data_6ZUC
#
_model_server_result.job_id            ncKQFNF_Q58linZhLy0CxA 
_model_server_result.datetime_utc      '2024-12-24 02:22:58' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6zuc 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"N","auth_seq_id":611}' 
#
_entry.id    6ZUC 
#
_exptl.entry_id    6ZUC 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          6 
_entity.src_method                  nat 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    3 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            6ZUC 
_cell.length_a            42.959 
_cell.length_b            62.733 
_cell.length_c            186.926 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6ZUC 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    'P 2ac 2ab' 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 6 N N N 
? 6 O N N 
? 6 P N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 B OD1 ASP 65 B ASP 243 1_555 E MN MN . B MN 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.407 ? 
metalc ? metalc2 B OD2 ASP 65 B ASP 243 1_555 F MN MN . B MN 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.384 ? 
metalc ? metalc3 B O GLY 66 B GLY 244 1_555 E MN MN . B MN 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.131 ? 
metalc ? metalc4 B OD1 ASP 120 B ASP 298 1_555 D MN MN . B MN 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.552 ? 
metalc ? metalc5 B OD2 ASP 120 B ASP 298 1_555 D MN MN . B MN 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.625 ? 
metalc ? metalc6 B OE2 GLU 124 B GLU 302 1_555 D MN MN . B MN 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.231 ? 
metalc ? metalc7 B O GLY 223 B GLY 401 1_555 D MN MN . B MN 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.617 ? 
metalc ? metalc8 B OD1 ASP 254 B ASP 432 1_555 F MN MN . B MN 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.345 ? 
metalc ? metalc9 B OD2 ASP 254 B ASP 432 1_555 G MN MN . B MN 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.749 ? 
metalc ? metalc10 B OD2 ASP 314 B ASP 492 1_555 F MN MN . B MN 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.402 ? 
metalc ? metalc11 D MN MN . B MN 601 1_555 R O HOH . B HOH 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.651 ? 
metalc ? metalc12 D MN MN . B MN 601 1_555 R O HOH . B HOH 765 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.548 ? 
metalc ? metalc13 E MN MN . B MN 602 1_555 R O HOH . B HOH 713 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.93 ? 
metalc ? metalc14 E MN MN . B MN 602 1_555 R O HOH . B HOH 736 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.059 ? 
metalc ? metalc15 E MN MN . B MN 602 1_555 R O HOH . B HOH 771 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.672 ? 
metalc ? metalc16 F MN MN . B MN 603 1_555 R O HOH . B HOH 707 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.465 ? 
metalc ? metalc17 F MN MN . B MN 603 1_555 R O HOH . B HOH 747 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.664 ? 
metalc ? metalc18 G MN MN . B MN 604 1_555 R O HOH . B HOH 716 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.967 ? 
metalc ? metalc19 G MN MN . B MN 604 1_555 R O HOH . B HOH 758 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.278 ? 
metalc ? metalc20 G MN MN . B MN 604 1_555 R O HOH . B HOH 775 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.694 ? 
metalc ? metalc21 G MN MN . B MN 604 1_555 R O HOH . B HOH 777 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.626 ? 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 129 n n 
C1 C2 GOL sing 130 n n 
C1 H11 GOL sing 131 n n 
C1 H12 GOL sing 132 n n 
O1 HO1 GOL sing 133 n n 
C2 O2 GOL sing 134 n n 
C2 C3 GOL sing 135 n n 
C2 H2 GOL sing 136 n n 
O2 HO2 GOL sing 137 n n 
C3 O3 GOL sing 138 n n 
C3 H31 GOL sing 139 n n 
C3 H32 GOL sing 140 n n 
O3 HO3 GOL sing 141 n n 
#
_atom_sites.entry_id                     6ZUC 
_atom_sites.fract_transf_matrix[1][1]    0.023278 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.015941 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.00535 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 3 QPZ A 1 301 301 QPZ 1SB . 
D 4 MN B 1 601 1 MN MN . 
E 4 MN B 1 602 2 MN MN . 
F 4 MN B 1 603 3 MN MN . 
G 4 MN B 1 604 4 MN MN . 
H 5 CL B 1 605 5 CL CL . 
I 5 CL B 1 606 6 CL CL . 
J 5 CL B 1 607 7 CL CL . 
K 5 CL B 1 608 8 CL CL . 
L 5 CL B 1 609 9 CL CL . 
M 5 CL B 1 610 10 CL CL . 
N 6 GOL B 1 611 21 GOL GOL . 
O 6 GOL B 1 612 22 GOL GOL . 
P 6 GOL B 1 613 23 GOL GOL . 
