data_6ZS8 # _model_server_result.job_id 092k7glRRVZ_c3pYRNWPZQ _model_server_result.datetime_utc '2024-11-14 06:25:25' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6zs8 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"N","auth_seq_id":413}' # _entry.id 6ZS8 # _exptl.entry_id 6ZS8 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 78.133 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'DIMETHYL SULFOXIDE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6ZS8 _cell.length_a 78.703 _cell.length_b 78.703 _cell.length_c 34.462 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6ZS8 _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id N _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 6 AAA CYS 6 1_555 A SG CYS 127 AAA CYS 127 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.053 ? disulf ? disulf2 A SG CYS 30 AAA CYS 30 1_555 A SG CYS 115 AAA CYS 115 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? disulf ? disulf3 A SG CYS 64 AAA CYS 64 1_555 A SG CYS 80 AAA CYS 80 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.067 ? disulf ? disulf4 A SG CYS 76 AAA CYS 76 1_555 A SG CYS 94 AAA CYS 94 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.006 ? metalc ? metalc1 A NE2 HIS 15 AAA HIS 15 1_555 G PT1 A6R . AAA A6R 406 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.191 ? metalc ? metalc2 A NZ LYS 33 AAA LYS 33 1_555 M PT1 A6R . AAA A6R 412 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.155 ? metalc ? metalc3 A O SER 60 AAA SER 60 1_555 O NA NA . AAA NA 414 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? metalc ? metalc4 A O CYS 64 AAA CYS 64 1_555 O NA NA . AAA NA 414 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.32 ? metalc ? metalc5 A OG SER 72 AAA SER 72 1_555 O NA NA . AAA NA 414 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.485 ? metalc ? metalc6 A O ARG 73 AAA ARG 73 1_555 O NA NA . AAA NA 414 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.452 ? metalc ? metalc7 A NZ LYS 96 AAA LYS 96 1_555 H PT1 A6R . AAA A6R 407 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.365 ? metalc ? metalc8 A NZ LYS 97 AAA LYS 97 1_555 L PT1 A6R . AAA A6R 411 1_555 ? B ? ? ? ? ? ? ? ? ? ? 1.951 ? metalc ? metalc9 E O2 NO3 . AAA NO3 404 1_555 O NA NA . AAA NA 414 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.064 ? metalc ? metalc10 E O3 NO3 . AAA NO3 404 1_555 O NA NA . AAA NA 414 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.55 ? metalc ? metalc11 H O3 A6R . AAA A6R 407 1_555 I PT1 A6R . AAA A6R 408 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.245 ? metalc ? metalc12 H O4 A6R . AAA A6R 407 1_555 J PT1 A6R . AAA A6R 409 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.242 ? metalc ? metalc13 K PT1 A6R . AAA A6R 410 1_555 P O HOH . AAA HOH 526 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.415 ? metalc ? metalc14 K PT1 A6R . AAA A6R 410 1_555 P O HOH . AAA HOH 553 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.769 ? metalc ? metalc15 K PT1 A6R . AAA A6R 410 1_555 P O HOH . AAA HOH 558 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.087 ? metalc ? metalc16 L PT1 A6R . AAA A6R 411 1_555 P O HOH . AAA HOH 546 1_556 ? ? ? ? ? ? ? ? ? ? ? ? 2.568 ? metalc ? metalc17 M PT1 A6R . AAA A6R 412 1_555 P O HOH . AAA HOH 549 3_444 ? ? ? ? ? ? ? ? ? ? ? ? 