data_6ZRU # _model_server_result.job_id L79RNi4eFLreh8ikfqub1w _model_server_result.datetime_utc '2024-11-13 20:59:32' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6zru # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":503}' # _entry.id 6ZRU # _exptl.entry_id 6ZRU _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 521.693 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'boceprevir (bound form)' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 101.52 _cell.angle_gamma 90 _cell.entry_id 6ZRU _cell.length_a 113.763 _cell.length_b 53.535 _cell.length_c 45.876 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6ZRU _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 -x,y,-z -1 0 0 0 1 0 0 0 -1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 145 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 145 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id D _struct_conn.ptnr2_label_atom_id C03 _struct_conn.ptnr2_label_comp_id U5G _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id U5G _struct_conn.ptnr2_auth_seq_id 503 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.826 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C27 H47 N5 O5' _chem_comp.formula_weight 521.693 _chem_comp.id U5G _chem_comp.mon_nstd_flag . _chem_comp.name 'boceprevir (bound form)' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms (1R,2S,5S)-N-[(2S,3R)-4-amino-1-cyclobutyl-3-hydroxy-4-oxobutan-2-yl]-3-[N-(tert-butylcarbamoyl)-3-methyl-L-valyl]-6,6-dimethyl-3-azabicyclo[3.1.0]hexane-2-carboxamide # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O01 C02 U5G doub 367 n n C06 C07 U5G sing 368 n n C06 C05 U5G sing 369 n n C08 C07 U5G sing 370 n n C08 C09 U5G sing 371 n n C02 C03 U5G sing 372 n n C02 N37 U5G sing 373 n n C03 C05 U5G sing 374 n n C03 O04 U5G sing 375 n n C07 C10 U5G sing 376 n n C05 N11 U5G sing 377 n n N11 C12 U5G sing 378 n n O35 C21 U5G doub 379 n n C09 C10 U5G sing 380 n n C32 C30 U5G sing 381 n n C12 C13 U5G sing 382 n n C12 O36 U5G doub 383 n n C13 N20 U5G sing 384 n n C13 C14 U5G sing 385 n n C25 C23 U5G sing 386 n n C21 N20 U5G sing 387 n n C21 C22 U5G sing 388 n n N29 C30 U5G sing 389 n n N29 C28 U5G sing 390 n n N27 C28 U5G sing 391 n n N27 C22 U5G sing 392 n n C31 C30 U5G sing 393 n n C17 C16 U5G sing 394 n n C30 C33 U5G sing 395 n n N20 C19 U5G sing 396 n n C14 C16 U5G sing 397 n n C14 C15 U5G sing 398 n n C28 O34 U5G doub 399 n n C22 C23 U5G sing 400 n n C16 C18 U5G sing 401 n n C16 C15 U5G sing 402 n n C23 C24 U5G sing 403 n n C23 C26 U5G sing 404 n n C19 C15 U5G sing 405 n n N29 H1 U5G sing 406 n n C31 H2 U5G sing 407 n n C31 H3 U5G sing 408 n n C31 H4 U5G sing 409 n n C32 H5 U5G sing 410 n n C32 H6 U5G sing 411 n n C32 H7 U5G sing 412 n n C33 H8 U5G sing 413 n n C33 H9 U5G sing 414 n n C33 H10 U5G sing 415 n n N27 H11 U5G sing 416 n n C22 H12 U5G sing 417 n n C24 H13 U5G sing 418 n n C24 H14 U5G sing 419 n n C24 H15 U5G sing 420 n n C25 H16 U5G sing 421 n n C25 H17 U5G sing 422 n n C25 H18 U5G sing 423 n n C26 H19 U5G sing 424 n n C26 H20 U5G sing 425 n n C26 H21 U5G sing 426 n n C19 H22 U5G sing 427 n n C19 H23 U5G sing 428 n n C13 H24 U5G sing 429 n n C14 H25 U5G sing 430 n n C15 H26 U5G sing 431 n n C17 H27 U5G sing 432 n n C17 H28 U5G sing 433 n n C17 H29 U5G sing 434 n n C18 H30 U5G sing 435 n n C18 H31 U5G sing 436 n n C18 H32 U5G sing 437 n n N11 H33 U5G sing 438 n n C05 H34 U5G sing 439 n n C06 H35 U5G sing 440 n n C06 H36 U5G sing 441 n n C07 H37 U5G sing 442 n n C10 H38 U5G sing 443 n n C10 H39 U5G sing 444 n n C08 H40 U5G sing 445 n n C08 H41 U5G sing 446 n n C09 H42 U5G sing 447 n n C09 H43 U5G sing 448 n n O04 H44 U5G sing 449 n n C03 H45 U5G sing 450 n n N37 H46 U5G sing 451 n n N37 H47 U5G sing 452 n n # _atom_sites.entry_id 6ZRU _atom_sites.fract_transf_matrix[1][1] 0.00879 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001792 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.018679 