data_6ZRT # _model_server_result.job_id 7Knny7HKa2jMFtLthM9bPA _model_server_result.datetime_utc '2024-11-08 11:49:19' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6zrt # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":602}' # _entry.id 6ZRT # _exptl.entry_id 6ZRT _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 681.865 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (1S,3aR,6aS)-2-[(2S)-2-({(2S)-2-cyclohexyl-2-[(pyrazin-2-ylcarbonyl)amino]acetyl}amino)-3,3-dimethylbutanoyl]-N-[(2R,3S)-1-(cyclopropylamino)-2-hydroxy-1-oxohexan-3-yl]octahydrocyclopenta[c]pyrrole-1-carboxamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 101.42 _cell.angle_gamma 90 _cell.entry_id 6ZRT _cell.length_a 109.678 _cell.length_b 54.989 _cell.length_c 47.932 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6ZRT _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 -x,y,-z -1 0 0 0 1 0 0 0 -1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 145 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 145 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id C _struct_conn.ptnr2_label_atom_id CAI _struct_conn.ptnr2_label_comp_id SV6 _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id SV6 _struct_conn.ptnr2_auth_seq_id 602 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.805 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C36 H55 N7 O6' _chem_comp.formula_weight 681.865 _chem_comp.id SV6 _chem_comp.mon_nstd_flag . _chem_comp.name (1S,3aR,6aS)-2-[(2S)-2-({(2S)-2-cyclohexyl-2-[(pyrazin-2-ylcarbonyl)amino]acetyl}amino)-3,3-dimethylbutanoyl]-N-[(2R,3S)-1-(cyclopropylamino)-2-hydroxy-1-oxohexan-3-yl]octahydrocyclopenta[c]pyrrole-1-carboxamide _chem_comp.type peptide-like _chem_comp.pdbx_synonyms 'TELAPREVIR, bound form' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O C SV6 doub 299 n n C CA SV6 sing 300 n n C NAE SV6 sing 301 n n CD1 N SV6 sing 302 n n N CAV SV6 sing 303 n n N CA SV6 sing 304 n n CB CA SV6 sing 305 n n CA HA SV6 sing 306 n n CG CB SV6 sing 307 n n CB CBE SV6 sing 308 n n CB HB SV6 sing 309 n n CD1 CG SV6 sing 310 n n CG CD2 SV6 sing 311 n n CG HG SV6 sing 312 n n CAN NAA SV6 sing 313 n n NAA CAM SV6 sing 314 n n NAA HNAA SV6 sing 315 n n CAW NAC SV6 sing 316 n n CAX NAC SV6 sing 317 n n NAC HNAC SV6 sing 318 n n CBB NAD SV6 sing 319 n n NAD CAY SV6 sing 320 n n NAD HNAD SV6 sing 321 n n CAH NAE SV6 sing 322 n n NAE HNAE SV6 sing 323 n n CBO NAF SV6 doub 324 n y NAF CBN SV6 sing 325 n y CBP NAG SV6 doub 326 n y NAG CBQ SV6 sing 