data_6ZSJ # _model_server_result.job_id rlBxb9_pN7uMNDyaJpx6dQ _model_server_result.datetime_utc '2024-11-25 18:43:51' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6zsj # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":201}' # _entry.id 6ZSJ # _exptl.entry_id 6ZSJ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 522.196 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 94.5 _cell.angle_gamma 90 _cell.entry_id 6ZSJ _cell.length_a 117.34 _cell.length_b 35.66 _cell.length_c 168.56 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6ZSJ _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? dimeric 2 author_defined_assembly 1 ? dimeric 2 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,E,F,I,K 1 1 B,D,G,H,J,L 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 E N N ? 3 G N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OG1 THR 24 A THR 22 1_555 F MG MG . A MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.114 ? metalc ? metalc2 A OG1 THR 42 A THR 40 1_555 F MG MG . A MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.251 ? metalc ? metalc3 E O3G GNP . A GNP 201 1_555 F MG MG . A MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.102 ? metalc ? metalc4 E O2B GNP . A GNP 201 1_555 F MG MG . A MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.071 ? metalc ? metalc5 F MG MG . A MG 202 1_555 I O HOH . A HOH 306 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.215 ? metalc ? metalc6 F MG MG . A MG 202 1_555 I O HOH . A HOH 313 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.248 ? metalc ? metalc7 B OG1 THR 24 B THR 22 1_555 H MG MG . B MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.119 ? metalc ? metalc8 B OG1 THR 42 B THR 40 1_555 H MG MG . B MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.127 ? metalc ? metalc9 G O1G GNP . B GNP 201 1_555 H MG MG . B MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.208 ? metalc ? metalc10 G O2B GNP . B GNP 201 1_555 H MG MG . B MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.092 ? metalc ? metalc11 H MG MG . B MG 202 1_555 J O HOH . B HOH 308 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.299 ? metalc ? metalc12 H MG MG . B MG 202 1_555 J O HOH . B HOH 312 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.207 ? # _chem_comp.formula 'C10 H17 N6 O13 P3' _chem_comp.formula_weight 522.196 _chem_comp.id GNP _chem_comp.mon_nstd_flag . _chem_comp.name 'PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G GNP doub 129 n n PG O2G GNP sing 130 n n PG O3G GNP sing 131 n n PG N3B GNP sing 132 n n O2G HOG2 GNP sing 133 n n O3G HOG3 GNP sing 134 n n N3B PB GNP sing 135 n n N3B HNB3 GNP sing 136 n n PB O1B GNP doub 137 n n PB O2B GNP sing 138 n n PB O3A GNP sing 139 n n O2B HOB2 GNP sing 140 n n O3A PA GNP sing 141 