data_6ZSI
#
_model_server_result.job_id            -mvVKk9zP0zcQtYAw_U8Sg 
_model_server_result.datetime_utc      '2025-07-20 08:34:54' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6zsi 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"H","auth_seq_id":201}' 
#
_entry.id    6ZSI 
#
_exptl.entry_id    6ZSI 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              522.196 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          93.76 
_cell.angle_gamma         90 
_cell.entry_id            6ZSI 
_cell.length_a            116.36 
_cell.length_b            35.38 
_cell.length_c            165.67 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6ZSI 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA dimeric 2 author_and_software_defined_assembly 1 
PISA dimeric 2 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,E,F,G,K 1 1 
B,D,H,I,J,L,M 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 E N N 
? 3 H N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OG1 THR 24 A THR 22 1_555 G MG MG . A MG 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.1 ? 
metalc ? metalc2 A OG1 THR 42 A THR 40 1_555 G MG MG . A MG 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.132 ? 
metalc ? metalc3 E O3G GNP . A GNP 201 1_555 G MG MG . A MG 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
metalc ? metalc4 E O2B GNP . A GNP 201 1_555 G MG MG . A MG 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.912 ? 
metalc ? metalc5 G MG MG . A MG 203 1_555 K O HOH . A HOH 306 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.278 ? 
metalc ? metalc6 G MG MG . A MG 203 1_555 K O HOH . A HOH 311 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? 
metalc ? metalc7 B OG1 THR 24 B THR 22 1_555 J MG MG . B MG 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.109 ? 
metalc ? metalc8 B OG1 THR 42 B THR 40 1_555 J MG MG . B MG 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.071 ? 
metalc ? metalc9 H O3G GNP . B GNP 201 1_555 J MG MG . B MG 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.063 ? 
metalc ? metalc10 H O2B GNP . B GNP 201 1_555 J MG MG . B MG 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.937 ? 
metalc ? metalc11 J MG MG . B MG 203 1_555 L O HOH . B HOH 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.108 ? 
metalc ? metalc12 J MG MG . B MG 203 1_555 L O HOH . B HOH 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.129 ? 
#
_chem_comp.formula           'C10 H17 N6 O13 P3' 
_chem_comp.formula_weight    522.196 
_chem_comp.id                GNP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PG O1G GNP doub 129 n n 
PG O2G GNP sing 130 n n 
PG O3G GNP sing 131 n n 
PG N3B GNP sing 132 n n 
O2G HOG2 GNP sing 133 n n 
O3G HOG3 GNP sing 134 n n 
N3B PB GNP sing 135 n n 
N3B HNB3 GNP sing 136 n n 
PB O1B GNP doub 137 n n 
PB O2B GNP sing 138 n n 
PB O3A GNP sing 139 n n 
O2B HOB2 GNP sing 140 n n 
O3A PA GNP sing 141 n n 
PA O1A GNP doub 142 n n 
PA O2A GNP sing 143 n n 
PA O5' GNP sing 144 n n 
O2A HOA2 GNP sing 145 n n 
O5' C5' GNP sing 146 n n 
C5' C4' GNP sing 147 n n 
C5' "H5'2" GNP sing 148 n n 
C5' "H5'1" GNP sing 149 n n 
C4' O4' GNP sing 150 n n 
C4' C3' GNP sing 151 n n 
C4' H4' GNP sing 152 n n 
O4' C1' GNP sing 153 n n 
C3' O3' GNP sing 154 n n 
C3' C2' GNP sing 155 n n 
C3' H3' GNP sing 156 n n 
O3' HO3' GNP sing 157 n n 
C2' O2' GNP sing 158 n n 
C2' C1' GNP sing 159 n n 
C2' H2' GNP sing 160 n n 
O2' HO2' GNP sing 161 n n 
C1' N9 GNP sing 162 n n 
C1' H1' GNP sing 163 n n 
N9 C8 GNP sing 164 n y 
N9 C4 GNP sing 165 n y 
C8 N7 GNP doub 166 n y 
C8 H8 GNP sing 167 n n 
N7 C5 GNP sing 168 n y 
C5 C6 GNP sing 169 n y 
C5 C4 GNP doub 170 n y 
C6 O6 GNP doub 171 n n 
C6 N1 GNP sing 172 n y 
N1 C2 GNP sing 173 n y 
N1 HN1 GNP sing 174 n n 
C2 N2 GNP sing 175 n n 
C2 N3 GNP doub 176 n y 
N2 HN21 GNP sing 177 n n 
N2 HN22 GNP sing 178 n n 
N3 C4 GNP sing 179 n y 
#
_atom_sites.entry_id                     6ZSI 
_atom_sites.fract_transf_matrix[1][1]    0.008594 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.000564 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.028265 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.006049 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 3 GNP A 1 201 303 GNP GNP . 