327 n y CAH CAI SV6 sing 328 n n CAH CAJ SV6 sing 329 n n CAH HAH SV6 sing 330 n n CAM CAI SV6 sing 331 n n OBR CAI SV6 sing 332 n n CAI HAI SV6 sing 333 n n CAK CAJ SV6 sing 334 n n CAJ HAJ SV6 sing 335 n n CAJ HAJA SV6 sing 336 n n CAK CAL SV6 sing 337 n n CAK HAK SV6 sing 338 n n CAK HAKA SV6 sing 339 n n CAL HAL SV6 sing 340 n n CAL HALA SV6 sing 341 n n CAL HALB SV6 sing 342 n n CAM OBS SV6 doub 343 n n CAP CAN SV6 sing 344 n n CAO CAN SV6 sing 345 n n CAN HAN SV6 sing 346 n n CAP CAO SV6 sing 347 n n CAO HAO SV6 sing 348 n n CAO HAOA SV6 sing 349 n n CAP HAP SV6 sing 350 n n CAP HAPA SV6 sing 351 n n CAW CAV SV6 sing 352 n n CAV OBT SV6 doub 353 n n CAZ CAW SV6 sing 354 n n CAW HAW SV6 sing 355 n n OBU CAX SV6 doub 356 n n CAX CAY SV6 sing 357 n n CAY CBH SV6 sing 358 n n CAY HAY SV6 sing 359 n n CBA CAZ SV6 sing 360 n n CBD CAZ SV6 sing 361 n n CAZ CBC SV6 sing 362 n n CBA HBA SV6 sing 363 n n CBA HBAA SV6 sing 364 n n CBA HBAB SV6 sing 365 n n CBN CBB SV6 sing 366 n n CBB OBW SV6 doub 367 n n CBC HBC SV6 sing 368 n n CBC HBCA SV6 sing 369 n n CBC HBCB SV6 sing 370 n n CBD HBD SV6 sing 371 n n CBD HBDA SV6 sing 372 n n CBD HBDB SV6 sing 373 n n CBF CBE SV6 sing 374 n n CBE HBE SV6 sing 375 n n CBE HBEA SV6 sing 376 n n CD2 CBF SV6 sing 377 n n CBF HBF SV6 sing 378 n n CBF HBFA SV6 sing 379 n n CBH CBM SV6 sing 380 n n CBH CBI SV6 sing 381 n n CBH HBH SV6 sing 382 n n CBI CBJ SV6 sing 383 n n CBI HBI SV6 sing 384 n n CBI HBIA SV6 sing 385 n n CBJ CBK SV6 sing 386 n n CBJ HBJ SV6 sing 387 n n CBJ HBJA SV6 sing 388 n n CBL CBK SV6 sing 389 n n CBK HBK SV6 sing 390 n n CBK HBKA SV6 sing 391 n n CBM CBL SV6 sing 392 n n CBL HBL SV6 sing 393 n n CBL HBLA SV6 sing 394 n n CBM HBM SV6 sing 395 n n CBM HBMA SV6 sing 396 n n CBQ CBN SV6 doub 397 n y CBP CBO SV6 sing 398 n y CBO HBO SV6 sing 399 n n CBP HBP SV6 sing 400 n n CBQ HBQ SV6 sing 401 n n OBR HOBR SV6 sing 402 n n CD1 HD1 SV6 sing 403 n n CD1 HD1A SV6 sing 404 n n CD2 HD2 SV6 sing 405 n n CD2 HD2A SV6 sing 406 n n # _atom_sites.entry_id 6ZRT _atom_sites.fract_transf_matrix[1][1] 0.009118 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001842 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.018185 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.021284 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 DMS A 1 601 601 DMS DMS . C 3 SV6 A 1 602 701 SV6 SV6 . D 4 HOH A 1 701 7 HOH HOH . D 4 HOH A 2 702 28 HOH HOH . D 4 HOH A 3 703 5 HOH HOH . D 4 HOH A 4 704 36 HOH HOH . D 4 HOH A 5 705 21 HOH