data_6ZR7 # _model_server_result.job_id qhdCqd5EU2v9rzx7kNW0GQ _model_server_result.datetime_utc '2024-10-19 08:40:01' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6zr7 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":1001}' # _entry.id 6ZR7 # _exptl.entry_id 6ZR7 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 113.061 _cell.angle_gamma 90 _cell.entry_id 6ZR7 _cell.length_a 78.599 _cell.length_b 71.421 _cell.length_c 92.174 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6ZR7 _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _pdbx_entity_branch.entity_id _pdbx_entity_branch.type 2 oligosaccharide 3 oligosaccharide # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.details _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.atom_stereo_config_1 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.atom_stereo_config_2 _pdbx_entity_branch_link.value_order 1 ? 2 2 1 GAL NAG C1 O1 . O4 HO4 . sing 2 ? 2 3 2 SIA GAL C2 O2 . O3 HO3 . sing 3 ? 3 2 1 GAL NAG C1 O1 . O4 HO4 . sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 2 n B NAG 1 A 1 NAG FFF 1 NAG 2 n B GAL 2 A 2 GAL FaF 2 GAL 2 n B SIA 3 A 3 SIA FbF 3 SIA 3 n C NAG 1 B 1 NAG GGG 1 NAG 3 n C GAL 2 B 2 GAL GaG 2 GAL 3 n D NAG 1 C 1 NAG BBB 1 NAG 3 n D GAL 2 C 2 GAL BaB 2 GAL # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 25 AAA CYS 617 1_555 A SG CYS 77 AAA CYS 669 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf2 A SG CYS 119 AAA CYS 711 1_555 A SG CYS 174 AAA CYS 766 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.007 ? disulf ? disulf3 A SG CYS 217 AAA CYS 809 1_555 A SG CYS 273 AAA CYS 865 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.014 ? covale ? covale1 A ND2 ASN 74 AAA ASN 666 1_555 D C1 NAG . C NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.457 ? covale ? covale2 A ND2 ASN 118 AAA ASN 710 1_555 G C1 NAG . AAA NAG 1003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.432 ? covale ? covale3 A ND2 ASN 156 AAA ASN 748 1_555 C C1 NAG . B NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.43 ? covale ? covale4 A ND2 ASN 203 AAA ASN 795 1_555 B C1 NAG . A NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.428 ? covale ? covale5 B O4 NAG . A NAG 1 1_555 B C1 GAL . A GAL 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.358 ? covale ? covale6 B O3 GAL . A GAL 2 1_555 B C2 SIA . A SIA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.46 ? covale ? covale7 C O4 NAG . B NAG 1 1_555 C C1 GAL . B GAL 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.346 ? covale ? covale8 D O4 NAG . C NAG 1 1_555 D C1 GAL . C GAL 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.351 ? metalc ? metalc1 A OE1 GLU 87 AAA GLU 679 1_555 F CA CA . AAA CA 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.338 ? metalc ? metalc2 A O PRO 238 AAA PRO 830 1_555 F CA CA . AAA CA 1002 1_554 ? ? ? ? ? ? ? ? ? ? ? ? 