n n PA O1A GNP doub 142 n n PA O2A GNP sing 143 n n PA O5' GNP sing 144 n n O2A HOA2 GNP sing 145 n n O5' C5' GNP sing 146 n n C5' C4' GNP sing 147 n n C5' "H5'2" GNP sing 148 n n C5' "H5'1" GNP sing 149 n n C4' O4' GNP sing 150 n n C4' C3' GNP sing 151 n n C4' H4' GNP sing 152 n n O4' C1' GNP sing 153 n n C3' O3' GNP sing 154 n n C3' C2' GNP sing 155 n n C3' H3' GNP sing 156 n n O3' HO3' GNP sing 157 n n C2' O2' GNP sing 158 n n C2' C1' GNP sing 159 n n C2' H2' GNP sing 160 n n O2' HO2' GNP sing 161 n n C1' N9 GNP sing 162 n n C1' H1' GNP sing 163 n n N9 C8 GNP sing 164 n y N9 C4 GNP sing 165 n y C8 N7 GNP doub 166 n y C8 H8 GNP sing 167 n n N7 C5 GNP sing 168 n y C5 C6 GNP sing 169 n y C5 C4 GNP doub 170 n y C6 O6 GNP doub 171 n n C6 N1 GNP sing 172 n y N1 C2 GNP sing 173 n y N1 HN1 GNP sing 174 n n C2 N2 GNP sing 175 n n C2 N3 GNP doub 176 n y N2 HN21 GNP sing 177 n n N2 HN22 GNP sing 178 n n N3 C4 GNP sing 179 n y # _atom_sites.entry_id 6ZSJ _atom_sites.fract_transf_matrix[1][1] 0.008522 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000671 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.028043 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005951 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 GNP A 1 201 303 GNP GNP . F 4 MG A 1 202 305 MG MG . G 3 GNP B 1 201 303 GNP GNP . H 4 MG B 1 202 305 MG MG . I 5 HOH A 1 301 7 HOH HOH . I 5 HOH A 2 302 80 HOH HOH . I 5 HOH A 3 303 113 HOH HOH . I 5 HOH A 4 304 38 HOH HOH . I 5 HOH A 5 305 31 HOH HOH . I 5 HOH A 6 306 4 HOH HOH . I 5 HOH A 7 307 98 HOH HOH . I 5 HOH A 8 308 21 HOH HOH . I 5 HOH A 9 309 136 HOH HOH . I 5 HOH A 10 310 52 HOH HOH . I 5 HOH A 11 311 28 HOH HOH . I 5 HOH A 12 312 85 HOH HOH . I 5 HOH A 13 313 10 HOH HOH . I 5 HOH A 14 314 51 HOH HOH . I 5 HOH A 15 315 91 HOH HOH . I 5 HOH A 16 316 44 HOH HOH . I 5 HOH A 17 317 40 HOH HOH . I 5 HOH A 18 318 76 HOH HOH . I 5 HOH A 19 319 29 HOH HOH . I 5 HOH A 20 320 53 HOH HOH . I 5 HOH A 21 321 22 HOH HOH . I 5 HOH A 22 322 87 HOH HOH . I 5 HOH A 23 323 45 HOH HOH . I 5 HOH A 24 324 15 HOH HOH . I 5 HOH A 25 325 110 HOH HOH . I 5 HOH A 26 326 25 HOH HOH . I 5 HOH A 27 327 81 HOH HOH . I 5 HOH A 28 328 140 HOH HOH . I 5 HOH A 29 329 19 HOH HOH . I 5 HOH A 30 330 59 HOH HOH . I 5 HOH A 31 331 67 HOH HOH . I 5 HOH A 32 332 9 HOH HOH . I 5 HOH A 33 333 77 HOH HOH . I 5 HOH A 34 334 93 HOH HOH . I 5 HOH A 35 335 130 HOH HOH . I 5 HOH A 36 336 68 HOH HOH . I 5 HOH A 37 337 83 HOH HOH . I 5 HOH A 38 338 119 HOH HOH . I 5 HOH A 39 339 102 HOH HOH . I 5 HOH A 40 340 117 HOH HOH . I 5 HOH A 41 341 120 HOH HOH . I 5 HOH A 42 342 79 HOH HOH . I 5 HOH A 43 343 86 HOH HOH . I 5 HOH A 44 344 72 HOH HOH . I 5 HOH A 45 345 133 HOH HOH . I 5 HOH A 46 346 70 HOH HOH . I 5 HOH A 47 347 88 HOH HOH . I 5 HOH A 48 348 135 