F 4 PEG A 1 202 304 PEG PEG . 
G 5 MG A 1 203 305 MG MG . 
H 3 GNP B 1 201 303 GNP GNP . 
I 4 PEG B 1 202 304 PEG PEG . 
J 5 MG B 1 203 305 MG MG . 
K 6 HOH A 1 301 22 HOH HOH . 
K 6 HOH A 2 302 40 HOH HOH . 
K 6 HOH A 3 303 20 HOH HOH . 
K 6 HOH A 4 304 21 HOH HOH . 
K 6 HOH A 5 305 26 HOH HOH . 
K 6 HOH A 6 306 4 HOH HOH . 
K 6 HOH A 7 307 19 HOH HOH . 
K 6 HOH A 8 308 28 HOH HOH . 
K 6 HOH A 9 309 23 HOH HOH . 
K 6 HOH A 10 310 8 HOH HOH . 
K 6 HOH A 11 311 7 HOH HOH . 
K 6 HOH A 12 312 41 HOH HOH . 
K 6 HOH A 13 313 14 HOH HOH . 
K 6 HOH A 14 314 16 HOH HOH . 
K 6 HOH A 15 315 9 HOH HOH . 
K 6 HOH A 16 316 33 HOH HOH . 
K 6 HOH A 17 317 13 HOH HOH . 
K 6 HOH A 18 318 31 HOH HOH . 
L 6 HOH B 1 301 32 HOH HOH . 
L 6 HOH B 2 302 2 HOH HOH . 
L 6 HOH B 3 303 3 HOH HOH . 
L 6 HOH B 4 304 15 HOH HOH . 
L 6 HOH B 5 305 11 HOH HOH . 
L 6 HOH B 6 306 10 HOH HOH . 
L 6 HOH B 7 307 27 HOH HOH . 
L 6 HOH B 8 308 30 HOH HOH . 
L 6 HOH B 9 309 12 HOH HOH . 
L 6 HOH B 10 310 39 HOH HOH . 
L 6 HOH B 11 311 6 HOH HOH . 
L 6 HOH B 12 312 34 HOH HOH . 
L 6 HOH B 13 313 42 HOH HOH . 
L 6 HOH B 14 314 25 HOH HOH . 
L 6 HOH B 15 315 1 HOH HOH . 
L 6 HOH B 16 316 17 HOH HOH . 
L 6 HOH B 17 317 29 HOH HOH . 
L 6 HOH B 18 318 5 HOH HOH . 
L 6 HOH B 19 319 24 HOH HOH . 
L 6 HOH B 20 320 38 HOH HOH . 
L 6 HOH B 21 321 36 HOH HOH . 
L 6 HOH B 22 322 35 HOH HOH . 
M 6 HOH D 1 1301 18 HOH HOH . 