2.361 ? metalc ? metalc3 A O MET 240 AAA MET 832 1_555 F CA CA . AAA CA 1002 1_554 ? ? ? ? ? ? ? ? ? ? ? ? 2.378 ? metalc ? metalc4 A O TYR 243 AAA TYR 835 1_555 F CA CA . AAA CA 1002 1_554 ? ? ? ? ? ? ? ? ? ? ? ? 2.415 ? metalc ? metalc5 E O1 GOL . AAA GOL 1001 1_555 F CA CA . AAA CA 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.347 ? metalc ? metalc6 E O2 GOL . AAA GOL 1001 1_555 F CA CA . AAA CA 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.31 ? metalc ? metalc7 F CA CA . AAA CA 1002 1_555 H O HOH . AAA HOH 1174 1_556 ? ? ? ? ? ? ? ? ? ? ? ? 2.424 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 153 n n C1 C2 GOL sing 154 n n C1 H11 GOL sing 155 n n C1 H12 GOL sing 156 n n O1 HO1 GOL sing 157 n n C2 O2 GOL sing 158 n n C2 C3 GOL sing 159 n n C2 H2 GOL sing 160 n n O2 HO2 GOL sing 161 n n C3 O3 GOL sing 162 n n C3 H31 GOL sing 163 n n C3 H32 GOL sing 164 n n O3 HO3 GOL sing 165 n n # _atom_sites.entry_id 6ZR7 _atom_sites.fract_transf_matrix[1][1] 0.012723 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.005417 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014001 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011791 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 4 GOL AAA 1 1001 901 GOL GOL . F 5 CA AAA 1 1002 1 CA CA . G 6 NAG AAA 1 1003 1 NAG NAG . H 7 HOH AAA 1 1101 114 HOH HOH . H 7 HOH AAA 2 1102 163 HOH HOH . H 7 HOH AAA 3 1103 80 HOH HOH . H 7 HOH AAA 4 1104 87 HOH HOH . H 7 HOH AAA 5 1105 134 HOH HOH . H 7 HOH AAA 6 1106 15 HOH HOH . H 7 HOH AAA 7 1107 143 HOH HOH . H 7 HOH AAA 8 1108 34 HOH HOH . H 7 HOH AAA 9 1109 61 HOH HOH . H 7 HOH AAA 10 1110 26 HOH HOH . H 7 HOH AAA 11 1111 124 HOH HOH . H 7 HOH AAA 12 1112 130 HOH HOH . H 7 HOH AAA 13 1113 135 HOH HOH . H 7 HOH AAA 14 1114 70 HOH HOH . H 7 HOH AAA 15 1115 13 HOH HOH . H 7 HOH AAA 16 1116 140 HOH HOH . H 7 HOH AAA 17 1117 88 HOH HOH . H 7 HOH AAA 18 1118 9 HOH HOH . H 7 HOH AAA 19 1119 128 HOH HOH . H 7 HOH AAA 20 1120 82 HOH HOH . H 7 HOH AAA 21 1121 93 HOH HOH . H 7 HOH AAA 22 1122 74 HOH HOH . H 7 HOH AAA 23 1123 44 HOH HOH . H 7 HOH AAA 24 1124 91 HOH HOH . H 7 HOH AAA 25 1125 8 HOH HOH . H 7 HOH AAA 26 1126 58 HOH HOH . H 7 HOH AAA 27 1127 24 HOH HOH . H 7 HOH AAA 28 1128 42 HOH HOH . H 7 HOH AAA 29 1129 126 HOH HOH . H 7 HOH AAA 30 1130 48 HOH HOH . H 7 HOH