HOH . D 4 HOH A 6 706 32 HOH HOH . D 4 HOH A 7 707 43 HOH HOH . D 4 HOH A 8 708 6 HOH HOH . D 4 HOH A 9 709 33 HOH HOH . D 4 HOH A 10 710 34 HOH HOH . D 4 HOH A 11 711 15 HOH HOH . D 4 HOH A 12 712 18 HOH HOH . D 4 HOH A 13 713 29 HOH HOH . D 4 HOH A 14 714 19 HOH HOH . D 4 HOH A 15 715 41 HOH HOH . D 4 HOH A 16 716 20 HOH HOH . D 4 HOH A 17 717 3 HOH HOH . D 4 HOH A 18 718 4 HOH HOH . D 4 HOH A 19 719 27 HOH HOH . D 4 HOH A 20 720 22 HOH HOH . D 4 HOH A 21 721 12 HOH HOH . D 4 HOH A 22 722 11 HOH HOH . D 4 HOH A 23 723 2 HOH HOH . D 4 HOH A 24 724 14 HOH HOH . D 4 HOH A 25 725 35 HOH HOH . D 4 HOH A 26 726 40 HOH HOH . D 4 HOH A 27 727 17 HOH HOH . D 4 HOH A 28 728 30 HOH HOH . D 4 HOH A 29 729 31 HOH HOH . D 4 HOH A 30 730 24 HOH HOH . D 4 HOH A 31 731 44 HOH HOH . D 4 HOH A 32 732 13 HOH HOH . D 4 HOH A 33 733 8 HOH HOH . D 4 HOH A 34 734 23 HOH HOH . D 4 HOH A 35 735 39 HOH HOH . D 4 HOH A 36 736 25 HOH HOH . D 4 HOH A 37 737 16 HOH HOH . D 4 HOH A 38 738 42 HOH HOH . D 4 HOH A 39 739 26 HOH HOH . D 4 HOH A 40 740 10 HOH HOH . D 4 HOH A 41 741 46 HOH HOH . D 4 HOH A 42 742 1 HOH HOH . D 4 HOH A 43 743 45 HOH HOH . D 4 HOH A 44 744 37 HOH HOH . D 4 HOH A 45 745 38 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CBN SV6 . . . C 3 11.963 22.868 26.256 1 49.22 ? CBN SV6 602 A 1 HETATM 2 C CBO SV6 . . . C 3 12.289 24.589 27.698 1 48.82 ? CBO SV6 602 A 1 HETATM 3 C CBP SV6 . . . C 3 12.604 23.692 28.694 1 53.62 ? CBP SV6 602 A 1 HETATM 4 C CBB SV6 . . . C 3 11.584 22.371 24.894 1 51.78 ? CBB SV6 602 A 1 HETATM 5 C CBQ SV6 . . . C 3 12.255 21.965 27.261 1 49.65 ? CBQ SV6 602 A 1 HETATM 6 O OBW SV6 . . . C 3 11.673 23.093 23.901 1 48.25 ? OBW SV6 602 A 1 HETATM 7 N NAF SV6 . . . C 3 11.962 24.189 26.47 1 53.85 ? NAF SV6 602 A 1 HETATM 8 N NAG SV6 . . . C 3 12.582 22.37 28.491 1 57.17 ? NAG SV6 602 A 1 HETATM 9 N NAD SV6 . . . C 3 11.133 21.114 24.872 1 47.17 ? NAD SV6 602 A 1 HETATM 10 C CAY SV6 . . . C 3 10.955 20.271 23.708 1 48.26 ? CAY SV6 602 A 1 HETATM 11 C CAX SV6 . . . C 3 10.011 19.154 24.169 1 48.37 ? CAX SV6 602 A 1 HETATM 12 O OBU SV6 . . . C 3 10.175 18.65 25.276 1 52.43 ? OBU SV6 602 A 1 HETATM 13 C CBH SV6 . . . C 3 12.378 19.9 23.243 1 47.05 ? CBH SV6 602 A 1 HETATM 14 C CBI SV6 . . . C 3 12.86 20.853 22.139 1 43.6 ? CBI SV6 602 A 1 HETATM 15 C CBJ SV6 . . . C 3 13.96 20.236 21.272 1 43.44 ? CBJ SV6 602 A 1 HETATM 16 C CBK SV6 . . . C 3 14.821 19.273 22.064 1 43.65 ? CBK SV6 602 A 1 HETATM 17 C CBL SV6 . . . C 3 14 18.082 22.532 1 46.74 ? CBL SV6 602 