M 6 HOH D 2 1302 37 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PG GNP . . . H 3 36.985 41.171 59.631 1 35.2 ? PG GNP 201 B 1 
HETATM 2 O O1G GNP . . . H 3 35.814 40.706 60.483 1 36.89 ? O1G GNP 201 B 1 
HETATM 3 O O2G GNP . . . H 3 37.025 42.69 59.59 1 34.83 ? O2G GNP 201 B 1 
HETATM 4 O O3G GNP . . . H 3 38.236 40.58 60.249 1 35 ? O3G GNP 201 B 1 
HETATM 5 N N3B GNP . . . H 3 36.74 40.617 58.146 1 32.19 ? N3B GNP 201 B 1 
HETATM 6 P PB GNP . . . H 3 37.709 40.75 56.868 1 32.25 ? PB GNP 201 B 1 
HETATM 7 O O1B GNP . . . H 3 37.443 42.033 56.179 1 30.86 ? O1B GNP 201 B 1 
HETATM 8 O O2B GNP . . . H 3 39.075 40.546 57.422 1 31.14 ? O2B GNP 201 B 1 
HETATM 9 O O3A GNP . . . H 3 37.286 39.655 55.866 1 29.99 ? O3A GNP 201 B 1 
HETATM 10 P PA GNP . . . H 3 37.978 38.245 55.562 1 33.69 ? PA GNP 201 B 1 
HETATM 11 O O1A GNP . . . H 3 39.284 38.477 54.925 1 31.67 ? O1A GNP 201 B 1 
HETATM 12 O O2A GNP . . . H 3 37.897 37.519 56.842 1 31.29 ? O2A GNP 201 B 1 
HETATM 13 O O5' GNP . . . H 3 37.066 37.565 54.491 1 32.89 ? O5' GNP 201 B 1 
HETATM 14 C C5' GNP . . . H 3 35.657 37.471 54.728 1 32.44 ? C5' GNP 201 B 1 
HETATM 15 C C4' GNP . . . H 3 35.055 36.39 53.844 1 33.99 ? C4' GNP 201 B 1 
HETATM 16 O O4' GNP . . . H 3 35.016 36.783 52.437 1 33.27 ? O4' GNP 201 B 1 
HETATM 17 C C3' GNP . . . H 3 35.757 35.024 53.873 1 38.39 ? C3' GNP 201 B 1 
HETATM 18 O O3' GNP . . . H 3 34.743 34.008 53.666 1 37.34 ? O3' GNP 201 B 1 
HETATM 19 C C2' GNP . . . H 3 36.644 35.129 52.644 1 44.3 ? C2' GNP 201 B 1 
HETATM 20 O O2' GNP . . . H 3 36.879 33.872 52.081 1 42.61 ? O2' GNP 201 B 1 
HETATM 21 C C1' GNP . . . H 3 35.749 35.893 51.655 1 38.15 ? C1' GNP 201 B 1 
HETATM 22 N N9 GNP . . . H 3 36.539 36.609 50.669 1 30.11 ? N9 GNP 201 B 1 
HETATM 23 C C8 GNP . . . H 3 37.586 37.461 50.944 1 35.23 ? C8 GNP 201 B 1 
HETATM 24 N N7 GNP . . . H 3 38.15 37.935 49.864 1 31.4 ? N7 GNP 201 B 1 
HETATM 25 C C5 GNP . . . H 3 37.464 37.378 48.818 1 33.15 ? C5 GNP 201 B 1 
HETATM 26 C C6 GNP . . . H 3 37.649 37.545 47.432 1 31.3 ? C6 GNP 201 B 1 
HETATM 27 O O6 GNP . . . H 3 38.47 38.264 46.842 1 40.72 ? O6 GNP 201 B 1 
HETATM 28 N N1 GNP . . . H 3 36.709 36.784 46.707 1 34.18 ? N1 GNP 201 B 1 
HETATM 29 C C2 GNP . . . H 3 35.777 35.941 47.284 1 33.76 ? C2 GNP 201 B 1 
HETATM 30 N N2 GNP . . . H 3 34.966 35.261 46.436 1 33.76 ? N2 GNP 201 B 1 
HETATM 31 N N3 GNP . . . H 3 35.586 35.806 48.589 1 36.2 ? N3 GNP 201 B 1 
HETATM 32 C C4 GNP . . . H 3 36.465 36.54 49.294 1 28.89 ? C4 GNP 201 B 1 
#
_model_server_stats.io_time_ms              18 
_model_server_stats.parse_time_ms           13 
_model_server_stats.create_model_time_ms    6 
_model_server_stats.query_time_ms           304 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           32 
#