data_6ZS8
#
_model_server_result.job_id            GyZZf7k3uRLCg9dZqDQggw 
_model_server_result.datetime_utc      '2024-11-27 20:05:54' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6zs8 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"J","auth_seq_id":409}' 
#
_entry.id    6ZS8 
#
_exptl.entry_id    6ZS8 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              418.117 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            arsenoplatin-1 
_entity.pdbx_number_of_molecules    7 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            6ZS8 
_cell.length_a            78.703 
_cell.length_b            78.703 
_cell.length_c            34.462 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6ZS8 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        96 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 43 21 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 G N N 
? 4 H N N 
? 4 I N N 
? 4 J N N 
? 4 K N N 
? 4 L N N 
? 4 M N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 6 AAA CYS 6 1_555 A SG CYS 127 AAA CYS 127 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.053 ? 
disulf ? disulf2 A SG CYS 30 AAA CYS 30 1_555 A SG CYS 115 AAA CYS 115 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? 
disulf ? disulf3 A SG CYS 64 AAA CYS 64 1_555 A SG CYS 80 AAA CYS 80 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.067 ? 
disulf ? disulf4 A SG CYS 76 AAA CYS 76 1_555 A SG CYS 94 AAA CYS 94 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.006 ? 
metalc ? metalc1 A NE2 HIS 15 AAA HIS 15 1_555 G PT1 A6R . AAA A6R 406 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.191 ? 
metalc ? metalc2 A NZ LYS 33 AAA LYS 33 1_555 M PT1 A6R . AAA A6R 412 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.155 ? 
metalc ? metalc3 A O SER 60 AAA SER 60 1_555 O NA NA . AAA NA 414 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? 
metalc ? metalc4 A O CYS 64 AAA CYS 64 1_555 O NA NA . AAA NA 414 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.32 ? 
metalc ? metalc5 A OG SER 72 AAA SER 72 1_555 O NA NA . AAA NA 414 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.485 ? 
metalc ? metalc6 A O ARG 73 AAA ARG 73 1_555 O NA NA . AAA NA 414 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.452 ? 
metalc ? metalc7 A NZ LYS 96 AAA LYS 96 1_555 H PT1 A6R . AAA A6R 407 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.365 ? 
metalc ? metalc8 A NZ LYS 97 AAA LYS 97 1_555 L PT1 A6R . AAA A6R 411 1_555 ? B ? ? ? ? ? ? ? ? ? ? 1.951 ? 
metalc ? metalc9 E O2 NO3 . AAA NO3 404 1_555 O NA NA . AAA NA 414 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.064 ? 
metalc ? metalc10 E O3 NO3 . AAA NO3 404 1_555 O NA NA . AAA NA 414 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.55 ? 
metalc ? metalc11 H O3 A6R . AAA A6R 407 1_555 I PT1 A6R . AAA A6R 408 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.245 ? 
metalc ? metalc12 H O4 A6R . AAA A6R 407 1_555 J PT1 A6R . AAA A6R 409 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.242 ? 
metalc ? metalc13 K PT1 A6R . AAA A6R 410 1_555 P O HOH . AAA HOH 526 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.415 ? 
metalc ? metalc14 K PT1 A6R . AAA A6R 410 1_555 P O HOH . AAA HOH 553 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.769 ? 
metalc ? metalc15 K PT1 A6R . AAA A6R 410 1_555 P O HOH . AAA HOH 558 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.087 ? 
metalc ? metalc16 L PT1 A6R . AAA A6R 411 1_555 P O HOH . AAA HOH 546 1_556 ? ? ? ? ? ? ? ? ? ? ? ? 2.568 ? 
metalc ? metalc17 M PT1 A6R . AAA A6R 412 1_555 P O HOH . AAA HOH 549 3_444 ? ? ? ? ? ? ? ? ? ? ? ? 2.129 ? 