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.022246 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 DMS A 1 501 501 DMS DMS . C 2 DMS A 1 502 601 DMS DMS . D 3 U5G A 1 503 701 U5G U5G . E 4 HOH A 1 601 19 HOH HOH . E 4 HOH A 2 602 5 HOH HOH . E 4 HOH A 3 603 17 HOH HOH . E 4 HOH A 4 604 13 HOH HOH . E 4 HOH A 5 605 11 HOH HOH . E 4 HOH A 6 606 12 HOH HOH . E 4 HOH A 7 607 16 HOH HOH . E 4 HOH A 8 608 7 HOH HOH . E 4 HOH A 9 609 6 HOH HOH . E 4 HOH A 10 610 8 HOH HOH . E 4 HOH A 11 611 20 HOH HOH . E 4 HOH A 12 612 15 HOH HOH . E 4 HOH A 13 613 2 HOH HOH . E 4 HOH A 14 614 22 HOH HOH . E 4 HOH A 15 615 18 HOH HOH . E 4 HOH A 16 616 3 HOH HOH . E 4 HOH A 17 617 9 HOH HOH . E 4 HOH A 18 618 10 HOH HOH . E 4 HOH A 19 619 4 HOH HOH . E 4 HOH A 20 620 14 HOH HOH . E 4 HOH A 21 621 23 HOH HOH . E 4 HOH A 22 622 1 HOH HOH . E 4 HOH A 23 623 21 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C28 U5G . . . D 3 -20.171 -19.491 16.257 1 64.11 ? C28 U5G 503 A 1 HETATM 2 N N29 U5G . . . D 3 -20.438 -20.35 15.254 1 66.83 ? N29 U5G 503 A 1 HETATM 3 O O34 U5G . . . D 3 -20.886 -19.361 17.26 1 59.8 ? O34 U5G 503 A 1 HETATM 4 C C30 U5G . . . D 3 -21.689 -21.115 15.055 1 68.97 ? C30 U5G 503 A 1 HETATM 5 C C31 U5G . . . D 3 -22.047 -21.865 16.335 1 68.48 ? C31 U5G 503 A 1 HETATM 6 C C32 U5G . . . D 3 -21.451 -22.114 13.92 1 63.89 ? C32 U5G 503 A 1 HETATM 7 C C33 U5G . . . D 3 -22.775 -20.103 14.689 1 61.45 ? C33 U5G 503 A 1 HETATM 8 N N27 U5G . . . D 3 -19.032 -18.779 16.095 1 60.36 ? N27 U5G 503 A 1 HETATM 9 C C22 U5G . . . D 3 -18.626 -17.75 17.027 1 51.94 ? C22 U5G 503 A 1 HETATM 10 C C23 U5G . . . D 3 -17.447 -18.189 17.905 1 51.2 ? C23 U5G 503 A 1 HETATM 11 C C24 U5G . . . D 3 -16.195 -18.555 17.109 1 52.4 ? C24 U5G 503 A 1 HETATM 12 C C25 U5G . . . D 3 -17.833 -19.426 18.723 1 57.02 ? C25 U5G 503 A 1 HETATM 13 C C26 U5G . . . D 3 -17.111 -17.035 18.846 1 50.32 ? C26 U5G 503 A 1 HETATM 14 C C21 U5G . . . D 3 -18.401 -16.453 16.252 1 52.12 ? C21 U5G 503 A 1 HETATM 15 O O35 U5G . . . D 3 -17.589 -16.361 15.335 1 48.51 ? O35 U5G 503 A 1 HETATM 16 N N20 U5G . . . D 3 -19.103 -15.385 16.652 1 54.14 ? N20 U5G 503 A 1 HETATM 17 C C19 U5G . . . D 3 -20.092 -15.292 17.737 1 48.97 ? C19 U5G 503 A 1 HETATM 18 C C13 U5G . . . D 3 -18.856 -14.128 15.959 1 51.54 ? C13 U5G 503 A 1 HETATM 19 C C14 U5G . . . D 3 -20.002 -13.244 16.372 1 51.93 ? C14 U5G 503 A 1 HETATM 20 C C15 U5G . . . D 3 -20.732 -13.95 17.501 1 50.66 ? C15 U5G 503 A 1 HETATM 21 C C16 U5G . . . D 3 -21.423 -13.706 16.167 1 55.36 ? C16 U5G 503 A 1 HETATM 22 C C17 U5G . . . D 3 -22.531 -12.667 16.194 1 56.34 ? C17 U5G 503 A 1 HETATM 23 C C18 U5G . . . D 3 -21.684 -14.86 15.21 1 48.49 ? C18 U5G 503 A 1 HETATM 24 C C12 U5G . . . D 3 -17.556 -13.541 16.465 1 53.48 ? C12 U5G 503 A 1 HETATM 25 O O36 U5G . . . D 3 -17.439 -13.293 17.664 1 50.64 ? O36 U5G 503 A 1 HETATM 26 N N11 U5G . . . D 3 -16.617 -13.302 15.541 1 47.93 ? N11 U5G 503 A 1 HETATM 27 C C05 U5G . . . D 3 -15.303 -12.716 15.872 1 54.96 ? C05 U5G 503 A 1 HETATM 28 C C06 U5G . . . D 3 -14.191 -13.652 15.385 1 56.97 ? C06 U5G 503 A 1 HETATM 29 C C07 U5G . . . D 3 -14.125 -14.923 16.234 1 68.27 ? C07 U5G 503 A 1 HETATM 30 C C10 U5G . . . D 3 -12.8 -15.703 16.336 1 71.69 ? C10 U5G 503 A 1 HETATM 31 C C08 U5G . . . D 3 -14.095 -14.771 17.768 1 67.47 ? C08 U5G 503 A 1 HETATM 32 C C09 U5G . . . D 3 -13.12 -15.95 17.824 1 72.03 ? C09 U5G 503 A 1 HETATM 33 O O04 U5G . . . D 3 -16.403 -10.609 15.878 1 54.07 ? O04 U5G 503 A 1 HETATM 34 C C03 U5G . . . D 3 -15.249 -11.242 15.41 1 54.16 ? C03 U5G 503 A 1 HETATM 35 O O01 U5G . . . D 3 -13.056 -10.413 15.519 1 52.67 ? O01 U5G 503 A 1 HETATM 36 C C02 U5G . . . D 3 -14.154 -10.452 16.009 1 53.23 ? C02 U5G 503 A 1 HETATM 37 N N37 U5G . . . D 3 -14.475 -9.685 17.205 1 59.41 1 N37 U5G 503 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 280 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 37 #