Q 7 HOH A 1 401 56 HOH HOH . 
Q 7 HOH A 2 402 3 HOH HOH . 
Q 7 HOH A 3 403 1 HOH HOH . 
Q 7 HOH A 4 404 60 HOH HOH . 
Q 7 HOH A 5 405 42 HOH HOH . 
Q 7 HOH A 6 406 48 HOH HOH . 
Q 7 HOH A 7 407 27 HOH HOH . 
Q 7 HOH A 8 408 26 HOH HOH . 
Q 7 HOH A 9 409 2 HOH HOH . 
Q 7 HOH A 10 410 55 HOH HOH . 
Q 7 HOH A 11 411 104 HOH HOH . 
Q 7 HOH A 12 412 68 HOH HOH . 
Q 7 HOH A 13 413 94 HOH HOH . 
Q 7 HOH A 14 414 62 HOH HOH . 
Q 7 HOH A 15 415 77 HOH HOH . 
Q 7 HOH A 16 416 23 HOH HOH . 
Q 7 HOH A 17 417 4 HOH HOH . 
Q 7 HOH A 18 418 112 HOH HOH . 
Q 7 HOH A 19 419 76 HOH HOH . 
Q 7 HOH A 20 420 95 HOH HOH . 
Q 7 HOH A 21 421 89 HOH HOH . 
Q 7 HOH A 22 422 46 HOH HOH . 
Q 7 HOH A 23 423 103 HOH HOH . 
Q 7 HOH A 24 424 71 HOH HOH . 
Q 7 HOH A 25 425 72 HOH HOH . 
Q 7 HOH A 26 426 79 HOH HOH . 
Q 7 HOH A 27 427 82 HOH HOH . 
Q 7 HOH A 28 428 78 HOH HOH . 
Q 7 HOH A 29 429 81 HOH HOH . 
Q 7 HOH A 30 430 75 HOH HOH . 
Q 7 HOH A 31 431 97 HOH HOH . 
Q 7 HOH A 32 432 106 HOH HOH . 
Q 7 HOH A 33 433 51 HOH HOH . 
Q 7 HOH A 34 434 50 HOH HOH . 
Q 7 HOH A 35 435 84 HOH HOH . 
R 7 HOH B 1 701 49 HOH HOH . 
R 7 HOH B 2 702 44 HOH HOH . 
R 7 HOH B 3 703 34 HOH HOH . 
R 7 HOH B 4 704 30 HOH HOH . 
R 7 HOH B 5 705 93 HOH HOH . 
R 7 HOH B 6 706 9 HOH HOH . 
R 7 HOH B 7 707 12 HOH HOH . 
R 7 HOH B 8 708 21 HOH HOH . 
R 7 HOH B 9 709 90 HOH HOH . 
R 7 HOH B 10 710 24 HOH HOH . 
R 7 HOH B 11 711 73 HOH HOH . 
R 7 HOH B 12 712 14 HOH HOH . 
R 7 HOH B 13 713 13 HOH HOH . 
R 7 HOH B 14 714 33 HOH HOH . 
R 7 HOH B 15 715 31 HOH HOH . 
R 7 HOH B 16 716 116 HOH HOH . 
R 7 HOH B 17 717 28 HOH HOH . 
R 7 HOH B 18 718 8 HOH HOH . 
R 7 HOH B 19 719 85 HOH HOH . 
R 7 HOH B 20 720 5 HOH HOH . 
R 7 HOH B 21 721 117 HOH HOH . 
R 7 HOH B 22 722 16 HOH HOH . 
R 7 HOH B 23 723 6 HOH HOH . 
R 7 HOH B 24 724 11 HOH HOH . 
R 7 HOH B 25 725 15 HOH HOH . 
R 7 HOH B 26 726 64 HOH HOH . 
R 7 HOH B 27 727 7 HOH HOH . 
R 7 HOH B 28 728 18 HOH HOH . 
R 7 HOH B 29 729 38 HOH HOH . 
R 7 HOH B 30 730 52 HOH HOH . 
R 7 HOH B 31 731 35 HOH HOH . 
R 7 HOH B 32 732 107 HOH HOH . 
R 7 HOH B 33 733 41 HOH HOH . 
R 7 HOH B 34 734 10 HOH HOH . 
R 7 HOH B 35 735 99 HOH HOH . 
R 7 HOH B 36 736 87 HOH HOH . 
R 7 HOH B 37 737 91 HOH HOH . 
R 7 HOH B 38 738 98 HOH HOH . 
R 7 HOH B 39 739 32 HOH HOH . 
R 7 HOH B 40 740 19 HOH HOH . 
R 7 HOH B 41 741 70 HOH HOH . 
