data_6ZRD # _model_server_result.job_id -yxT8DQmDevhRVZ_9TirPg _model_server_result.datetime_utc '2024-11-08 19:04:20' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6zrd # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":101}' # _entry.id 6ZRD # _exptl.entry_id 6ZRD _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 120.192 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,3,5-trimethylbenzene _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 93.83 _cell.angle_gamma 90 _cell.entry_id 6ZRD _cell.length_a 74.4 _cell.length_b 59.97 _cell.length_c 100.22 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6ZRD _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,E,G 1 1 B,D,F,H 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 E N N ? 3 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 C C ACE 1 P ACE 1 1_555 C N CYS 2 P CYS 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale2 C SG CYS 2 P CYS 2 1_555 E C2 SEZ . P SEZ 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.849 ? covale ? covale3 C SG CYS 6 P CYS 6 1_555 E C1 SEZ . P SEZ 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.844 ? covale ? covale4 C SG CYS 14 P CYS 14 1_555 E CD SEZ . P SEZ 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.763 ? covale ? covale5 C C ALA 15 P ALA 15 1_555 C N NH2 16 P NH2 16 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? covale ? covale6 D C ACE 1 Q ACE 1 1_555 D N CYS 2 Q CYS 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale7 D SG CYS 2 Q CYS 2 1_555 F C2 SEZ . Q SEZ 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.779 ? covale ? covale8 D SG CYS 6 Q CYS 6 1_555 F C1 SEZ . Q SEZ 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.778 ? covale ? covale9 D SG CYS 14 Q CYS 14 1_555 F CD SEZ . Q SEZ 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.763 ? covale ? covale10 D C ALA 15 Q ALA 15 1_555 D N NH2 16 Q NH2 16 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? # _chem_comp.formula 'C9 H12' _chem_comp.formula_weight 120.192 _chem_comp.id SEZ _chem_comp.mon_nstd_flag . _chem_comp.name 1,3,5-trimethylbenzene _chem_comp.type non-polymer _chem_comp.pdbx_synonyms mesitylene # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 CT1 SEZ sing 298 n n CH CT1 SEZ doub 299 n y CH CT2 SEZ sing 300 n y C2 CT2 SEZ sing 301 n n CT1 CZ1 SEZ sing 302 n y CT2 CZ2 SEZ doub 303 n y CZ1 CE SEZ doub 304 n y CZ2 CE SEZ sing 305 n y CE CD SEZ sing 306 n n C1 H1 SEZ sing 307 n n C1 H2 SEZ sing 308 n n C2 H3 SEZ sing 309 n n C2 H4 SEZ sing 310 n n CD H5 SEZ sing 311 n n CD H6 SEZ sing 312 n n CZ1 H7 SEZ sing 313 n n CZ2 H8 SEZ sing 314 n n CH H9 SEZ sing 315 n n C1 H10 SEZ sing 316 n n C2 H11 SEZ sing 317 n n CD H12 SEZ sing 318 n n # _atom_sites.entry_id 6ZRD _atom_sites.fract_transf_matrix[1][1] 0.013441 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000899 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016675 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 SEZ P 1 101 17 SEZ SEZ . F 3 SEZ Q 1 101 17 SEZ SEZ . G 4 HOH A 1 501 5 HOH HOH . G 4 HOH A 2 502 1 HOH HOH . G 4 HOH A 3 503 4 HOH HOH . G 4 HOH A 4 504 7 HOH HOH . H 4 HOH B 1 501 6 HOH HOH . H 4 HOH B 2 502 3 HOH HOH . H 4 HOH B 3 503 2 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 SEZ . . . E 3 61.506 -39.998 34.162 1 89.44 ? C1 SEZ 101 P 1 HETATM 2 C C2 SEZ . . . E 3 65.601 -42.794 34.963 1 102.19 ? C2 SEZ 101 P 1 HETATM 3 C CD SEZ . . . E 3 66.06 -37.949 33.649 1 103.52 ? CD SEZ 101 P 1 HETATM 4 C CE SEZ . . . E 3 65.208 -39.162 33.943 1 101.88 ? CE SEZ 101 P 1 HETATM 5 C CZ1 SEZ . . . E 3 63.818 -39.034 33.917 1 99.41 ? CZ1 SEZ 101 P 1 HETATM 6 C CZ2 SEZ . . . E 3 65.788 -40.373 34.311 1 101.19 ? CZ2 SEZ 101 P 1 HETATM 7 C CH SEZ . . . E 3 63.59 -41.352 34.547 1 94.22 ? CH SEZ 101 P 1 HETATM 8 C CT1 SEZ . . . E 3 63.008 -40.131 34.209 1 98.47 ? CT1 SEZ 101 P 1 HETATM 9 C CT2 SEZ . . . E 3 64.978 -41.474 34.593 1 98.63 ? CT2 SEZ 101 P 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 14 _model_server_stats.query_time_ms 283 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 9 #