AAA 31 1131 95 HOH HOH . H 7 HOH AAA 32 1132 16 HOH HOH . H 7 HOH AAA 33 1133 37 HOH HOH . H 7 HOH AAA 34 1134 14 HOH HOH . H 7 HOH AAA 35 1135 145 HOH HOH . H 7 HOH AAA 36 1136 121 HOH HOH . H 7 HOH AAA 37 1137 110 HOH HOH . H 7 HOH AAA 38 1138 50 HOH HOH . H 7 HOH AAA 39 1139 2 HOH HOH . H 7 HOH AAA 40 1140 35 HOH HOH . H 7 HOH AAA 41 1141 81 HOH HOH . H 7 HOH AAA 42 1142 69 HOH HOH . H 7 HOH AAA 43 1143 127 HOH HOH . H 7 HOH AAA 44 1144 72 HOH HOH . H 7 HOH AAA 45 1145 11 HOH HOH . H 7 HOH AAA 46 1146 96 HOH HOH . H 7 HOH AAA 47 1147 137 HOH HOH . H 7 HOH AAA 48 1148 75 HOH HOH . H 7 HOH AAA 49 1149 30 HOH HOH . H 7 HOH AAA 50 1150 97 HOH HOH . H 7 HOH AAA 51 1151 122 HOH HOH . H 7 HOH AAA 52 1152 146 HOH HOH . H 7 HOH AAA 53 1153 115 HOH HOH . H 7 HOH AAA 54 1154 40 HOH HOH . H 7 HOH AAA 55 1155 66 HOH HOH . H 7 HOH AAA 56 1156 79 HOH HOH . H 7 HOH AAA 57 1157 94 HOH HOH . H 7 HOH AAA 58 1158 86 HOH HOH . H 7 HOH AAA 59 1159 113 HOH HOH . H 7 HOH AAA 60 1160 161 HOH HOH . H 7 HOH AAA 61 1161 157 HOH HOH . H 7 HOH AAA 62 1162 51 HOH HOH . H 7 HOH AAA 63 1163 101 HOH HOH . H 7 HOH AAA 64 1164 85 HOH HOH . H 7 HOH AAA 65 1165 112 HOH HOH . H 7 HOH AAA 66 1166 29 HOH HOH . H 7 HOH AAA 67 1167 18 HOH HOH . H 7 HOH AAA 68 1168 17 HOH HOH . H 7 HOH AAA 69 1169 52 HOH HOH . H 7 HOH AAA 70 1170 38 HOH HOH . H 7 HOH AAA 71 1171 5 HOH HOH . H 7 HOH AAA 72 1172 53 HOH HOH . H 7 HOH AAA 73 1173 92 HOH HOH . H 7 HOH AAA 74 1174 43 HOH HOH . H 7 HOH AAA 75 1175 47 HOH HOH . H 7 HOH AAA 76 1176 33 HOH HOH . H 7 HOH AAA 77 1177 49 HOH HOH . H 7 HOH AAA 78 1178 89 HOH HOH . H 7 HOH AAA 79 1179 10 HOH HOH . H 7 HOH AAA 80 1180 68 HOH HOH . H 7 HOH AAA 81 1181 65 HOH HOH . H 7 HOH AAA 82 1182 27 HOH HOH . H 7 HOH AAA 83 1183 4 HOH HOH . H 7 HOH AAA 84 1184 3 HOH HOH . H 7 HOH AAA 85 1185 67 HOH HOH . H 7 HOH AAA 86 1186 105 HOH HOH . H 7 HOH AAA 87 1187 139 HOH HOH . H 7 HOH AAA 88 1188 36 HOH HOH . H 7 HOH AAA 89 1189 22 HOH HOH . H 7 HOH AAA 90 1190 7 HOH HOH . H 7 HOH AAA 91 1191 39 HOH HOH . H 7 HOH AAA 92 1192 123 HOH HOH . H 7 HOH AAA 93 1193 158 HOH HOH . H 7 HOH AAA 94 1194 41 HOH HOH . H 7 HOH AAA 95 1195 56 HOH HOH . H 7 HOH AAA 96 1196 21 HOH HOH . H 7 HOH AAA 97 1197 78 HOH HOH . H 7 HOH AAA 98 1198 142 HOH HOH . H 7 HOH AAA 99 1199 138 HOH HOH . H 7 HOH AAA 100 1200 63 HOH HOH . H 7 HOH AAA 101 1201 119 HOH HOH . H 7 HOH AAA 102 1202 64 HOH HOH . H 7 HOH AAA 103 1203 31 HOH HOH . H 7 HOH AAA 104 1204 73 HOH HOH . H 7 HOH AAA 105 1205 99 HOH HOH . H 7 HOH AAA 106 1206 154 HOH HOH . H 7 HOH AAA 107 1207 155 HOH HOH . H 7 HOH AAA 108 1208 19 HOH HOH . H 7 HOH