A 1 HETATM 18 C CBM SV6 . . . C 3 12.544 18.437 22.842 1 45.18 ? CBM SV6 602 A 1 HETATM 19 N NAC SV6 . . . C 3 9.033 18.767 23.348 1 46.92 ? NAC SV6 602 A 1 HETATM 20 C CAW SV6 . . . C 3 8.231 17.596 23.668 1 46.11 ? CAW SV6 602 A 1 HETATM 21 C CAZ SV6 . . . C 3 6.725 17.896 23.74 1 46.12 ? CAZ SV6 602 A 1 HETATM 22 C CBC SV6 . . . C 3 6.452 18.892 24.866 1 48.4 ? CBC SV6 602 A 1 HETATM 23 C CBD SV6 . . . C 3 5.961 16.609 24.065 1 48.13 ? CBD SV6 602 A 1 HETATM 24 C CBA SV6 . . . C 3 6.18 18.481 22.434 1 46.49 ? CBA SV6 602 A 1 HETATM 25 C CAV SV6 . . . C 3 8.63 16.41 22.774 1 45.02 ? CAV SV6 602 A 1 HETATM 26 O OBT SV6 . . . C 3 8.346 16.339 21.589 1 38.48 ? OBT SV6 602 A 1 HETATM 27 C C SV6 . . . C 3 8.233 13.255 22.71 1 49.23 ? C SV6 602 A 1 HETATM 28 N N SV6 . . . C 3 9.278 15.403 23.371 1 46.66 ? N SV6 602 A 1 HETATM 29 O O SV6 . . . C 3 7.697 12.848 23.74 1 48.77 ? O SV6 602 A 1 HETATM 30 C CA SV6 . . . C 3 9.511 14.098 22.75 1 48.72 ? CA SV6 602 A 1 HETATM 31 C CB SV6 . . . C 3 10.638 13.501 23.608 1 48.43 ? CB SV6 602 A 1 HETATM 32 C CG SV6 . . . C 3 10.521 14.201 24.988 1 49.94 ? CG SV6 602 A 1 HETATM 33 C CBE SV6 . . . C 3 12.09 13.768 23.154 1 47.6 ? CBE SV6 602 A 1 HETATM 34 C CBF SV6 . . . C 3 12.593 14.859 24.091 1 50.32 ? CBF SV6 602 A 1 HETATM 35 C CD1 SV6 . . . C 3 9.773 15.5 24.744 1 48.52 ? CD1 SV6 602 A 1 HETATM 36 C CD2 SV6 . . . C 3 11.977 14.459 25.394 1 51.74 ? CD2 SV6 602 A 1 HETATM 37 N NAA SV6 . . . C 3 5.208 9.392 22.15 1 43.8 ? NAA SV6 602 A 1 HETATM 38 N NAE SV6 . . . C 3 7.723 13.032 21.499 1 47.2 ? NAE SV6 602 A 1 HETATM 39 C CAH SV6 . . . C 3 6.43 12.363 21.287 1 46.09 ? CAH SV6 602 A 1 HETATM 40 C CAI SV6 . . . C 3 6.679 10.897 20.961 1 41.09 ? CAI SV6 602 A 1 HETATM 41 C CAJ SV6 . . . C 3 5.637 12.981 20.123 1 51.41 ? CAJ SV6 602 A 1 HETATM 42 C CAK SV6 . . . C 3 5.32 14.469 20.13 1 53.39 ? CAK SV6 602 A 1 HETATM 43 C CAL SV6 . . . C 3 5.13 15.019 18.695 1 49.62 ? CAL SV6 602 A 1 HETATM 44 C CAM SV6 . . . C 3 5.397 10.107 21.033 1 45.23 ? CAM SV6 602 A 1 HETATM 45 C CAN SV6 . . . C 3 4.025 8.602 22.348 1 49.05 ? CAN SV6 602 A 1 HETATM 46 C CAO SV6 . . . C 3 3.616 8.305 23.75 1 49.18 ? CAO SV6 602 A 1 HETATM 47 C CAP SV6 . . . C 3 2.82 9.263 22.929 1 51.38 ? CAP SV6 602 A 1 HETATM 48 O OBR SV6 . . . C 3 7.616 10.305 21.809 1 41.56 ? OBR SV6 602 A 1 HETATM 49 O OBS SV6 . . . C 3 4.605 10.115 20.093 1 35.71 ? OBS SV6 602 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 231 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 49 #