R 7 HOH B 42 742 110 HOH HOH . 
R 7 HOH B 43 743 25 HOH HOH . 
R 7 HOH B 44 744 63 HOH HOH . 
R 7 HOH B 45 745 108 HOH HOH . 
R 7 HOH B 46 746 17 HOH HOH . 
R 7 HOH B 47 747 57 HOH HOH . 
R 7 HOH B 48 748 58 HOH HOH . 
R 7 HOH B 49 749 47 HOH HOH . 
R 7 HOH B 50 750 53 HOH HOH . 
R 7 HOH B 51 751 101 HOH HOH . 
R 7 HOH B 52 752 29 HOH HOH . 
R 7 HOH B 53 753 61 HOH HOH . 
R 7 HOH B 54 754 20 HOH HOH . 
R 7 HOH B 55 755 37 HOH HOH . 
R 7 HOH B 56 756 92 HOH HOH . 
R 7 HOH B 57 757 59 HOH HOH . 
R 7 HOH B 58 758 115 HOH HOH . 
R 7 HOH B 59 759 88 HOH HOH . 
R 7 HOH B 60 760 45 HOH HOH . 
R 7 HOH B 61 761 74 HOH HOH . 
R 7 HOH B 62 762 22 HOH HOH . 
R 7 HOH B 63 763 69 HOH HOH . 
R 7 HOH B 64 764 80 HOH HOH . 
R 7 HOH B 65 765 43 HOH HOH . 
R 7 HOH B 66 766 100 HOH HOH . 
R 7 HOH B 67 767 40 HOH HOH . 
R 7 HOH B 68 768 96 HOH HOH . 
R 7 HOH B 69 769 39 HOH HOH . 
R 7 HOH B 70 770 36 HOH HOH . 
R 7 HOH B 71 771 86 HOH HOH . 
R 7 HOH B 72 772 111 HOH HOH . 
R 7 HOH B 73 773 105 HOH HOH . 
R 7 HOH B 74 774 66 HOH HOH . 
R 7 HOH B 75 775 113 HOH HOH . 
R 7 HOH B 76 776 54 HOH HOH . 
R 7 HOH B 77 777 114 HOH HOH . 
R 7 HOH B 78 778 109 HOH HOH . 
R 7 HOH B 79 779 67 HOH HOH . 
R 7 HOH B 80 780 65 HOH HOH . 
R 7 HOH B 81 781 102 HOH HOH . 
R 7 HOH B 82 782 83 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . N 6 5.309 21.578 39.069 1 81.79 ? C1 GOL 611 B 1 
HETATM 2 O O1 GOL . . . N 6 4.54 21.936 40.148 1 73.59 ? O1 GOL 611 B 1 
HETATM 3 C C2 GOL . . . N 6 4.596 22.031 37.752 1 83.64 ? C2 GOL 611 B 1 
HETATM 4 O O2 GOL . . . N 6 3.929 23.182 37.877 1 87.5 ? O2 GOL 611 B 1 
HETATM 5 C C3 GOL . . . N 6 5.797 21.991 36.778 1 73.16 ? C3 GOL 611 B 1 
HETATM 6 O O3 GOL . . . N 6 5.36 21.293 35.672 1 62.09 ? O3 GOL 611 B 1 
HETATM 7 H H11 GOL . . . N 6 5.458 20.62 39.027 1 98.15 ? H11 GOL 611 B 1 
HETATM 8 H H12 GOL . . . N 6 6.191 21.982 39.098 1 98.15 ? H12 GOL 611 B 1 
HETATM 9 H HO1 GOL . . . N 6 4.598 22.773 40.225 1 88.3 ? HO1 GOL 611 B 1 
HETATM 10 H H2 GOL . . . N 6 3.874 21.457 37.45 1 100.37 ? H2 GOL 611 B 1 
HETATM 11 H HO2 GOL . . . N 6 3.092 22.931 37.874 1 105 ? HO2 GOL 611 B 1 
HETATM 12 H H31 GOL . . . N 6 6.555 21.58 37.222 1 87.79 ? H31 GOL 611 B 1 
HETATM 13 H H32 GOL . . . N 6 6.078 22.898 36.579 1 87.79 ? H32 GOL 611 B 1 
HETATM 14 H HO3 GOL . . . N 6 4.987 21.864 35.196 1 74.51 ? HO3 GOL 611 B 1 
#
_model_server_stats.io_time_ms              19 
_model_server_stats.parse_time_ms           27 
_model_server_stats.create_model_time_ms    5 
_model_server_stats.query_time_ms           314 
_model_server_stats.encode_time_ms          9 
_model_server_stats.element_count           14 
#