#
_chem_comp.formula           'C4 H8 As N2 O4 Pt' 
_chem_comp.formula_weight    418.117 
_chem_comp.id                A6R 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              arsenoplatin-1 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C2 C1 A6R sing 1 n n 
C3 C4 A6R sing 2 n n 
C3 O2 A6R sing 3 n n 
C3 N2 A6R doub 4 n n 
PT1 AS1 A6R sing 5 n n 
PT1 N1 A6R sing 6 n n 
PT1 N2 A6R sing 7 n n 
AS1 O1 A6R sing 8 n n 
AS1 O2 A6R sing 9 n n 
AS1 O3 A6R sing 10 n n 
AS1 O4 A6R sing 11 n n 
O1 C1 A6R sing 12 n n 
N1 C1 A6R doub 13 n n 
C2 H1 A6R sing 14 n n 
C2 H2 A6R sing 15 n n 
C2 H3 A6R sing 16 n n 
C4 H4 A6R sing 17 n n 
C4 H5 A6R sing 18 n n 
C4 H6 A6R sing 19 n n 
O3 H7 A6R sing 20 n n 
O4 H8 A6R sing 21 n n 
#
_atom_sites.entry_id                     6ZS8 
_atom_sites.fract_transf_matrix[1][1]    0.012706 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.012706 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.029017 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 NO3 AAA 1 401 401 NO3 NO3 . 
C 2 NO3 AAA 1 402 404 NO3 NO3 . 
D 3 EDO AAA 1 403 302 EDO EDO . 
E 2 NO3 AAA 1 404 406 NO3 NO3 . 
F 2 NO3 AAA 1 405 408 NO3 NO3 . 
G 4 A6R AAA 1 406 2 A6R PTS . 
H 4 A6R AAA 1 407 3 A6R PTS . 
I 4 A6R AAA 1 408 4 A6R PTS . 
J 4 A6R AAA 1 409 5 A6R PTS . 
K 4 A6R AAA 1 410 6 A6R PTS . 
L 4 A6R AAA 1 411 7 A6R PTS . 
M 4 A6R AAA 1 412 8 A6R PTS . 
N 5 DMS AAA 1 413 1 DMS DMS . 
O 6 NA AAA 1 414 1 NA NA . 
P 7 HOH AAA 1 501 18 HOH HOH . 
P 7 HOH AAA 2 502 2 HOH HOH . 
P 7 HOH AAA 3 503 49 HOH HOH . 
P 7 HOH AAA 4 504 38 HOH HOH . 
P 7 HOH AAA 5 505 31 HOH HOH . 
P 7 HOH AAA 6 506 8 HOH HOH . 
P 7 HOH AAA 7 507 23 HOH HOH . 
P 7 HOH AAA 8 508 10 HOH HOH . 
P 7 HOH AAA 9 509 14 HOH HOH . 
P 7 HOH AAA 10 510 13 HOH HOH . 
P 7 HOH AAA 11 511 25 HOH HOH . 
P 7 HOH AAA 12 512 1 HOH HOH . 
P 7 HOH AAA 13 513 37 HOH HOH . 
P 7 HOH AAA 14 514 51 HOH HOH . 
P 7 HOH AAA 15 515 39 HOH HOH . 
P 7 HOH AAA 16 516 64 HOH HOH . 
P 7 HOH AAA 17 517 16 HOH HOH . 
P 7 HOH AAA 18 518 32 HOH HOH . 
P 7 HOH AAA 19 519 40 HOH HOH . 
P 7 HOH AAA 20 520 62 HOH HOH . 
P 7 HOH AAA 21 521 11 HOH HOH . 
P 7 HOH AAA 22 522 55 HOH HOH . 
P 7 HOH AAA 23 523 54 HOH HOH . 
P 7 HOH AAA 24 524 56 HOH HOH . 
P 7 HOH AAA 25 525 6 HOH HOH . 
P 7 HOH AAA 26 526 58 HOH HOH . 
P 7 HOH AAA 27 527 19 HOH HOH . 
P 7 HOH AAA 28 528 28 HOH HOH . 
