data_6ZRC # _model_server_result.job_id dbrnWfDUivasI1f3R9hMzg _model_server_result.datetime_utc '2024-11-08 15:43:08' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6zrc # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":101}' # _entry.id 6ZRC # _exptl.entry_id 6ZRC _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 106.165 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description PARA-XYLENE _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90.01 _cell.angle_gamma 90 _cell.entry_id 6ZRC _cell.length_a 71.96 _cell.length_b 96.325 _cell.length_c 149.3 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6ZRC _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,E 1 1 C,D,F,G 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 E N N ? 3 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 169 A CYS 167 1_555 A SG CYS 169 A CYS 167 2_655 ? ? ? ? ? ? ? ? ? ? ? ? 2.016 ? disulf ? disulf2 D SG CYS 169 B CYS 167 1_555 D SG CYS 169 B CYS 167 2_556 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? covale ? covale1 B C ACE 1 P ACE 1 1_555 B N CYS 2 P CYS 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale2 B SG CYS 2 P CYS 2 1_555 E C1' PXY . P PXY 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.808 ? covale ? covale3 B SG CYS 14 P CYS 14 1_555 E C4' PXY . P PXY 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.777 ? covale ? covale4 B C ALA 15 P ALA 15 1_555 B N NH2 16 P NH2 16 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.337 ? covale ? covale5 C C ACE 1 Q ACE 1 1_555 C N CYS 2 Q CYS 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.324 ? covale ? covale6 C SG CYS 2 Q CYS 2 1_555 F C1' PXY . Q PXY 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.821 ? covale ? covale7 C SG CYS 14 Q CYS 14 1_555 F C4' PXY . Q PXY 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.788 ? covale ? covale8 C C ALA 15 Q ALA 15 1_555 C N NH2 16 Q NH2 16 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.349 ? # _chem_comp.formula 'C8 H10' _chem_comp.formula_weight 106.165 _chem_comp.id PXY _chem_comp.mon_nstd_flag . _chem_comp.name PARA-XYLENE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 PXY doub 285 n y C1 C6 PXY sing 286 n y C1 C1' PXY sing 287 n n C2 C3 PXY sing 288 n y C2 H2 PXY sing 289 n n C3 C4 PXY doub 290 n y C3 H3 PXY sing 291 n n C4 C5 PXY sing 292 n y C4 C4' PXY sing 293 n n C5 C6 PXY doub 294 n y C5 H5 PXY sing 295 n n C6 H6 PXY sing 296 n n C1' "H1'1" PXY sing 297 n n C1' "H1'2" PXY sing 298 n n C1' "H1'3" PXY sing 299 n n C4' "H4'1" PXY sing 300 n n C4' "H4'2" PXY sing 301 n n C4' "H4'3" PXY sing 302 n n # _atom_sites.entry_id 6ZRC _atom_sites.fract_transf_matrix[1][1] 0.013897 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000003 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010382 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006698 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 PXY P 1 101 14 PXY BCI . F 3 PXY Q 1 101 14 PXY BCI . G 4 HOH B 1 501 5 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 PXY . . . F 3 -20.87 -1.223 26.818 1 129.39 ? C1 PXY 101 Q 1 HETATM 2 C C2 PXY . . . F 3 -22.182 -1.616 26.534 1 129.8 ? C2 PXY 101 Q 1 HETATM 3 C C3 PXY . . . F 3 -23.017 -2.001 27.585 1 128.42 ? C3 PXY 101 Q 1 HETATM 4 C C4 PXY . . . F 3 -22.538 -1.991 28.909 1 126.79 ? C4 PXY 101 Q 1 HETATM 5 C C5 PXY . . . F 3 -21.216 -1.601 29.182 1 126.23 ? C5 PXY 101 Q 1 HETATM 6 C C6 PXY . . . F 3 -20.379 -1.213 28.129 1 127.39 ? C6 PXY 101 Q 1 HETATM 7 C C1' PXY . . . F 3 -19.965 -0.806 25.677 1 130.41 ? C1' PXY 101 Q 1 HETATM 8 C C4' PXY . . . F 3 -23.514 -2.416 30.005 1 125.31 ? C4' PXY 101 Q 1 # _model_server_stats.io_time_ms 77 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 13 _model_server_stats.query_time_ms 281 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 8 #