HOH HOH . I 5 HOH A 49 349 107 HOH HOH . J 5 HOH B 1 301 90 HOH HOH . J 5 HOH B 2 302 13 HOH HOH . J 5 HOH B 3 303 20 HOH HOH . J 5 HOH B 4 304 18 HOH HOH . J 5 HOH B 5 305 78 HOH HOH . J 5 HOH B 6 306 32 HOH HOH . J 5 HOH B 7 307 62 HOH HOH . J 5 HOH B 8 308 1 HOH HOH . J 5 HOH B 9 309 37 HOH HOH . J 5 HOH B 10 310 65 HOH HOH . J 5 HOH B 11 311 116 HOH HOH . J 5 HOH B 12 312 2 HOH HOH . J 5 HOH B 13 313 57 HOH HOH . J 5 HOH B 14 314 95 HOH HOH . J 5 HOH B 15 315 49 HOH HOH . J 5 HOH B 16 316 43 HOH HOH . J 5 HOH B 17 317 17 HOH HOH . J 5 HOH B 18 318 141 HOH HOH . J 5 HOH B 19 319 64 HOH HOH . J 5 HOH B 20 320 42 HOH HOH . J 5 HOH B 21 321 36 HOH HOH . J 5 HOH B 22 322 14 HOH HOH . J 5 HOH B 23 323 8 HOH HOH . J 5 HOH B 24 324 131 HOH HOH . J 5 HOH B 25 325 115 HOH HOH . J 5 HOH B 26 326 30 HOH HOH . J 5 HOH B 27 327 24 HOH HOH . J 5 HOH B 28 328 112 HOH HOH . J 5 HOH B 29 329 106 HOH HOH . J 5 HOH B 30 330 27 HOH HOH . J 5 HOH B 31 331 34 HOH HOH . J 5 HOH B 32 332 5 HOH HOH . J 5 HOH B 33 333 108 HOH HOH . J 5 HOH B 34 334 16 HOH HOH . J 5 HOH B 35 335 23 HOH HOH . J 5 HOH B 36 336 50 HOH HOH . J 5 HOH B 37 337 3 HOH HOH . J 5 HOH B 38 338 26 HOH HOH . J 5 HOH B 39 339 33 HOH HOH . J 5 HOH B 40 340 35 HOH HOH . J 5 HOH B 41 341 125 HOH HOH . J 5 HOH B 42 342 6 HOH HOH . J 5 HOH B 43 343 143 HOH HOH . J 5 HOH B 44 344 12 HOH HOH . J 5 HOH B 45 345 11 HOH HOH . J 5 HOH B 46 346 101 HOH HOH . J 5 HOH B 47 347 61 HOH HOH . J 5 HOH B 48 348 46 HOH HOH . J 5 HOH B 49 349 48 HOH HOH . J 5 HOH B 50 350 122 HOH HOH . J 5 HOH B 51 351 47 HOH HOH . J 5 HOH B 52 352 39 HOH HOH . J 5 HOH B 53 353 56 HOH HOH . J 5 HOH B 54 354 97 HOH HOH . J 5 HOH B 55 355 132 HOH HOH . J 5 HOH B 56 356 84 HOH HOH . J 5 HOH B 57 357 41 HOH HOH . J 5 HOH B 58 358 60 HOH HOH . J 5 HOH B 59 359 55 HOH HOH . J 5 HOH B 60 360 114 HOH HOH . J 5 HOH B 61 361 58 HOH HOH . J 5 HOH B 62 362 66 HOH HOH . J 5 HOH B 63 363 104 HOH HOH . J 5 HOH B 64 364 100 HOH HOH . J 5 HOH B 65 365 89 HOH HOH . J 5 HOH B 66 366 144 HOH HOH . J 5 HOH B 67 367 121 HOH HOH . K 5 HOH C 1 1301 123 HOH HOH . K 5 HOH C 2 1302 92 HOH HOH . K 5 HOH C 3 1303 137 HOH HOH . K 5 HOH C 4 1304 82 HOH HOH . K 5 HOH C 5 1305 99 HOH HOH . K 5 HOH C 6 1306 127 HOH HOH . L 5 HOH D 1 1301 142 HOH HOH . L 5 HOH D 2 1302 111 HOH HOH . L 5 HOH D 3 1303 118 HOH HOH . L 5 HOH D 4 1304 138 HOH HOH . L 5 HOH D 5 1305 54 HOH HOH . L 5 HOH D 6 1306 94 HOH HOH . L 5 HOH D 7 1307 139 HOH HOH . L 5 HOH D 8 1308 63 HOH HOH . L 5 HOH D 9 1309 74 HOH HOH . L 5 HOH D 10 1310 126 HOH HOH . L 5 HOH D 11 1311 75 HOH HOH . L 5 HOH D 12 1312 105 HOH HOH . L 5 HOH D 13 1313 69 HOH HOH . L 5 HOH D 14 1314 71 HOH HOH . L 5 HOH D 15 1315 109 HOH HOH . L 5 HOH D 16 1316 129 HOH HOH . L 5 HOH D 17 1317 96 HOH HOH . L 5 HOH D 18 1318 73 