P 7 HOH AAA 29 529 9 HOH HOH . 
P 7 HOH AAA 30 530 61 HOH HOH . 
P 7 HOH AAA 31 531 34 HOH HOH . 
P 7 HOH AAA 32 532 12 HOH HOH . 
P 7 HOH AAA 33 533 21 HOH HOH . 
P 7 HOH AAA 34 534 33 HOH HOH . 
P 7 HOH AAA 35 535 63 HOH HOH . 
P 7 HOH AAA 36 536 22 HOH HOH . 
P 7 HOH AAA 37 537 30 HOH HOH . 
P 7 HOH AAA 38 538 43 HOH HOH . 
P 7 HOH AAA 39 539 24 HOH HOH . 
P 7 HOH AAA 40 540 7 HOH HOH . 
P 7 HOH AAA 41 541 3 HOH HOH . 
P 7 HOH AAA 42 542 46 HOH HOH . 
P 7 HOH AAA 43 543 20 HOH HOH . 
P 7 HOH AAA 44 544 47 HOH HOH . 
P 7 HOH AAA 45 545 4 HOH HOH . 
P 7 HOH AAA 46 546 29 HOH HOH . 
P 7 HOH AAA 47 547 45 HOH HOH . 
P 7 HOH AAA 48 548 17 HOH HOH . 
P 7 HOH AAA 49 549 53 HOH HOH . 
P 7 HOH AAA 50 550 57 HOH HOH . 
P 7 HOH AAA 51 551 60 HOH HOH . 
P 7 HOH AAA 52 552 44 HOH HOH . 
P 7 HOH AAA 53 553 50 HOH HOH . 
P 7 HOH AAA 54 554 52 HOH HOH . 
P 7 HOH AAA 55 555 41 HOH HOH . 
P 7 HOH AAA 56 556 27 HOH HOH . 
P 7 HOH AAA 57 557 26 HOH HOH . 
P 7 HOH AAA 58 558 59 HOH HOH . 
P 7 HOH AAA 59 559 36 HOH HOH . 
P 7 HOH AAA 60 560 42 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C2 A6R . . . J 4 19.005 -10.38 6.881 0.8 41.42 ? C2 A6R 409 AAA 1 
HETATM 2 C C3 A6R . . . J 4 20.012 -16.546 4.192 0.8 49.88 ? C3 A6R 409 AAA 1 
HETATM 3 C C4 A6R . . . J 4 20.352 -17.896 3.633 0.8 47.96 ? C4 A6R 409 AAA 1 
HETATM 4 PT PT1 A6R . . . J 4 18.37 -14.249 4.972 0.8 46.61 ? PT1 A6R 409 AAA 1 
HETATM 5 AS AS1 A6R . . . J 4 20.636 -14.069 5.457 0.8 52.66 ? AS1 A6R 409 AAA 1 
HETATM 6 O O1 A6R . . . J 4 20.382 -12.23 6.298 0.8 47.79 ? O1 A6R 409 AAA 1 
HETATM 7 O O2 A6R . . . J 4 21.022 -15.874 4.692 0.8 49.3 ? O2 A6R 409 AAA 1 
HETATM 8 O O3 A6R . . . J 4 21.668 -13.408 4.249 0.8 49.98 ? O3 A6R 409 AAA 1 
HETATM 9 O O4 A6R . . . J 4 21.47 -14.624 6.873 0.8 46.72 ? O4 A6R 409 AAA 1 
HETATM 10 N N1 A6R . . . J 4 18.16 -12.402 5.769 0.8 44.3 ? N1 A6R 409 AAA 1 
HETATM 11 N N2 A6R . . . J 4 18.808 -16.069 4.189 0.8 45.99 ? N2 A6R 409 AAA 1 
HETATM 12 C C1 A6R . . . J 4 19.168 -11.737 6.282 0.8 43.89 ? C1 A6R 409 AAA 1 
#
_model_server_stats.io_time_ms              8 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    2 
_model_server_stats.query_time_ms           274 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           12 
#