH A 167 567 68 HOH HOH . H 6 HOH A 168 568 15 HOH HOH . H 6 HOH A 169 569 159 HOH HOH . H 6 HOH A 170 570 40 HOH HOH . H 6 HOH A 171 571 248 HOH HOH . H 6 HOH A 172 572 124 HOH HOH . H 6 HOH A 173 573 151 HOH HOH . H 6 HOH A 174 574 160 HOH HOH . H 6 HOH A 175 575 122 HOH HOH . H 6 HOH A 176 576 73 HOH HOH . H 6 HOH A 177 577 238 HOH HOH . H 6 HOH A 178 578 168 HOH HOH . H 6 HOH A 179 579 208 HOH HOH . H 6 HOH A 180 580 96 HOH HOH . H 6 HOH A 181 581 244 HOH HOH . H 6 HOH A 182 582 232 HOH HOH . H 6 HOH A 183 583 186 HOH HOH . H 6 HOH A 184 584 222 HOH HOH . H 6 HOH A 185 585 261 HOH HOH . H 6 HOH A 186 586 258 HOH HOH . H 6 HOH A 187 587 260 HOH HOH . H 6 HOH A 188 588 114 HOH HOH . H 6 HOH A 189 589 194 HOH HOH . H 6 HOH A 190 590 253 HOH HOH . H 6 HOH A 191 591 234 HOH HOH . H 6 HOH A 192 592 247 HOH HOH . H 6 HOH A 193 593 163 HOH HOH . H 6 HOH A 194 594 193 HOH HOH . H 6 HOH A 195 595 189 HOH HOH . H 6 HOH A 196 596 127 HOH HOH . H 6 HOH A 197 597 132 HOH HOH . H 6 HOH A 198 598 91 HOH HOH . H 6 HOH A 199 599 134 HOH HOH . H 6 HOH A 200 600 99 HOH HOH . H 6 HOH A 201 601 224 HOH HOH . H 6 HOH A 202 602 195 HOH HOH . H 6 HOH A 203 603 111 HOH HOH . H 6 HOH A 204 604 172 HOH HOH . H 6 HOH A 205 605 215 HOH HOH . H 6 HOH A 206 606 150 HOH HOH . H 6 HOH A 207 607 108 HOH HOH . H 6 HOH A 208 608 212 HOH HOH . H 6 HOH A 209 609 169 HOH HOH . H 6 HOH A 210 610 241 HOH HOH . H 6 HOH A 211 611 230 HOH HOH . H 6 HOH A 212 612 188 HOH HOH . H 6 HOH A 213 613 128 HOH HOH . H 6 HOH A 214 614 181 HOH HOH . H 6 HOH A 215 615 67 HOH HOH . H 6 HOH A 216 616 75 HOH HOH . H 6 HOH A 217 617 221 HOH HOH . H 6 HOH A 218 618 149 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . D 4 10.496 -13.784 12.435 1 31.29 ? C1 GOL 303 A 1 HETATM 2 O O1 GOL . . . D 4 10.107 -15.051 12.926 1 30.03 ? O1 GOL 303 A 1 HETATM 3 C C2 GOL . . . D 4 11.789 -13.332 13.18 1 31.83 ? C2 GOL 303 A 1 HETATM 4 O O2 GOL . . . D 4 11.624 -13.294 14.554 1 31.44 ? O2 GOL 303 A 1 HETATM 5 C C3 GOL . . . D 4 12.124 -11.926 12.618 1 32.5 ? C3 GOL 303 A 1 HETATM 6 O O3 GOL . . . D 4 13.236 -11.458 13.333 1 34.18 ? O3 GOL 303 A 1 # _model_server_stats.io_time_ms 68 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 308 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 6 #