HOH HOH . L 5 HOH D 19 1319 103 HOH HOH . L 5 HOH D 20 1320 128 HOH HOH . L 5 HOH D 21 1321 124 HOH HOH . L 5 HOH D 22 1322 134 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG GNP . . . E 3 72.558 25.82 25.153 1 40.93 ? PG GNP 201 A 1 HETATM 2 O O1G GNP . . . E 3 73.8 25.449 24.404 1 47.13 ? O1G GNP 201 A 1 HETATM 3 O O2G GNP . . . E 3 72.419 27.345 25.179 1 41.15 ? O2G GNP 201 A 1 HETATM 4 O O3G GNP . . . E 3 71.355 25.225 24.414 1 42.36 ? O3G GNP 201 A 1 HETATM 5 N N3B GNP . . . E 3 72.553 25.116 26.688 1 39.89 ? N3B GNP 201 A 1 HETATM 6 P PB GNP . . . E 3 71.451 25.366 27.863 1 37.79 ? PB GNP 201 A 1 HETATM 7 O O1B GNP . . . E 3 71.544 26.712 28.536 1 37.41 ? O1B GNP 201 A 1 HETATM 8 O O2B GNP . . . E 3 70.068 25.104 27.335 1 34.9 ? O2B GNP 201 A 1 HETATM 9 O O3A GNP . . . E 3 71.7 24.296 29.04 1 35.86 ? O3A GNP 201 A 1 HETATM 10 P PA GNP . . . E 3 71.07 22.841 29.086 1 37.16 ? PA GNP 201 A 1 HETATM 11 O O1A GNP . . . E 3 69.637 22.978 29.592 1 41.69 ? O1A GNP 201 A 1 HETATM 12 O O2A GNP . . . E 3 71.39 22.204 27.831 1 36.38 ? O2A GNP 201 A 1 HETATM 13 O O5' GNP . . . E 3 71.832 22.239 30.305 1 45.34 ? O5' GNP 201 A 1 HETATM 14 C C5' GNP . . . E 3 73.278 22.173 30.329 1 36.13 ? C5' GNP 201 A 1 HETATM 15 C C4' GNP . . . E 3 73.778 21.065 31.249 1 37.25 ? C4' GNP 201 A 1 HETATM 16 O O4' GNP . . . E 3 73.594 21.449 32.63 1 35.88 ? O4' GNP 201 A 1 HETATM 17 C C3' GNP . . . E 3 73.124 19.689 31.09 1 37.84 ? C3' GNP 201 A 1 HETATM 18 O O3' GNP . . . E 3 74.061 18.627 31.199 1 54.79 ? O3' GNP 201 A 1 HETATM 19 C C2' GNP . . . E 3 72.148 19.615 32.267 1 46.82 ? C2' GNP 201 A 1 HETATM 20 O O2' GNP . . . E 3 71.858 18.282 32.664 1 59.51 ? O2' GNP 201 A 1 HETATM 21 C C1' GNP . . . E 3 72.862 20.455 33.329 1 41.7 ? C1' GNP 201 A 1 HETATM 22 N N9 GNP . . . E 3 71.909 21.139 34.209 1 39.58 ? N9 GNP 201 A 1 HETATM 23 C C8 GNP . . . E 3 70.896 21.981 33.801 1 38.8 ? C8 GNP 201 A 1 HETATM 24 N N7 GNP . . . E 3 70.188 22.454 34.798 1 40 ? N7 GNP 201 A 1 HETATM 25 C C5 GNP . . . E 3 70.753 21.881 35.918 1 39.38 ? C5 GNP 201 A 1 HETATM 26 C C6 GNP . . . E 3 70.429 22.004 37.328 1 45.35 ? C6 GNP 201 A 1 HETATM 27 O O6 GNP . . . E 3 69.557 22.667 37.812 1 42.84 ? O6 GNP 201 A 1 HETATM 28 N N1 GNP . . . E 3 71.275 21.252 38.126 1 39.55 ? N1 GNP 201 A 1 HETATM 29 C C2 GNP . . . E 3 72.287 20.462 37.67 1 40.37 ? C2 GNP 201 A 1 HETATM 30 N N2 GNP . . . E 3 72.983 19.78 38.582 1 39.89 ? N2 GNP 201 A 1 HETATM 31 N N3 GNP . . . E 3 72.605 20.336 36.379 1 42.28 ? N3 GNP 201 A 1 HETATM 32 C C4 GNP . . . E 3 71.81 21.061 35.578 1 38.37 ? C4 GNP 201 A 1 # _model_server_stats.io_time_ms 56 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 13 _model_server_stats.query_time_ms 295 _model_server_stats.encode_time_ms 9 _model_server_stats.element_count 32 #