2.129 ? # _chem_comp.formula 'C2 H6 O S' _chem_comp.formula_weight 78.133 _chem_comp.id DMS _chem_comp.mon_nstd_flag . _chem_comp.name 'DIMETHYL SULFOXIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag S O DMS doub 104 n n S C1 DMS sing 105 n n S C2 DMS sing 106 n n C1 H11 DMS sing 107 n n C1 H12 DMS sing 108 n n C1 H13 DMS sing 109 n n C2 H21 DMS sing 110 n n C2 H22 DMS sing 111 n n C2 H23 DMS sing 112 n n # _atom_sites.entry_id 6ZS8 _atom_sites.fract_transf_matrix[1][1] 0.012706 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012706 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.029017 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NO3 AAA 1 401 401 NO3 NO3 . C 2 NO3 AAA 1 402 404 NO3 NO3 . D 3 EDO AAA 1 403 302 EDO EDO . E 2 NO3 AAA 1 404 406 NO3 NO3 . F 2 NO3 AAA 1 405 408 NO3 NO3 . G 4 A6R AAA 1 406 2 A6R PTS . H 4 A6R AAA 1 407 3 A6R PTS . I 4 A6R AAA 1 408 4 A6R PTS . J 4 A6R AAA 1 409 5 A6R PTS . K 4 A6R AAA 1 410 6 A6R PTS . L 4 A6R AAA 1 411 7 A6R PTS . M 4 A6R AAA 1 412 8 A6R PTS . N 5 DMS AAA 1 413 1 DMS DMS . O 6 NA AAA 1 414 1 NA NA . P 7 HOH AAA 1 501 18 HOH HOH . P 7 HOH AAA 2 502 2 HOH HOH . P 7 HOH AAA 3 503 49 HOH HOH . P 7 HOH AAA 4 504 38 HOH HOH . P 7 HOH AAA 5 505 31 HOH HOH . P 7 HOH AAA 6 506 8 HOH HOH . P 7 HOH AAA 7 507 23 HOH HOH . P 7 HOH AAA 8 508 10 HOH HOH . P 7 HOH AAA 9 509 14 HOH HOH . P 7 HOH AAA 10 510 13 HOH HOH . P 7 HOH AAA 11 511 25 HOH HOH . P 7 HOH AAA 12 512 1 HOH HOH . P 7 HOH AAA 13 513 37 HOH HOH . P 7 HOH AAA 14 514 51 HOH HOH . P 7 HOH AAA 15 515 39 HOH HOH . P 7 HOH AAA 16 516 64 HOH HOH . P 7 HOH AAA 17 517 16 HOH HOH . P 7 HOH AAA 18 518 32 HOH HOH . P 7 HOH AAA 19 519 40 HOH HOH . P 7 HOH AAA 20 520 62 HOH HOH . P 7 HOH AAA 21 521 11 HOH HOH . P 7 HOH AAA 22 522 55 HOH HOH . P 7 HOH AAA 23 523 54 HOH HOH . P 7 HOH AAA 24 524 56 HOH HOH . P 7 HOH AAA 25 525 6 HOH HOH . P 7 HOH AAA 26 526 58 HOH HOH . P 7 HOH AAA 27 527 19 HOH HOH . P 7 HOH AAA 28 528 28 HOH HOH . P 7 HOH AAA 29 529 9 HOH HOH . P 7 HOH AAA 30 530 61 HOH HOH . P 7 HOH AAA 31 531 34 HOH HOH . P 7 HOH AAA 32 532 12 HOH HOH . P 7 HOH AAA 33 533 21 HOH HOH . P 7 HOH AAA 34 534 33 HOH HOH . P 7 HOH AAA 35 535 63 HOH HOH . P 7 HOH AAA 36 536 22 HOH HOH . P 7 HOH AAA 37 537 30 HOH HOH . P 7 HOH AAA 38 538 43 HOH HOH . P 7 HOH AAA 39 539 24 HOH HOH . P 7 HOH AAA 40 540 7 HOH HOH . P 7 HOH AAA 41 541 3 HOH HOH . P 7 HOH AAA 42 542 46 HOH HOH . P 7 HOH AAA 43 543 20 HOH HOH . P 7 HOH AAA 44 544 47 HOH HOH . P 7 HOH AAA 45 545 4 HOH HOH . P 7 HOH AAA 46 546 29 HOH HOH . P 7 HOH AAA 47 547 45 HOH HOH . P 7 HOH AAA 48 548 17 HOH HOH . P 7 HOH AAA 49 549 53 HOH HOH . P 7 HOH AAA 50 550 57 HOH HOH . P 7 HOH AAA 51 551 60 HOH HOH . P 7 HOH AAA 52 552 44 HOH HOH . P 7 HOH AAA 53 553 50 HOH HOH . P 7 HOH AAA 54 554 52 HOH HOH . P 7 HOH AAA 55 555 41 HOH HOH . P 7 HOH AAA 56 556 27 HOH HOH . P 7 HOH AAA 57 557 26 HOH HOH . P 7 HOH AAA 58 558 59 HOH HOH . P 7 HOH AAA 59 559 36 HOH HOH . P 7 HOH AAA 60 560 42 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 S S DMS . . . N 5 -0.244 -25.875 -16.183 1 39.77 ? S DMS 413 AAA 1 HETATM 2 O O DMS . . . N 5 -0.278 -24.852 -15.086 1 50.34 ? O DMS 413 AAA 1 HETATM 3 C C1 DMS . . . N 5 0.677 -27.231 -15.531 1 46.9 ? C1 DMS 413 AAA 1 HETATM 4 C C2 DMS . . . N 5 -1.831 -26.637 -16.098 1 43.92 ? C2 DMS 413 AAA 1 # _model_server_stats.io_time_ms 37 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 220 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 4 #