data_6ZUF # _model_server_result.job_id EnvYZV7KHd1mQgGINJMJHg _model_server_result.datetime_utc '2024-11-22 11:31:51' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6zuf # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"O","auth_seq_id":101}' # _entry.id 6ZUF # _exptl.entry_id 6ZUF _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 9 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 112.38 _cell.angle_beta 104.87 _cell.angle_gamma 101.19 _cell.entry_id 6ZUF _cell.length_a 36.73 _cell.length_b 51.28 _cell.length_c 56.08 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6ZUF _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,E,F,G,H,O,R,T 1 1 B,D,I,J,K,L,M,N,P,Q,S,U 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 E N N ? 3 F N N ? 3 I N N ? 3 J N N ? 3 K N N ? 3 L N N ? 3 M N N ? 3 O N N ? 3 P N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 C C LYS 2 C LYS 2 1_555 C N QQB 3 C QQB 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? covale ? covale2 C C QQB 3 C QQB 3 1_555 C N OUR 4 C OUR 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale3 C C OUR 4 C OUR 4 1_555 C N URL 5 C URL 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? covale ? covale4 C C URL 5 C URL 5 1_555 C N QQ8 6 C QQ8 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.339 ? covale ? covale5 C C QQ8 6 C QQ8 6 1_555 C N ARG 7 C ARG 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.347 ? covale ? covale6 D C LYS 2 D LYS 2 1_555 D N QQB 3 D QQB 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.34 ? covale ? covale7 D C QQB 3 D QQB 3 1_555 D N OUR 4 D OUR 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale8 D C OUR 4 D OUR 4 1_555 D N URL 5 D URL 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? covale ? covale9 D C URL 5 D URL 5 1_555 D N QQ8 6 D QQ8 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.34 ? covale ? covale10 D C QQ8 6 D QQ8 6 1_555 D N ARG 7 D ARG 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.343 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 129 n n C1 C2 GOL sing 130 n n C1 H11 GOL sing 131 n n C1 H12 GOL sing 132 n n O1 HO1 GOL sing 133 n n C2 O2 GOL sing 134 n n C2 C3 GOL sing 135 n n C2 H2 GOL sing 136 n n O2 HO2 GOL sing 137 n n C3 O3 GOL sing 138 n n C3 H31 GOL sing 139 n n C3 H32 GOL sing 140 n n O3 HO3 GOL sing 141 n n # _atom_sites.entry_id 6ZUF _atom_sites.fract_transf_matrix[1][1] 0.027226 _atom_sites.fract_transf_matrix[1][2] 0.005386 _atom_sites.fract_transf_matrix[1][3] 0.010859 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.019879 _atom_sites.fract_transf_matrix[2][3] 0.010132 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.020708 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 GOL A 1 201 2 GOL GOL . F 3 GOL A 1 202 7 GOL GOL . G 4 SO4 A 1 203 1 SO4 SO4 . H 4 SO4 A 1 204 2 SO4 SO4 . I 3 GOL B 1 201 1 GOL GOL . J 3 GOL B 1 202 5 GOL GOL . K 3 GOL B 1 203 6 GOL GOL . L 3 GOL B 1 204 8 GOL GOL . M 3 GOL B 1 205 10 GOL GOL . N 4 SO4 B 1 206 3 SO4 SO4 . O 3 GOL C 1 101 3 GOL GOL . P 3 GOL D 1 101 4 GOL GOL . Q 4 SO4 D 1 102 4 SO4 SO4 . R 5 HOH A 1 301 94 HOH HOH . R 5 HOH A 2 302 46 HOH HOH . R 5 HOH A 3 303 110 HOH HOH . R 5 HOH A 4 304 33 HOH HOH . R 5 HOH A 5 305 176 HOH HOH . R 5 HOH A 6 306 91 HOH HOH . R 5 HOH A 7 307 138 HOH HOH . R 5 HOH A 8 308 5 HOH HOH . R 5 HOH A 9 309 80 HOH HOH . R 5 HOH A 10 310 131 HOH HOH . R 5 HOH A 11 311 87 HOH HOH . R 5 HOH A 12 312 24 HOH HOH . R 5 HOH A 13 313 30 HOH HOH . R 5 HOH A 14 314 70 HOH HOH . R 5 HOH A 15 315 59 HOH HOH . R 5 HOH A 16 316 140 HOH HOH . R 5 HOH A 17 317 174 HOH HOH . R 5 HOH A 18 318 77 HOH HOH . R 5 HOH A 19 319 32 HOH HOH . R 5 HOH A 20 320 11 HOH HOH . R 5 HOH A 21 321 189 HOH HOH . R 5 HOH A 22 322 45 HOH HOH . R 5 HOH A 23 323 204 HOH HOH . R 5 HOH A 24 324 36 HOH HOH . R 5 HOH A 25 325 22 HOH HOH . R 5 HOH A 26 326 2 HOH HOH . R 5 HOH A 27 327 173 HOH HOH . R 5 HOH A 28 328 181 HOH HOH . R 5 HOH A 29 329 129 HOH HOH . R 5 HOH A 30 330 23 HOH HOH . R 5 HOH A 31 331 6 HOH HOH . R 5 HOH A 32 332 175 HOH HOH . R 5 HOH A 33 333 172 HOH HOH . R 5 HOH A 34 334 57 HOH HOH . R 5 HOH A 35 335 62 HOH HOH . R 5 HOH A 36 336 42 HOH HOH . R 5 HOH A 37 337 7 HOH HOH . R 5 HOH A 38 338 137 HOH HOH . R 5 HOH A 39 339 44 HOH HOH . R 5 HOH A 40 340 43 HOH HOH . R 5 HOH A 41 341 199 HOH HOH . R 5 HOH A 42 342 21 HOH HOH . R 5 HOH A 43 343 39 HOH HOH . R 5 HOH A 44 344 92 HOH HOH . R 5 HOH A 45 345 98 HOH HOH . R 5 HOH A 46 346 198 HOH HOH . R 5 HOH A 47 347 28 HOH HOH . R 5 HOH A 48 348 13 HOH HOH . R 5 HOH A 49 349 56 HOH HOH . R 5 HOH A 50 350 78 HOH HOH . R 5 HOH A 51 351 61 HOH HOH . R 5 HOH A 52 352 90 HOH HOH . R 5 HOH A 53 353 123 HOH HOH . R 5 HOH A 54 354 151 HOH HOH . R 5 HOH A 55 355 14 HOH HOH . R 5 HOH A 56 356 69 HOH HOH . R 5 HOH A 57 357 160 HOH HOH . R 5 HOH A 58 358 184 HOH HOH . R 5 HOH A 59 359 48 HOH HOH . R 5 HOH A 60 360 164 HOH HOH . R 5 HOH A 61 361 141 HOH HOH . R 5 HOH A 62 362 109 HOH HOH . R 5 HOH A 63 363 40 HOH HOH . R 5 HOH A 64 364 115 HOH HOH . R 5 HOH A 65 365 60 HOH HOH . R 5 HOH A 66 366 202 HOH HOH . R 5 HOH A 67 367 105 HOH HOH . R 5 HOH A 68 368 120 HOH HOH . R 5 HOH A 69 369 68 HOH HOH . R 5 HOH A 70 370 126 HOH HOH . R 5 HOH A 71 371 136 HOH HOH . R 5 HOH A 72 372 159 HOH HOH . R 5 HOH A 73 373 88 HOH HOH . R 5 HOH A 74 374 103 HOH HOH . R 5 HOH A 75 375 135 HOH HOH . R 5 HOH A 76 376 205 HOH HOH . R 5 HOH A 77 377 116 HOH HOH . R 5 HOH A 78 378 187 HOH HOH . R 5 HOH A 79 379 157 HOH HOH . R 5 HOH A 80 380 162 HOH HOH . S 5 HOH B 1 301 180 HOH HOH . S 5 HOH B 2 302 183 HOH HOH . S 5 HOH B 3 303 144 HOH HOH . S 5 HOH B 4 304 177 HOH HOH . S 5 HOH B 5 305 29 HOH HOH . S 5 HOH B 6 306 132 HOH HOH . S 5 HOH B 7 307 127 HOH HOH . S 5 HOH B 8 308 86 HOH HOH . S 5 HOH B 9 309 4 HOH HOH . S 5 HOH B 10 310 9 HOH HOH . S 5 HOH B 11 311 119 HOH HOH . S 5 HOH B 12 312 113 HOH HOH . S 5 HOH B 13 313 114 HOH HOH . S 5 HOH B 14 314 186 HOH HOH . S 5 HOH B 15 315 147 HOH HOH . S 5 HOH B 16 316 145 HOH HOH . S 5 HOH B 17 317 47 HOH HOH . S 5 HOH B 18 318 38 HOH HOH . S 5 HOH B 19 319 153 HOH HOH . S 5 HOH B 20 320 3 HOH HOH . S 5 HOH B 21 321 194 HOH HOH . S 5 HOH B 22 322 197 HOH HOH . S 5 HOH B 23 323 101 HOH HOH . S 5 HOH B 24 324 166 HOH HOH . S 5 HOH B 25 325 112 HOH HOH . S 5 HOH B 26 326 12 HOH HOH . S 5 HOH B 27 327 17 HOH HOH . S 5 HOH B 28 328 20 HOH HOH . S 5 HOH B 29 329 25 HOH HOH . S 5 HOH B 30 330 168 HOH HOH . S 5 HOH B 31 331 65 HOH HOH . S 5 HOH B 32 332 178 HOH HOH . S 5 HOH B 33 333 31 HOH HOH . S 5 HOH B 34 334 34 HOH HOH . S 5 HOH B 35 335 121 HOH HOH . S 5 HOH B 36 336 203 HOH HOH . S 5 HOH B 37 337 67 HOH HOH . S 5 HOH B 38 338 72 HOH HOH . S 5 HOH B 39 339 169 HOH HOH . S 5 HOH B 40 340 10 HOH HOH . S 5 HOH B 41 341 146 HOH HOH . S 5 HOH B 42 342 1 HOH HOH . S 5 HOH B 43 343 35 HOH HOH . S 5 HOH B 44 344 16 HOH HOH . S 5 HOH B 45 345 188 HOH HOH . S 5 HOH B 46 346 18 HOH HOH . S 5 HOH B 47 347 143 HOH HOH . S 5 HOH B 48 348 15 HOH HOH . S 5 HOH B 49 349 102 HOH HOH . S 5 HOH B 50 350 158 HOH HOH . S 5 HOH B 51 351 73 HOH HOH . S 5 HOH B 52 352 8 HOH HOH . S 5 HOH B 53 353 167 HOH HOH . S 5 HOH B 54 354 19 HOH HOH . S 5 HOH B 55 355 41 HOH HOH . S 5 HOH B 56 356 52 HOH HOH . S 5 HOH B 57 357 191 HOH HOH . S 5 HOH B 58 358 95 HOH HOH . S 5 HOH B 59 359 83 HOH HOH . S 5 HOH B 60 360 134 HOH HOH . S 5 HOH B 61 361 139 HOH HOH . S 5 HOH B 62 362 71 HOH HOH . S 5 HOH B 63 363 156 HOH HOH . S 5 HOH B 64 364 128 HOH HOH . S 5 HOH B 65 365 85 HOH HOH . S 5 HOH B 66 366 58 HOH HOH . S 5 HOH B 67 367 37 HOH HOH . S 5 HOH B 68 368 26 HOH HOH . S 5 HOH B 69 369 75 HOH HOH . S 5 HOH B 70 370 124 HOH HOH . S 5 HOH B 71 371 82 HOH HOH . S 5 HOH B 72 372 108 HOH HOH . S 5 HOH B 73 373 51 HOH HOH . S 5 HOH B 74 374 100 HOH HOH . S 5 HOH B 75 375 117 HOH HOH . S 5 HOH B 76 376 104 HOH HOH . S 5 HOH B 77 377 148 HOH HOH . S 5 HOH B 78 378 161 HOH HOH . S 5 HOH B 79 379 96 HOH HOH . S 5 HOH B 80 380 106 HOH HOH . S 5 HOH B 81 381 74 HOH HOH . S 5 HOH B 82 382 195 HOH HOH . S 5 HOH B 83 383 93 HOH HOH . S 5 HOH B 84 384 97 HOH HOH . S 5 HOH B 85 385 201 HOH HOH . S 5 HOH B 86 386 152 HOH HOH . S 5 HOH B 87 387 130 HOH HOH . S 5 HOH B 88 388 207 HOH HOH . S 5 HOH B 89 389 66 HOH HOH . S 5 HOH B 90 390 142 HOH HOH . S 5 HOH B 91 391 122 HOH HOH . S 5 HOH B 92 392 200 HOH HOH . S 5 HOH B 93 393 206 HOH HOH . S 5 HOH B 94 394 190 HOH HOH . S 5 HOH B 95 395 208 HOH HOH . T 5 HOH C 1 201 171 HOH HOH . T 5 HOH C 2 202 99 HOH HOH . U 5 HOH D 1 201 196 HOH HOH . U 5 HOH D 2 202 165 HOH HOH . U 5 HOH D 3 203 170 HOH HOH . U 5 HOH D 4 204 193 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . O 3 0.622 -21.547 -14.842 1 51.57 ? C1 GOL 101 C 1 HETATM 2 O O1 GOL . . . O 3 0.594 -22.926 -15.145 1 51.14 ? O1 GOL 101 C 1 HETATM 3 C C2 GOL . . . O 3 0.426 -20.713 -16.086 1 52.29 ? C2 GOL 101 C 1 HETATM 4 O O2 GOL . . . O 3 -0.927 -20.813 -16.532 1 52.59 ? O2 GOL 101 C 1 HETATM 5 C C3 GOL . . . O 3 0.728 -19.279 -15.735 1 52.11 ? C3 GOL 101 C 1 HETATM 6 O O3 GOL . . . O 3 -0.037 -18.393 -16.54 1 52.25 ? O3 GOL 101 C 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 306 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 6 #