AAA 109 1209 54 HOH HOH . H 7 HOH AAA 110 1210 1 HOH HOH . H 7 HOH AAA 111 1211 45 HOH HOH . H 7 HOH AAA 112 1212 20 HOH HOH . H 7 HOH AAA 113 1213 106 HOH HOH . H 7 HOH AAA 114 1214 12 HOH HOH . H 7 HOH AAA 115 1215 60 HOH HOH . H 7 HOH AAA 116 1216 167 HOH HOH . H 7 HOH AAA 117 1217 23 HOH HOH . H 7 HOH AAA 118 1218 131 HOH HOH . H 7 HOH AAA 119 1219 125 HOH HOH . H 7 HOH AAA 120 1220 129 HOH HOH . H 7 HOH AAA 121 1221 133 HOH HOH . H 7 HOH AAA 122 1222 28 HOH HOH . H 7 HOH AAA 123 1223 149 HOH HOH . H 7 HOH AAA 124 1224 136 HOH HOH . H 7 HOH AAA 125 1225 6 HOH HOH . H 7 HOH AAA 126 1226 156 HOH HOH . H 7 HOH AAA 127 1227 148 HOH HOH . H 7 HOH AAA 128 1228 109 HOH HOH . H 7 HOH AAA 129 1229 108 HOH HOH . H 7 HOH AAA 130 1230 25 HOH HOH . H 7 HOH AAA 131 1231 83 HOH HOH . H 7 HOH AAA 132 1232 59 HOH HOH . H 7 HOH AAA 133 1233 151 HOH HOH . H 7 HOH AAA 134 1234 102 HOH HOH . H 7 HOH AAA 135 1235 71 HOH HOH . H 7 HOH AAA 136 1236 116 HOH HOH . H 7 HOH AAA 137 1237 165 HOH HOH . H 7 HOH AAA 138 1238 90 HOH HOH . H 7 HOH AAA 139 1239 150 HOH HOH . H 7 HOH AAA 140 1240 166 HOH HOH . H 7 HOH AAA 141 1241 100 HOH HOH . H 7 HOH AAA 142 1242 153 HOH HOH . H 7 HOH AAA 143 1243 84 HOH HOH . H 7 HOH AAA 144 1244 46 HOH HOH . H 7 HOH AAA 145 1245 118 HOH HOH . H 7 HOH AAA 146 1246 144 HOH HOH . H 7 HOH AAA 147 1247 160 HOH HOH . H 7 HOH AAA 148 1248 62 HOH HOH . H 7 HOH AAA 149 1249 164 HOH HOH . H 7 HOH AAA 150 1250 159 HOH HOH . H 7 HOH AAA 151 1251 152 HOH HOH . H 7 HOH AAA 152 1252 117 HOH HOH . H 7 HOH AAA 153 1253 132 HOH HOH . H 7 HOH AAA 154 1254 147 HOH HOH . H 7 HOH AAA 155 1255 57 HOH HOH . H 7 HOH AAA 156 1256 111 HOH HOH . H 7 HOH AAA 157 1257 103 HOH HOH . H 7 HOH AAA 158 1258 76 HOH HOH . H 7 HOH AAA 159 1259 107 HOH HOH . H 7 HOH AAA 160 1260 98 HOH HOH . H 7 HOH AAA 161 1261 55 HOH HOH . H 7 HOH AAA 162 1262 120 HOH HOH . H 7 HOH AAA 163 1263 77 HOH HOH . H 7 HOH AAA 164 1264 141 HOH HOH . H 7 HOH AAA 165 1265 104 HOH HOH . H 7 HOH AAA 166 1266 32 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . E 4 -14.569 -5.624 75.117 1 53.92 ? C1 GOL 1001 AAA 1 HETATM 2 O O1 GOL . . . E 4 -15.319 -6.228 76.145 1 39.22 ? O1 GOL 1001 AAA 1 HETATM 3 C C2 GOL . . . E 4 -15.072 -4.256 74.802 1 72.14 ? C2 GOL 1001 AAA 1 HETATM 4 O O2 GOL . . . E 4 -15.415 -3.569 76.003 1 54.78 ? O2 GOL 1001 AAA 1 HETATM 5 C C3 GOL . . . E 4 -14.069 -3.533 73.926 1 69.57 ? C3 GOL 1001 AAA 1 HETATM 6 O O3 GOL . . . E 4 -14.211 -3.935 72.564 1 87.59 ? O3 GOL 1001 AAA 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 334 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 6 #